Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004565

Physical Location & Seq

Genomic Coordinates Reverse (-)

8774507 .. 8779247

Gene Structure 4741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCCCAGCAATCCAACGGCGGCAGCGATCTGGGCCCTCAGCAGCAGCAGCAGCAACAACAGCAGCACCAGCAGCAGCAATGGATGCACCAGCAGCAATGGATGGCCATGCAGTACCCGGCGGCGGCGATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTTACGGGGCGGCTCCTCATCATCCTCACCACAATCCGTACCAGCAGCAGCCTCAGGCTGTGGCGTATCAGCAGCAACAGCAGCCGCCGAAGCAGCAGCAGTCGCCGTCACAAAAACAGGGGCCCAACGACGAGGTTAGGACCATCTGGGTTGGTGACCTTCATCATTGGATGGACGAGACTTACCTTCACGGATGCTTTGCGCACACTGGACAGGTTTCCTCAATTAAGGTAATACGCAATAAGCAAACTGGTCAGTCAGAGGGATATGGATTTGTTGAGTTCTATTCACGTGAAGCAGCTGAGGAAGTTTTACAGAACTATAACGGAACTGCAATGCCAAATACAGAGCAGCCTTTTCGTTTAAACTGGGCAACCTTCAGTGCCAGTGATAAACGAGCAGACACTAGTGCTGATCGATCGATCTTTGTAGGAGATTTGGCTACAGATGTCACTGACACTATGTTGCAGGAGACTTTTTCTAGTAGATATTCATCTGTTAAGGGAGCGAAAGTTGTTCTAGATGCAAATACCGGACGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGTCAAGGGCTATTGCCGAAATGAATGGTGCATATTGTTCAAGCAGGGCCATGCGCATCGGTGTTGCAACACCCAAAAAAGCACCTGCATATCAACAACAGTATTCTTCACAAGCATTGGTATTGGCTGGTGGTGGACATGCATCAAATGGTGTCGTCGCCCAAGGTTCCCAGTTTGACAGTGAGCCTAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGAGGTCAATGATGAAGACCTCCGGCAGCCTTTTTCTCATTTTGGTGAAGTTGTCTCTGTGAAAATACCAGTTGGAAAAGCGTGTGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAACGCAATACAGATGCTGAATGGAACGGTTATTGGCAAGCAAACAGTTCGACTTTCTTGGGGTCGCAGTCAGGGGAACAAGCAGTGGAGGTCGGATTCAAGTAACCAGTGGAATGGAGCACACTATGGAGGACAGGGCTATGGCGGGTATGGACATGCTGTGCCACAGGGTCAGGACCTGAGCATGCACACCGCAGCTGCAGTTAACGGGGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

441

Amino Acids

48.63

Weight (kDa)

