Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004565

Physical Location & Seq

Genomic Coordinates Forward (+)

14650602 .. 14656503

Gene Structure 5902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G119500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCCCAGCAATCCAACGGCGGCGATCTGGGCACACAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAGCAGTGGATGCATCAGCATCAGCATCAGCAGCAATGGATGGCCATGCAGTACCCAGCAGCCGCGATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTTACGCTGCTGCAGCTGCCCATCCTCATCATCCTCATCACAATCCCTACCAGCAGCAGCCTCAGGGCGTGCCTTATCAGCAGCAGCAGCAGCCGCCGAAGCAGCTGCAGCAGTCTCCCTCTCAGAAACAGGGGCCCACCGATGAGATCAGGACCATCTGGGTGGGCGACCTTCACCACTGGATGGACGAGACTTACCTTCATGGATGCTTTGCTCACACTGGGCAGGTTTCCACAGTAAAGGTTATACGCAATAAGCAAACTGCTCAGTCTGAAGGATATGGATTTGTCGAGTTCTTTTCACGTGAAGCAGCTGAAGAAGTTCTGCAGAGCTATAATGGTGCTGCAATGCCGAATACAGAGCAGCCTTTTCGTTTGAACTGGGCAACCTTCAGTGCTGGGGATAGACGAGCAGACACTAGTTCTGATCTATCTATCTTTGTAGGAGATTTGGCTACAGATGTGACTGATACTATGTTGCAGGAGACCTTTGGTAGTAGATATTCATCTGTCAAGGGAGCGAAAGTTGTTCTAGATGCAAATACTGGTCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGTCAAGGGCCATCACTGAAATGAATGGTGCGTATTGTTCGAGCAGGCCCATGCGCATAGGTGTTGCAACACCCAAAAAATCACCTGCTTATCAGCAACAGTATTCTTCACAAGCATTGGTATTAGCTGGTGGTGGACATGCATCAAATGGCGCTGTTGCTCAAGGTTCCCAGTTTGATAGTGAGACCAATAACACAACTATATTTGTTGGAGGGCTTGATTCGGATGTCAATGATGAAGACCTCAGGCAGCCTTTTTCTCAATTTGGTGAAGTTGTCTCGGTGAAAATACCAGTCGGAAAAGCATGCGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAATGCAATGCAGATGCTGAATGGAACTGTTATTGGAAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAGTCAGGGGAACAAGCAGTGGAGATCCGATTCAAGTAACCAGTGGAATGGGGCACATTATGGAGGACAGGGTTATGGTGGTTACGGACATGCTGCGCCACAGAGTCAGGACCTGAGCATGCATGCTGCAGCCGCCGTTCATGGGGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

450

Amino Acids

49.66

Weight (kDa)

6.52

Isoelectric Point (pI)

