Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004565

Physical Location & Seq

Genomic Coordinates Forward (+)

14400735 .. 14406145

Gene Structure 5411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG091100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCCCAACAGAGCAACGGCGGCAGCGGCGATCTGAGCACGACTCAACAGGCCCAGCCCAACCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGTGGATGCATCAGCACCAGCAGCAATGGATGGCGATGCAGTACCCGGCGGCGGCCATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTACTTACGCCGCTCATCCGCATCACAATCCCTACCAGCAGGCTCAGGCAGCCGCCGCCGTGGCCTATCAGCAGCAGCCGCCGCTCAAGCAGCAGCAGCAGCAGCAGTCTCAGTCGCAGCAGAAGATGGGGCCTACTGATGAGGTCAGGACCATCTGGGCTGGCGACCTGCACCATTGGATGGACGAGGCTTACCTTCATGGCTGCTTCGCCTACACCGGCCAGGTTTCTTCAGTAAAGGTTATACGCAATAAGCAAACAGGTCAGACAGAAGGGTATGGTTTTGTTGAGTTCTATTCACGTGAAGCAGCTGAGGAAGTTCTGCAGACCTATAATGGTACTCCTATGCCAAATACAGAGCAGCCTTTTCGTCTGAACTGGGCAACCTTTAGTGCGGGTGACAGACGAGCAGATACTAGTTCTGATCTATCTATCTTTGTAGGAGATTTAGCTACAGATGTGACTGACACTATGTTGCAAGAAACCTTTGCTAGTAGATATACATCTGTTAAGGGGGCAAAAGTTGTTCAAGATGCAAATACCGGTCGTTCAAAGGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGGACAAAGGCCATTGTGGAAATGAATGGTGCGTATTGTTCGAGCAGGCCCATGCGTATAGGTGTTGCAACGCCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGCATTGGTATTGGCTGGAGGTGGTGGACATGCAAATGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAATGAGGAAGACCTGAGGCAGCCGTTTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTCGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACGCAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGGTTAATGGGTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

452

Amino Acids

49.69

Weight (kDa)