6.59

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49600 AT1G49600 AT1G49600 AT3G19130
fragaria_vesca	FvH4_2g06660 FvH4_2g06660 FvH4_2g06660
malus_domestica	MD05G1076000.v1.1 MD10G1090700.v1.1
prunus_persica	Prupe.8G119500_v2.0.a1 Prupe.8G119500_v2.0.a1
pyrus_communis	pycom05g06950 pycom10g07420
rosa_chinensis	RchiOBHm_Chr4g0407821 RchiOBHm_Chr6g0258701
rosa_laevigata	RLG00000014588
rosa_multiflora	Rmu_ssc0000014.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352380 Rroxscaffold_7G00206030
rosa_rugosa	Rorug04G0081300 Rorug05G0582900 Rorug05G0583000 Rorug05G0583100
rosa_samantha	Rh4AG146600 Rh4BG144100 Rh4CG153100 Rh4DG140600 Rh6BG091100 Rh6DG082700
rosa_wichuraiana	Rw0G022700 Rw6G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	853
Acc16I	TGCGCA	2 cut(s)	381, 815
Acc36I	ACCTGC	1 cut(s)	853
AciI	CCGC	8 cut(s)	21, 122, 125, 164, 188, 263, 1248, 1296
AcoI	YGGCCR	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	541
AcvI	CACGTG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	116, 161, 218
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	720, 801, 1203
AhlI	ACTAGT	1 cut(s)	584
AluBI	AGCT	2 cut(s)	479, 1301
AluI	AGCT	2 cut(s)	479, 1301
Alw21I	GWGCWC	1 cut(s)	1225
Alw26I	GTCTC	3 cut(s)	350, 644, 1042
AlwNI	CAGNNNCTG	2 cut(s)	1120, 1282
AoxI	GGCC	5 cut(s)	3, 34, 105, 299, 807
ApaI	GGGCCC	2 cut(s)	38, 303
AspLEI	GCGC	2 cut(s)	382, 816
AspS9I	GGNCC	8 cut(s)	4, 34, 35, 299, 300, 318, 807, 1279
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	4 cut(s)	197, 344, 758, 1040
AvaII	GGWCC	2 cut(s)	318, 1279
AxyI	CCTNAGG	1 cut(s)	231
BaeGI	GKGCMC	2 cut(s)	38, 303
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	38, 303
BbrPI	CACGTG	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	1225
BbvCI	CCTCAGC	2 cut(s)	39, 480
BccI	CCATC	5 cut(s)	97, 124, 148, 329, 343
BceAI	ACGGC	2 cut(s)	34, 268
BcgI	CGANNNNNNTGC	4 cut(s)	518, 552, 1133, 1167
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	350, 644, 1042
BcuI	ACTAGT	1 cut(s)	584
BfaI	CTAG	3 cut(s)	585, 660, 698
BfmI	CTRYAG	2 cut(s)	621, 1302
BfuAI	ACCTGC	1 cut(s)	853
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	318, 1279
BmgT120I	GGNCC	8 cut(s)	4, 34, 35, 299, 300, 318, 807, 1279
BmiI	GGNNCC	5 cut(s)	36, 192, 300, 301, 928
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	2 cut(s)	556, 925
BmsI	GCATC	8 cut(s)	75, 129, 362, 691, 825, 911, 1087, 1107
BmuI	ACTGGG	2 cut(s)	556, 925
BpiI	GAAGAC	1 cut(s)	1005
Bpu10I	CCTNAGC	3 cut(s)	39, 480, 1283
BpuMI	CCSGG	1 cut(s)	119
Bsa29I	ATCGAT	2 cut(s)	595, 599
BsaAI	YACGTR	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	922
BsaWI	WCCGGW	1 cut(s)	710