60.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49600 AT1G49600 AT1G49600 AT3G19130
fragaria_vesca	FvH4_2g06660 FvH4_2g06660 FvH4_2g06660
malus_domestica	MD05G1076000.v1.1 MD10G1090700.v1.1
prunus_persica	Prupe.8G119500_v2.0.a1 Prupe.8G119500_v2.0.a1
pyrus_communis	pycom05g06950 pycom10g07420
rosa_chinensis	RchiOBHm_Chr4g0407821 RchiOBHm_Chr6g0258701
rosa_laevigata	RLG00000014588
rosa_multiflora	Rmu_ssc0000014.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352380 Rroxscaffold_7G00206030
rosa_rugosa	Rorug04G0081300 Rorug05G0582900 Rorug05G0583000 Rorug05G0583100
rosa_samantha	Rh4AG146600 Rh4BG144100 Rh4CG153100 Rh4DG140600 Rh6BG091100 Rh6DG082700
rosa_wichuraiana	Rw0G022700 Rw6G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	880
Acc16I	TGCGCA	1 cut(s)	842
Acc36I	ACCTGC	2 cut(s)	409, 880
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccII	CGCG	1 cut(s)	143
AciI	CCGC	7 cut(s)	21, 141, 179, 287, 1095, 1195, 1329
AclWI	GGATC	1 cut(s)	1215
AcoI	YGGCCR	1 cut(s)	120
AcuI	CTGAAG	3 cut(s)	486, 528, 568
AcvI	CACGTG	1 cut(s)	497
AfaI	GTAC	2 cut(s)	131, 176
AfiI	CCNNNNNNNGG	3 cut(s)	376, 1201, 1338
AgsI	TTSAA	3 cut(s)	571, 747, 1230
AhlI	ACTAGT	1 cut(s)	611
AluBI	AGCT	5 cut(s)	209, 298, 506, 525, 914
AluI	AGCT	5 cut(s)	209, 298, 506, 525, 914
Alw26I	GTCTC	5 cut(s)	312, 377, 671, 965, 1069
AlwI	GGATC	1 cut(s)	1215
AlwNI	CAGNNNCTG	2 cut(s)	1147, 1309
AoxI	GGCC	6 cut(s)	3, 120, 326, 795, 833, 1192
ApaI	GGGCCC	1 cut(s)	330
ArsI	GACNNNNNNTTYG	2 cut(s)	1165, 1197
Asp700I	GAANNNNTTC	1 cut(s)	513
AspLEI	GCGC	3 cut(s)	843, 941, 1294
AspS9I	GGNCC	8 cut(s)	4, 326, 327, 345, 795, 834, 1192, 1306
AsuHPI	GGTGA	5 cut(s)	359, 785, 861, 1067, 1081
AvaII	GGWCC	2 cut(s)	345, 1306
AxyI	CCTNAGG	2 cut(s)	255, 1031
BaeGI	GKGCMC	3 cut(s)	35, 330, 1252
BalI	TGGCCA	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	330
BbrPI	CACGTG	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	1032
BccI	CCATC	7 cut(s)	112, 139, 163, 222, 356, 370, 806
BceAI	ACGGC	2 cut(s)	34, 1316
BcgI	CGANNNNNNTGC	6 cut(s)	280, 314, 545, 579, 1160, 1194
BcoDI	GTCTC	5 cut(s)	312, 377, 671, 965, 1069
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	2 cut(s)	612, 725
BfmI	CTRYAG	5 cut(s)	204, 299, 518, 648, 1323
BfoI	RGCGCY	1 cut(s)	942
BfuAI	ACCTGC	2 cut(s)	409, 880
BglI	GCCNNNNNGGC	1 cut(s)	146
Bme18I	GGWCC	2 cut(s)	345, 1306
BmgT120I	GGNCC	8 cut(s)	4, 326, 327, 345, 795, 834, 1192, 1306
BmiI	GGNNCC	4 cut(s)	327, 328, 955, 1193
BmrI	ACTGGG	3 cut(s)	423, 583, 952
BmuI	ACTGGG	3 cut(s)	423, 583, 952
BpiI	GAAGAC	1 cut(s)	1032
Bpu10I	CCTNAGC	1 cut(s)	1310
BpuEI	CTTGAG	1 cut(s)	933
BsaAI	YACGTR	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	697