6.31

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	122 - 186	3.2e-11	RNA recognition motif
RRM_1	PF00076	212 - 282	4.9e-16	RNA recognition motif
RRM_1	PF00076	332 - 395	1.3e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49600 AT1G49600 AT1G49600 AT3G19130
fragaria_vesca	FvH4_2g06660 FvH4_2g06660 FvH4_2g06660
malus_domestica	MD05G1076000.v1.1 MD10G1090700.v1.1
prunus_persica	Prupe.8G119500_v2.0.a1 Prupe.8G119500_v2.0.a1
pyrus_communis	pycom05g06950 pycom10g07420
rosa_chinensis	RchiOBHm_Chr4g0407821 RchiOBHm_Chr6g0258701
rosa_laevigata	RLG00000014588
rosa_multiflora	Rmu_ssc0000014.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352380 Rroxscaffold_7G00206030
rosa_rugosa	Rorug04G0081300 Rorug05G0582900 Rorug05G0583000 Rorug05G0583100
rosa_samantha	Rh4AG146600 Rh4BG144100 Rh4CG153100 Rh4DG140600 Rh6BG091100 Rh6DG082700
rosa_wichuraiana	Rw0G022700 Rw6G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	944
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccBSI	CCGCTC	2 cut(s)	215, 286
AcoI	YGGCCR	2 cut(s)	150, 421
AcuI	CTGAAG	1 cut(s)	417
AcvI	CACGTG	1 cut(s)	503
AfaI	GTAC	5 cut(s)	140, 185, 541, 896, 1289
AfiI	CCNNNNNNNGG	2 cut(s)	148, 382
AgeI	ACCGGT	2 cut(s)	743, 1084
AgsI	TTSAA	2 cut(s)	731, 753
AhlI	ACTAGT	1 cut(s)	617
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	3 cut(s)	512, 653, 1337
AluI	AGCT	3 cut(s)	512, 653, 1337
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	2 cut(s)	315, 1075
AoxI	GGCC	8 cut(s)	3, 51, 150, 264, 332, 421, 801, 839
ArsI	GACNNNNNNTTYG	2 cut(s)	1171, 1203
AsiGI	ACCGGT	2 cut(s)	743, 1084
AspLEI	GCGC	1 cut(s)	1303
AspS9I	GGNCC	5 cut(s)	4, 52, 332, 351, 840
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	611, 1073
AvaII	GGWCC	1 cut(s)	351
AxyI	CCTNAGG	1 cut(s)	1037
BanI	GGYRCC	1 cut(s)	944
BanII	GRGCYC	1 cut(s)	981
BbrPI	CACGTG	1 cut(s)	503
BbsI	GAAGAC	2 cut(s)	1038, 1344
Bbv12I	GWGCWC	1 cut(s)	41
BbvCI	CCTCAGC	1 cut(s)	513
BccI	CCATC	6 cut(s)	121, 172, 322, 362, 376, 965
BceAI	ACGGC	3 cut(s)	34, 245, 1030
BcgI	CGANNNNNNTGC	4 cut(s)	551, 585, 1166, 1200
BciT130I	CCWGG	1 cut(s)	425
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	315, 1075
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	2 cut(s)	618, 693
BfmI	CTRYAG	3 cut(s)	524, 654, 1332
BfuAI	ACCTGC	1 cut(s)	378
BglI	GCCNNNNNGGC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	1315
BmcAI	AGTACT	1 cut(s)	896
Bme1390I	CCNGG	2 cut(s)	143, 425
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	5 cut(s)	4, 52, 332, 351, 840
BmiI	GGNNCC	2 cut(s)	333, 946
BmrFI	CCNGG	2 cut(s)	143, 425
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	7 cut(s)	93, 115, 123, 153, 232, 724, 1120
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	2 cut(s)	1038, 1344