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	7 cut(s)	391, 433, 551, 564, 931, 1052, 1210
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	3 cut(s)	86, 104, 519
Bse8I	GATNNNNATC	1 cut(s)	670
BseCI	ATCGAT	2 cut(s)	595, 599
BseDI	CCNNGG	1 cut(s)	922
BseGI	GGATG	6 cut(s)	90, 108, 199, 354, 377, 1102
BseJI	GATNNNNATC	1 cut(s)	670
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	3 cut(s)	86, 104, 519
BseMII	CTCAG	6 cut(s)	53, 245, 471, 975, 1092, 1274
BseNI	ACTGG	7 cut(s)	391, 433, 551, 564, 931, 1052, 1210
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	2 cut(s)	38, 303
BseYI	CCCAGC	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	599
BshFI	GGCC	5 cut(s)	5, 36, 107, 301, 809
BshVI	ATCGAT	2 cut(s)	595, 599
BsiEI	CGRYCG	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	1225
BsiSI	CCGG	3 cut(s)	119, 711, 1006
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	3 cut(s)	350, 644, 1042
BsnI	GGCC	5 cut(s)	5, 36, 107, 301, 809
Bsp120I	GGGCCC	2 cut(s)	34, 299
Bsp1286I	GDGCHC	3 cut(s)	38, 303, 1225
Bsp143I	GATC	4 cut(s)	28, 592, 596, 600
BspACI	CCGC	8 cut(s)	21, 122, 125, 164, 188, 263, 1248, 1296
BspANI	GGCC	5 cut(s)	5, 36, 107, 301, 809
BspCNI	CTCAG	6 cut(s)	52, 244, 472, 976, 1093, 1275
BspDI	ATCGAT	2 cut(s)	595, 599
BspLI	GGNNCC	5 cut(s)	36, 192, 300, 301, 928
BspMAI	CTGCAG	1 cut(s)	1306
BspMI	ACCTGC	1 cut(s)	853
BsrDI	GCAATG	3 cut(s)	86, 104, 519
BsrI	ACTGG	7 cut(s)	391, 433, 551, 564, 931, 1052, 1210
BssECI	CCNNGG	1 cut(s)	922
BssMI	GATC	4 cut(s)	28, 592, 596, 600
BssT1I	CCWWGG	1 cut(s)	922
Bst4CI	ACNGT	4 cut(s)	861, 941, 1132, 1150
BstAPI	GCANNNNNTGC	2 cut(s)	85, 175
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	1142, 1289
BstDEI	CTNAG	6 cut(s)	39, 231, 480, 984, 1101, 1283
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	6 cut(s)	90, 108, 199, 354, 377, 1102
BstHHI	GCGC	2 cut(s)	382, 816
BstKTI	GATC	4 cut(s)	31, 595, 599, 603
BstMAI	GTCTC	3 cut(s)	350, 644, 1042
BstMBI	GATC	4 cut(s)	28, 592, 596, 600
BstMCI	CGRYCG	1 cut(s)	599
BstNSI	RCATGY	4 cut(s)	178, 902, 1262, 1291
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	621, 1302
BstSLI	GKGCMC	2 cut(s)	38, 303
BstV2I	GAAGAC	1 cut(s)	1005
BstXI	CCANNNNNNTGG	1 cut(s)	1217
Bsu15I	ATCGAT	2 cut(s)	595, 599
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	5 cut(s)	5, 36, 107, 301, 809
BsuTUI	ATCGAT	2 cut(s)	595, 599
BtgZI	GCGATG	2 cut(s)	143, 149
BtsCI	GGATG	6 cut(s)	90, 108, 199, 354, 377, 1102
BtsI	GCAGTG	1 cut(s)	1193
BtsIMutI	CAGTG	7 cut(s)	384, 565, 571, 630, 946, 1193, 1217
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	2 cut(s)	1142, 1289
CaiI	CAGNNNCTG	2 cut(s)	1120, 1282
CfoI	GCGC	2 cut(s)	382, 816