BsaI	GGTCTC	2 cut(s)	671, 965
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 1201, 1338
Bse1I	ACTGG	7 cut(s)	377, 418, 578, 742, 958, 1079, 1237
Bse21I	CCTNAGG	2 cut(s)	255, 1031
Bse3DI	GCAATG	3 cut(s)	119, 546, 1143
Bse8I	GATNNNNATC	1 cut(s)	697
BseGI	GGATG	8 cut(s)	93, 123, 214, 223, 381, 404, 1018, 1129
BseJI	GATNNNNATC	1 cut(s)	697
BseLI	CCNNNNNNNGG	3 cut(s)	376, 1201, 1338
BseMI	GCAATG	3 cut(s)	119, 546, 1143
BseMII	CTCAG	6 cut(s)	269, 329, 473, 1045, 1119, 1301
BseNI	ACTGG	7 cut(s)	377, 418, 578, 742, 958, 1079, 1237
BseSI	GKGCMC	3 cut(s)	35, 330, 1252
BseYI	CCCAGC	3 cut(s)	6, 133, 590
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	6 cut(s)	5, 122, 328, 797, 835, 1194
BslI	CCNNNNNNNGG	3 cut(s)	376, 1201, 1338
BsmAI	GTCTC	5 cut(s)	312, 377, 671, 965, 1069
BsmI	GAATGC	1 cut(s)	1138
BsnI	GGCC	6 cut(s)	5, 122, 328, 797, 835, 1194
Bso31I	GGTCTC	2 cut(s)	671, 965
Bsp120I	GGGCCC	1 cut(s)	326
Bsp1286I	GDGCHC	3 cut(s)	35, 330, 1252
Bsp143I	GATC	4 cut(s)	25, 339, 619, 1220
BspACI	CCGC	7 cut(s)	21, 141, 179, 287, 1095, 1195, 1329
BspANI	GGCC	6 cut(s)	5, 122, 328, 797, 835, 1194
BspCNI	CTCAG	6 cut(s)	268, 328, 472, 1044, 1120, 1302
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	4 cut(s)	327, 328, 955, 1193
BspMAI	CTGCAG	4 cut(s)	208, 303, 522, 1327
BspMI	ACCTGC	2 cut(s)	409, 880
BspPI	GGATC	1 cut(s)	1215
BspTNI	GGTCTC	2 cut(s)	671, 965
BsrDI	GCAATG	3 cut(s)	119, 546, 1143
BsrI	ACTGG	7 cut(s)	377, 418, 578, 742, 958, 1079, 1237
BssMI	GATC	4 cut(s)	25, 339, 619, 1220
Bst4CI	ACNGT	4 cut(s)	430, 888, 1159, 1177
BstAPI	GCANNNNNTGC	2 cut(s)	88, 190
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	5 cut(s)	263, 833, 1093, 1316, 1320
BstDEI	CTNAG	6 cut(s)	255, 315, 459, 1031, 1128, 1310
BstF5I	GGATG	8 cut(s)	93, 123, 214, 223, 381, 404, 1018, 1129
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	942
BstHHI	GCGC	3 cut(s)	843, 941, 1294
BstKTI	GATC	4 cut(s)	28, 342, 622, 1223
BstMAI	GTCTC	5 cut(s)	312, 377, 671, 965, 1069
BstMBI	GATC	4 cut(s)	25, 339, 619, 1220
BstNSI	RCATGY	6 cut(s)	193, 929, 1095, 1289, 1318, 1322
BstSFI	CTRYAG	5 cut(s)	204, 299, 518, 648, 1323
BstSLI	GKGCMC	3 cut(s)	35, 330, 1252
BstUI	CGCG	1 cut(s)	143
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	1 cut(s)	1220
BstXI	CCANNNNNNTGG	2 cut(s)	355, 1244
BstYI	RGATCY	1 cut(s)	1220
Bsu36I	CCTNAGG	2 cut(s)	255, 1031
BsuRI	GGCC	6 cut(s)	5, 122, 328, 797, 835, 1194
BtgZI	GCGATG	2 cut(s)	158, 164
BtsCI	GGATG	8 cut(s)	93, 123, 214, 223, 381, 404, 1018, 1129
BtsI	GCAGTG	2 cut(s)	89, 1220
BtsIMutI	CAGTG	7 cut(s)	89, 370, 411, 592, 801, 1220, 1244
BveI	ACCTGC	2 cut(s)	409, 880
Cac8I	GCNNGC	5 cut(s)	263, 833, 1093, 1316, 1320