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpmI	CTGGAG	1 cut(s)	942
Bpu10I	CCTNAGC	2 cut(s)	246, 513
BpuEI	CTTGAG	2 cut(s)	272, 1219
BpuMI	CCSGG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	703
BsaJI	CCNNGG	3 cut(s)	153, 261, 955
BsaWI	WCCGGW	2 cut(s)	743, 1084
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 382
Bse118I	RCCGGY	3 cut(s)	419, 743, 1084
Bse1I	ACTGG	2 cut(s)	584, 1243
Bse21I	CCTNAGG	1 cut(s)	1037
Bse3DI	GCAATG	3 cut(s)	128, 948, 1149
Bse8I	GATNNNNATC	1 cut(s)	703
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	3 cut(s)	153, 261, 955
BseGI	GGATG	6 cut(s)	108, 132, 217, 387, 787, 1135
BseJI	GATNNNNATC	1 cut(s)	703
BseLI	CCNNNNNNNGG	2 cut(s)	148, 382
BseMI	GCAATG	3 cut(s)	128, 948, 1149
BseMII	CTCAG	8 cut(s)	26, 260, 326, 504, 977, 1028, 1125, 1310
BseNI	ACTGG	2 cut(s)	584, 1243
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	8 cut(s)	5, 53, 152, 266, 334, 423, 803, 841
BshNI	GGYRCC	1 cut(s)	944
BshTI	ACCGGT	2 cut(s)	743, 1084
BsiEI	CGRYCG	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	4 cut(s)	143, 420, 744, 1085
BslI	CCNNNNNNNGG	2 cut(s)	148, 382
BsmAI	GTCTC	2 cut(s)	315, 1075
BsmI	GAATGC	2 cut(s)	1144, 1162
BsnI	GGCC	8 cut(s)	5, 53, 152, 266, 334, 423, 803, 841
Bsp1286I	GDGCHC	2 cut(s)	41, 981
Bsp143I	GATC	4 cut(s)	31, 625, 1226, 1315
Bsp19I	CCATGG	1 cut(s)	153
BspANI	GGCC	8 cut(s)	5, 53, 152, 266, 334, 423, 803, 841
BspCNI	CTCAG	8 cut(s)	27, 259, 325, 505, 976, 1029, 1126, 1311
BspLI	GGNNCC	2 cut(s)	333, 946
BspMAI	CTGCAG	2 cut(s)	528, 1336
BspMI	ACCTGC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	944
BsrBI	CCGCTC	2 cut(s)	215, 286
BsrDI	GCAATG	3 cut(s)	128, 948, 1149
BsrFI	RCCGGY	3 cut(s)	419, 743, 1084
BsrI	ACTGG	2 cut(s)	584, 1243
BssAI	RCCGGY	3 cut(s)	419, 743, 1084
BssECI	CCNNGG	3 cut(s)	153, 261, 955
BssMI	GATC	4 cut(s)	31, 625, 1226, 1315
BssT1I	CCWWGG	2 cut(s)	153, 955
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	3 cut(s)	894, 1165, 1183
Bst6I	CTCTTC	1 cut(s)	904
BstAPI	GCANNNNNTGC	4 cut(s)	103, 199, 944, 1298
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	6 cut(s)	243, 364, 839, 977, 1099, 1329
BstDEI	CTNAG	8 cut(s)	35, 246, 312, 513, 963, 1037, 1134, 1319
BstDSI	CCRYGG	2 cut(s)	153, 261
BstF5I	GGATG	6 cut(s)	108, 132, 217, 387, 787, 1135
BstHHI	GCGC	1 cut(s)	1303
BstKTI	GATC	4 cut(s)	34, 628, 1229, 1318
BstMAI	GTCTC	2 cut(s)	315, 1075
BstMBI	GATC	4 cut(s)	31, 625, 1226, 1315
BstMCI	CGRYCG	1 cut(s)	748
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	4 cut(s)	202, 938, 1101, 1331
BstSCI	CCNGG	2 cut(s)	141, 423
BstSFI	CTRYAG	3 cut(s)	524, 654, 1332
BstV2I	GAAGAC	2 cut(s)	1038, 1344
BstX2I	RGATCY	1 cut(s)	1315
BstYI	RGATCY	1 cut(s)	1315
Bsu36I	CCTNAGG	1 cut(s)	1037
BsuRI	GGCC	8 cut(s)	5, 53, 152, 266, 334, 423, 803, 841