Cfr13I	GGNCC	8 cut(s)	4, 34, 35, 299, 300, 318, 807, 1279
ClaI	ATCGAT	2 cut(s)	595, 599
Csp6I	GTAC	3 cut(s)	115, 160, 217
CviAII	CATG	6 cut(s)	109, 175, 811, 899, 1259, 1288
CviQI	GTAC	3 cut(s)	115, 160, 217
DdeI	CTNAG	6 cut(s)	39, 231, 480, 984, 1101, 1283
DpnI	GATC	4 cut(s)	30, 594, 598, 602
DpnII	GATC	4 cut(s)	28, 592, 596, 600
DraI	TTTAAA	1 cut(s)	543
EaeI	YGGCCR	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	922
Eco24I	GRGCYC	2 cut(s)	38, 303
Eco47I	GGWCC	2 cut(s)	318, 1279
Eco57I	CTGAAG	1 cut(s)	541
Eco72I	CACGTG	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	332
EcoO109I	RGGNCCY	3 cut(s)	35, 299, 1279
EcoO65I	GGTNACC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	922
EcoT22I	ATGCAT	1 cut(s)	904
EcoT38I	GRGCYC	2 cut(s)	38, 303
ErhI	CCWWGG	1 cut(s)	922
FaeI	CATG	6 cut(s)	112, 178, 814, 902, 1262, 1291
FatI	CATG	6 cut(s)	108, 174, 810, 898, 1258, 1287
FauI	CCCGC	2 cut(s)	171, 1241
FokI	GGATG	6 cut(s)	97, 115, 186, 361, 384, 1109
FriOI	GRGCYC	2 cut(s)	38, 303
FspAI	RTGCGCAY	1 cut(s)	815
FspBI	CTAG	3 cut(s)	585, 660, 698
FspI	TGCGCA	2 cut(s)	381, 815
GlaI	GCGC	2 cut(s)	381, 815
GsaI	CCCAGC	1 cut(s)	10
HaeIII	GGCC	5 cut(s)	5, 36, 107, 301, 809
HapII	CCGG	3 cut(s)	119, 711, 1006
HhaI	GCGC	2 cut(s)	382, 816
Hin1II	CATG	6 cut(s)	112, 178, 814, 902, 1262, 1291
Hin6I	GCGC	2 cut(s)	380, 814
HinP1I	GCGC	2 cut(s)	380, 814
HincII	GTYRAC	1 cut(s)	1309
HindII	GTYRAC	1 cut(s)	1309
HinfI	GANTC	2 cut(s)	980, 1199
HpaI	GTTAAC	1 cut(s)	1309
HpaII	CCGG	3 cut(s)	119, 711, 1006
HphI	GGTGA	4 cut(s)	197, 344, 758, 1040
Hpy166II	GTNNAC	3 cut(s)	160, 896, 1309
Hpy188I	TCNGA	3 cut(s)	439, 985, 1198
Hpy188III	TCNNGA	2 cut(s)	698, 1277
Hpy8I	GTNNAC	3 cut(s)	160, 896, 1309
Hpy99I	CGWCG	2 cut(s)	311, 920
HpyAV	CCTTC	4 cut(s)	347, 374, 565, 1087
HpyCH4III	ACNGT	4 cut(s)	861, 941, 1132, 1150
HpyCH4IV	ACGT	2 cut(s)	469, 715
HpyF3I	CTNAG	6 cut(s)	39, 231, 480, 984, 1101, 1283
HpySE526I	ACGT	2 cut(s)	469, 715
Hsp92II	CATG	6 cut(s)	112, 178, 814, 902, 1262, 1291
HspAI	GCGC	2 cut(s)	380, 814
KspAI	GTTAAC	1 cut(s)	1309
Kzo9I	GATC	4 cut(s)	28, 592, 596, 600
LmnI	GCTCC	3 cut(s)	196, 683, 1220
LweI	GCATC	8 cut(s)	75, 129, 362, 691, 825, 911, 1087, 1107
MaeI	CTAG	3 cut(s)	585, 660, 698
MaeII	ACGT	2 cut(s)	469, 715
MaeIII	GTNAC	4 cut(s)	285, 332, 628, 1205
MalI	GATC	4 cut(s)	30, 594, 598, 602
MboI	GATC	4 cut(s)	28, 592, 596, 600
MboII	GAAGA	2 cut(s)	858, 1010
MhlI	GDGCHC	3 cut(s)	38, 303, 1225
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	1 cut(s)	402
MluNI	TGGCCA	1 cut(s)	107
MmeI	TCCRAC	4 cut(s)	39, 949, 1036, 1176
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	904
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	5 cut(s)	405, 542, 678, 1308, 1321
