Rh4DG140600

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004565
Physical Location & Seq
Forward (+)
27890604 .. 27893416
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG140600.1

Sequence Viewer

Length: 519 bp
ATGAATGGTGCATATTGTTCGAGCAGGCCCATGCGTATAGGTGTTGCAATGCCAAAAAATCATCTGGATATCAACAACAGATTGGTATTGGCTGGAGGTGGTGGACATGCAAATGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCCTGATTCTGATGTCAATGAGGAAGACCTCAGGCAGCCATGTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACACAAATGCTGCGCCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

172

Amino Acids

18.23

Weight (kDa)

7.6

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 56 - 119 1.1e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 2 cut(s) 273, 513
AfaI GTAC 1 cut(s) 461
AgeI ACCGGT 1 cut(s) 256
AluBI AGCT 1 cut(s) 510
AluI AGCT 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 2 cut(s) 26, 179
ApeKI GCWGC 5 cut(s) 214, 470, 504, 507, 510
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
AsiGI ACCGGT 1 cut(s) 256
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 2 cut(s) 27, 179
AsuHPI GGTGA 1 cut(s) 245
AxyI CCTNAGG 1 cut(s) 209
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 4 cut(s) 226, 457, 491, 497
BccI CCATC 1 cut(s) 137
BcgI CGANNNNNNTGC 3 cut(s) 34, 338, 372
BcoDI GTCTC 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 505
BglII AGATCT 1 cut(s) 488
BisI GCNGC 5 cut(s) 215, 471, 505, 508, 511
BlsI GCNGC 5 cut(s) 216, 472, 506, 509, 512
BmgT120I GGNCC 2 cut(s) 27, 179
BmiI GGNNCC 1 cut(s) 118
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 415
Bse21I CCTNAGG 1 cut(s) 209
Bse3DI GCAATG 3 cut(s) 54, 120, 321
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 307
BseMI GCAATG 3 cut(s) 54, 120, 321
BseMII CTCAG 4 cut(s) 149, 223, 297, 483
BseNI ACTGG 1 cut(s) 415
BseXI GCAGC 4 cut(s) 226, 457, 491, 497
BshFI GGCC 2 cut(s) 28, 181
BshNI GGYRCC 1 cut(s) 116
BshTI ACCGGT 1 cut(s) 256
BsiSI CCGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 247
BsmI GAATGC 2 cut(s) 316, 334
BsnI GGCC 2 cut(s) 28, 181
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 398, 488
BspACI CCGC 2 cut(s) 273, 513
BspANI GGCC 2 cut(s) 28, 181
BspCNI CTCAG 4 cut(s) 148, 222, 298, 484
BspLI GGNNCC 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 3 cut(s) 54, 120, 321
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 398, 488
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 337, 355
BstAPI GCANNNNNTGC 1 cut(s) 116
BstC8I GCNNGC 4 cut(s) 26, 149, 271, 502
BstDEI CTNAG 4 cut(s) 135, 209, 306, 492
BstF5I GGATG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 2 cut(s) 401, 491
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 398, 488
BstMWI GCNNNNNNNGC 4 cut(s) 116, 311, 381, 510
BstNSI RCATGY 3 cut(s) 110, 273, 504
BstSFI CTRYAG 1 cut(s) 505
BstV1I GCAGC 4 cut(s) 226, 457, 491, 497
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
Bsu36I CCTNAGG 1 cut(s) 209
BsuRI GGCC 2 cut(s) 28, 181
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 2 cut(s) 398, 422
Cac8I GCNNGC 4 cut(s) 26, 149, 271, 502
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 27, 179
Csp6I GTAC 1 cut(s) 460
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 5 cut(s) 31, 107, 219, 270, 501
CviJI RGCY 6 cut(s) 28, 92, 151, 181, 217, 510
CviKI_1 RGCY 6 cut(s) 28, 92, 151, 181, 217, 510
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 4 cut(s) 135, 209, 306, 492
DpnI GATC 2 cut(s) 400, 490
DpnII GATC 2 cut(s) 398, 488
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 179
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 5 cut(s) 34, 110, 222, 273, 504
FatI CATG 5 cut(s) 30, 106, 218, 269, 500
Fnu4HI GCNGC 5 cut(s) 215, 471, 505, 508, 511
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 215, 471, 505, 508, 511
GlaI GCGC 1 cut(s) 474
GluI GCNGC 5 cut(s) 215, 471, 505, 508, 511
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 2 cut(s) 28, 181
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 475
Hin1II CATG 5 cut(s) 34, 110, 222, 273, 504
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HinfI GANTC 3 cut(s) 185, 404, 482
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 104, 462
Hpy188I TCNGA 4 cut(s) 142, 190, 403, 493
Hpy188III TCNNGA 2 cut(s) 65, 486
Hpy8I GTNNAC 2 cut(s) 104, 462
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 337, 355
HpyCH4V TGCA 7 cut(s) 11, 47, 110, 314, 332, 500, 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 311, 381, 510
HpyF3I CTNAG 4 cut(s) 135, 209, 306, 492
Hsp92II CATG 5 cut(s) 34, 110, 222, 273, 504
HspAI GCGC 1 cut(s) 473
Kzo9I GATC 2 cut(s) 398, 488
LpnPI CCDG 9 cut(s) 10, 50, 78, 195, 196, 270, 428, 431, 499
Lsp1109I GCAGC 4 cut(s) 226, 457, 491, 497
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 410
MalI GATC 2 cut(s) 400, 490
MboI GATC 2 cut(s) 398, 488
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 227
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 154, 241
MnlI CCTC 6 cut(s) 89, 170, 193, 218, 422, 434
Mph1103I ATGCAT 1 cut(s) 502
MseI TTAA 1 cut(s) 517
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 510
MspI CCGG 1 cut(s) 257
Mva1269I GAATGC 2 cut(s) 316, 334
MwoI GCNNNNNNNGC 4 cut(s) 116, 311, 381, 510
NdeII GATC 2 cut(s) 398, 488
NlaIII CATG 5 cut(s) 34, 110, 222, 273, 504
NlaIV GGNNCC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 3 cut(s) 110, 273, 504
PaeI GCATGC 2 cut(s) 273, 504
PctI GAATGC 2 cut(s) 316, 334
PfeI GAWTC 2 cut(s) 185, 482
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 5 cut(s) 216, 472, 506, 509, 512
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 27, 179
PstI CTGCAG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 510
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 517
SatI GCNGC 5 cut(s) 215, 471, 505, 508, 511
Sau3AI GATC 2 cut(s) 398, 488
Sau96I GGNCC 2 cut(s) 27, 179
SchI GAGTC 1 cut(s) 398
SduI GDGCHC 1 cut(s) 153
SetI ASST 5 cut(s) 43, 100, 133, 210, 512
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SphI GCATGC 2 cut(s) 273, 504
Sse9I AATT 1 cut(s) 227
SsiI CCGC 2 cut(s) 273, 513
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 337, 355
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 227
TfiI GAWTC 2 cut(s) 185, 482
Tru1I TTAA 1 cut(s) 517
Tru9I TTAA 1 cut(s) 517
TscAI CASTG 2 cut(s) 398, 422
TseI GCWGC 5 cut(s) 214, 470, 504, 507, 510
TspDTI ATGAA 2 cut(s) 17, 332
TspRI CASTG 2 cut(s) 398, 422
XceI RCATGY 3 cut(s) 110, 273, 504
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.