BtgI	CCRYGG	2 cut(s)	153, 261
BtgZI	GCGATG	2 cut(s)	146, 173
BtsCI	GGATG	6 cut(s)	108, 132, 217, 387, 787, 1135
BtsI	GCAGTG	2 cut(s)	104, 1226
BtsIMutI	CAGTG	3 cut(s)	104, 1226, 1250
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	6 cut(s)	243, 364, 839, 977, 1099, 1329
CfoI	GCGC	1 cut(s)	1303
Cfr10I	RCCGGY	3 cut(s)	419, 743, 1084
Cfr13I	GGNCC	5 cut(s)	4, 52, 332, 351, 840
Csp6I	GTAC	5 cut(s)	139, 184, 540, 895, 1288
CspAI	ACCGGT	2 cut(s)	743, 1084
CviAII	CATG	7 cut(s)	154, 199, 401, 844, 935, 1098, 1328
CviQI	GTAC	5 cut(s)	139, 184, 540, 895, 1288
DdeI	CTNAG	8 cut(s)	35, 246, 312, 513, 963, 1037, 1134, 1319
DpnI	GATC	4 cut(s)	33, 627, 1228, 1317
DpnII	GATC	4 cut(s)	31, 625, 1226, 1315
EaeI	YGGCCR	2 cut(s)	150, 421
Eam1104I	CTCTTC	1 cut(s)	904
EarI	CTCTTC	1 cut(s)	904
Eco130I	CCWWGG	2 cut(s)	153, 955
Eco24I	GRGCYC	1 cut(s)	981
Eco32I	GATATC	1 cut(s)	884
Eco47I	GGWCC	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	417
Eco72I	CACGTG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	1037
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	884
EcoT14I	CCWWGG	2 cut(s)	153, 955
EcoT22I	ATGCAT	2 cut(s)	108, 1329
EcoT38I	GRGCYC	1 cut(s)	981
ErhI	CCWWGG	2 cut(s)	153, 955
FaeI	CATG	7 cut(s)	157, 202, 404, 847, 938, 1101, 1331
FatI	CATG	7 cut(s)	153, 198, 400, 843, 934, 1097, 1327
FauI	CCCGC	2 cut(s)	195, 589
FokI	GGATG	6 cut(s)	115, 139, 204, 394, 794, 1142
FriOI	GRGCYC	1 cut(s)	981
FspBI	CTAG	2 cut(s)	618, 693
GlaI	GCGC	1 cut(s)	1302
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	8 cut(s)	5, 53, 152, 266, 334, 423, 803, 841
HapII	CCGG	4 cut(s)	143, 420, 744, 1085
HhaI	GCGC	1 cut(s)	1303
Hin1II	CATG	7 cut(s)	157, 202, 404, 847, 938, 1101, 1331
Hin6I	GCGC	1 cut(s)	1301
HinP1I	GCGC	1 cut(s)	1301
HinfI	GANTC	4 cut(s)	43, 1013, 1232, 1309
HpaII	CCGG	4 cut(s)	143, 420, 744, 1085
HphI	GGTGA	2 cut(s)	611, 1073
Hpy166II	GTNNAC	2 cut(s)	184, 932
Hpy188I	TCNGA	8 cut(s)	36, 468, 576, 625, 970, 1018, 1231, 1320
Hpy188III	TCNNGA	4 cut(s)	349, 731, 879, 1313
Hpy8I	GTNNAC	2 cut(s)	184, 932
HpyAV	CCTTC	3 cut(s)	407, 467, 1120
HpyCH4III	ACNGT	3 cut(s)	894, 1165, 1183
HpyCH4IV	ACGT	1 cut(s)	502
HpyF3I	CTNAG	8 cut(s)	35, 246, 312, 513, 963, 1037, 1134, 1319
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	7 cut(s)	157, 202, 404, 847, 938, 1101, 1331
HspAI	GCGC	1 cut(s)	1301
Kzo9I	GATC	4 cut(s)	31, 625, 1226, 1315
LweI	GCATC	7 cut(s)	93, 115, 123, 153, 232, 724, 1120
MaeI	CTAG	2 cut(s)	618, 693
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	599, 661, 1238
MalI	GATC	4 cut(s)	33, 627, 1228, 1317
MbiI	CCGCTC	2 cut(s)	215, 286
MboI	GATC	4 cut(s)	31, 625, 1226, 1315
MboII	GAAGA	5 cut(s)	337, 423, 891, 1043, 1344
MflI	RGATCY	1 cut(s)	1315
MhlI	GDGCHC	2 cut(s)	41, 981