MslI	CAYNNNNRTG	1 cut(s)	1026
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	479, 1301
MspI	CCGG	3 cut(s)	119, 711, 1006
MspR9I	CCNGG	1 cut(s)	119
MssI	GTTTAAAC	1 cut(s)	543
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	28, 592, 596, 600
NlaIII	CATG	6 cut(s)	112, 178, 814, 902, 1262, 1291
NlaIV	GGNNCC	5 cut(s)	36, 192, 300, 301, 928
NmuCI	GTSAC	3 cut(s)	285, 332, 628
NsbI	TGCGCA	2 cut(s)	381, 815
NsiI	ATGCAT	1 cut(s)	904
NspI	RCATGY	4 cut(s)	178, 902, 1262, 1291
PaeI	GCATGC	1 cut(s)	1291
PaqCI	CACCTGC	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	980, 1199
Ple19I	CGATCG	1 cut(s)	599
PmaCI	CACGTG	1 cut(s)	470
PmeI	GTTTAAAC	1 cut(s)	543
PmlI	CACGTG	1 cut(s)	470
Ppu21I	YACGTR	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	1279
Psp5II	RGGWCCY	1 cut(s)	1279
PspCI	CACGTG	1 cut(s)	470
PspEI	GGTNACC	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	6
PspN4I	GGNNCC	5 cut(s)	36, 192, 300, 301, 928
PspOMI	GGGCCC	2 cut(s)	34, 299
PspPI	GGNCC	8 cut(s)	4, 34, 35, 299, 300, 318, 807, 1279
PspPPI	RGGWCCY	1 cut(s)	1279
PstI	CTGCAG	1 cut(s)	1306
PstNI	CAGNNNCTG	2 cut(s)	1120, 1282
PvuI	CGATCG	1 cut(s)	599
PvuII	CAGCTG	2 cut(s)	479, 1301
RsaI	GTAC	3 cut(s)	116, 161, 218
RsaNI	GTAC	3 cut(s)	115, 160, 217
RseI	CAYNNNNRTG	1 cut(s)	1026
SaqAI	TTAA	5 cut(s)	405, 542, 678, 1308, 1321
Sau3AI	GATC	4 cut(s)	28, 592, 596, 600
Sau96I	GGNCC	8 cut(s)	4, 34, 35, 299, 300, 318, 807, 1279
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	3 cut(s)	38, 303, 1225
SfaNI	GCATC	8 cut(s)	75, 129, 362, 691, 825, 911, 1087, 1107
SfcI	CTRYAG	2 cut(s)	621, 1302
SinI	GGWCC	2 cut(s)	318, 1279
SmiMI	CAYNNNNRTG	1 cut(s)	1026
SpeI	ACTAGT	1 cut(s)	584
SphI	GCATGC	1 cut(s)	1291
Sse9I	AATT	1 cut(s)	402
SsiI	CCGC	8 cut(s)	21, 122, 125, 164, 188, 263, 1248, 1296
SspMI	CTAG	3 cut(s)	585, 660, 698
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	4 cut(s)	861, 941, 1132, 1150
TaiI	ACGT	2 cut(s)	472, 718
TaqI	TCGA	3 cut(s)	595, 599, 1153
TasI	AATT	1 cut(s)	402
TauI	GCSGC	5 cut(s)	24, 125, 128, 191, 265
TfiI	GAWTC	2 cut(s)	980, 1199
Tru1I	TTAA	5 cut(s)	405, 542, 678, 1308, 1321
Tru9I	TTAA	5 cut(s)	405, 542, 678, 1308, 1321
TscAI	CASTG	7 cut(s)	391, 565, 571, 637, 946, 1193, 1217
TseFI	GTSAC	3 cut(s)	285, 332, 628
Tsp45I	GTSAC	3 cut(s)	285, 332, 628
TspDTI	ATGAA	5 cut(s)	329, 660, 765, 797, 1011
TspGWI	ACGGA	3 cut(s)	204, 384, 519
TspRI	CASTG	7 cut(s)	391, 565, 571, 637, 946, 1193, 1217
VpaK11BI	GGWCC	2 cut(s)	318, 1279
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	4 cut(s)	178, 902, 1262, 1291
XspI	CTAG	3 cut(s)	585, 660, 698
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.