MluCI	AATT	1 cut(s)	1055
MlyI	GAGTC	2 cut(s)	37, 1226
MmeI	TCCRAC	2 cut(s)	982, 1069
Mph1103I	ATGCAT	2 cut(s)	108, 1329
MseI	TTAA	3 cut(s)	711, 1344, 1357
MslI	CAYNNNNRTG	2 cut(s)	158, 939
MspA1I	CMGCKG	3 cut(s)	27, 512, 1337
MspI	CCGG	4 cut(s)	143, 420, 744, 1085
MspR9I	CCNGG	2 cut(s)	143, 425
Mva1269I	GAATGC	2 cut(s)	1144, 1162
MvaI	CCWGG	1 cut(s)	425
NciI	CCSGG	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	4 cut(s)	31, 625, 1226, 1315
NlaIII	CATG	7 cut(s)	157, 202, 404, 847, 938, 1101, 1331
NlaIV	GGNNCC	2 cut(s)	333, 946
NmuCI	GTSAC	2 cut(s)	599, 661
NsiI	ATGCAT	2 cut(s)	108, 1329
NspI	RCATGY	4 cut(s)	202, 938, 1101, 1331
PaeI	GCATGC	2 cut(s)	1101, 1331
PctI	GAATGC	2 cut(s)	1144, 1162
PfeI	GAWTC	2 cut(s)	1013, 1309
PflMI	CCANNNNNTGG	1 cut(s)	382
PinAI	ACCGGT	2 cut(s)	743, 1084
PleI	GAGTC	2 cut(s)	37, 1226
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
PpsI	GAGTC	2 cut(s)	37, 1226
Ppu21I	YACGTR	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	423
PspCI	CACGTG	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	333, 946
PspPI	GGNCC	5 cut(s)	4, 52, 332, 351, 840
PstI	CTGCAG	2 cut(s)	528, 1336
PsuI	RGATCY	1 cut(s)	1315
PvuII	CAGCTG	2 cut(s)	512, 1337
RsaI	GTAC	5 cut(s)	140, 185, 541, 896, 1289
RsaNI	GTAC	5 cut(s)	139, 184, 540, 895, 1288
RseI	CAYNNNNRTG	2 cut(s)	158, 939
SaqAI	TTAA	3 cut(s)	711, 1344, 1357
Sau3AI	GATC	4 cut(s)	31, 625, 1226, 1315
Sau96I	GGNCC	5 cut(s)	4, 52, 332, 351, 840
ScaI	AGTACT	1 cut(s)	896
SchI	GAGTC	2 cut(s)	37, 1226
ScrFI	CCNGG	2 cut(s)	143, 425
SduI	GDGCHC	2 cut(s)	41, 981
SfaNI	GCATC	7 cut(s)	93, 115, 123, 153, 232, 724, 1120
SfcI	CTRYAG	3 cut(s)	524, 654, 1332
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	2 cut(s)	158, 939
SmlI	CTYRAG	2 cut(s)	287, 1234
SmoI	CTYRAG	2 cut(s)	287, 1234
SpeI	ACTAGT	1 cut(s)	617
SphI	GCATGC	2 cut(s)	1101, 1331
Sse9I	AATT	1 cut(s)	1055
SspMI	CTAG	2 cut(s)	618, 693
StyD4I	CCNGG	2 cut(s)	141, 423
StyI	CCWWGG	2 cut(s)	153, 955
TaaI	ACNGT	3 cut(s)	894, 1165, 1183
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	833
TasI	AATT	1 cut(s)	1055
TatI	WGTACW	1 cut(s)	894
TauI	GCSGC	9 cut(s)	24, 30, 149, 152, 215, 257, 260, 283, 286
TfiI	GAWTC	2 cut(s)	1013, 1309
Tru1I	TTAA	3 cut(s)	711, 1344, 1357
Tru9I	TTAA	3 cut(s)	711, 1344, 1357
TscAI	CASTG	3 cut(s)	104, 1226, 1250
TseFI	GTSAC	2 cut(s)	599, 661
Tsp45I	GTSAC	2 cut(s)	599, 661
TspDTI	ATGAA	4 cut(s)	389, 798, 830, 1160
TspRI	CASTG	3 cut(s)	104, 1226, 1250
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	351
XceI	RCATGY	4 cut(s)	202, 938, 1101, 1331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1250
XspI	CTAG	2 cut(s)	618, 693
ZrmI	AGTACT	1 cut(s)	896
Zsp2I	ATGCAT	2 cut(s)	108, 1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.