CaiI	CAGNNNCTG	2 cut(s)	1147, 1309
CfoI	GCGC	3 cut(s)	843, 941, 1294
Cfr13I	GGNCC	8 cut(s)	4, 326, 327, 345, 795, 834, 1192, 1306
Csp6I	GTAC	2 cut(s)	130, 175
CviQI	GTAC	2 cut(s)	130, 175
DdeI	CTNAG	6 cut(s)	255, 315, 459, 1031, 1128, 1310
DpnI	GATC	4 cut(s)	27, 341, 621, 1222
DpnII	GATC	4 cut(s)	25, 339, 619, 1220
EaeI	YGGCCR	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	2 cut(s)	671, 965
Eco47I	GGWCC	2 cut(s)	345, 1306
Eco57I	CTGAAG	3 cut(s)	486, 528, 568
Eco72I	CACGTG	1 cut(s)	497
Eco81I	CCTNAGG	2 cut(s)	255, 1031
EcoO109I	RGGNCCY	2 cut(s)	326, 1306
EcoT22I	ATGCAT	3 cut(s)	93, 931, 1320
EcoT38I	GRGCYC	1 cut(s)	330
FauI	CCCGC	1 cut(s)	186
FokI	GGATG	8 cut(s)	100, 130, 201, 210, 388, 411, 1025, 1136
FriOI	GRGCYC	1 cut(s)	330
FspAI	RTGCGCAY	1 cut(s)	842
FspBI	CTAG	2 cut(s)	612, 725
FspI	TGCGCA	1 cut(s)	842
GlaI	GCGC	3 cut(s)	842, 940, 1293
GsaI	CCCAGC	3 cut(s)	10, 137, 594
HaeII	RGCGCY	1 cut(s)	942
HaeIII	GGCC	6 cut(s)	5, 122, 328, 797, 835, 1194
HhaI	GCGC	3 cut(s)	843, 941, 1294
Hin6I	GCGC	3 cut(s)	841, 939, 1292
HinP1I	GCGC	3 cut(s)	841, 939, 1292
HinfI	GANTC	3 cut(s)	1007, 1226, 1300
HphI	GGTGA	5 cut(s)	359, 785, 861, 1067, 1081
Hpy166II	GTNNAC	2 cut(s)	175, 923
Hpy188I	TCNGA	6 cut(s)	318, 466, 619, 1012, 1085, 1225
Hpy188III	TCNNGA	3 cut(s)	343, 725, 1304
Hpy8I	GTNNAC	2 cut(s)	175, 923
HpyAV	CCTTC	5 cut(s)	374, 401, 461, 592, 1114
HpyCH4III	ACNGT	4 cut(s)	430, 888, 1159, 1177
HpyCH4IV	ACGT	1 cut(s)	496
HpyF3I	CTNAG	6 cut(s)	255, 315, 459, 1031, 1128, 1310
HpySE526I	ACGT	1 cut(s)	496
HspAI	GCGC	3 cut(s)	841, 939, 1292
Kzo9I	GATC	4 cut(s)	25, 339, 619, 1220
LmnI	GCTCC	1 cut(s)	710
MaeI	CTAG	2 cut(s)	612, 725
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	3 cut(s)	655, 1232, 1277
MalI	GATC	4 cut(s)	27, 341, 621, 1222
MboI	GATC	4 cut(s)	25, 339, 619, 1220
MboII	GAAGA	3 cut(s)	521, 885, 1037
MflI	RGATCY	1 cut(s)	1220
MhlI	GDGCHC	3 cut(s)	35, 330, 1252
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	1 cut(s)	1049
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	1309
MmeI	TCCRAC	3 cut(s)	39, 976, 1063
MnlI	CCTC	8 cut(s)	228, 237, 264, 322, 780, 992, 1040, 1253
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	3 cut(s)	93, 931, 1320
MroXI	GAANNNNTTC	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	1348
MslI	CAYNNNNRTG	2 cut(s)	353, 806
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	3 cut(s)	209, 298, 506
Mva1269I	GAATGC	1 cut(s)	1138
MvnI	CGCG	1 cut(s)	143
NdeII	GATC	4 cut(s)	25, 339, 619, 1220
NlaIV	GGNNCC	4 cut(s)	327, 328, 955, 1193
NmuCI	GTSAC	1 cut(s)	655
NsbI	TGCGCA	1 cut(s)	842
NsiI	ATGCAT	3 cut(s)	93, 931, 1320
NspI	RCATGY	6 cut(s)	193, 929, 1095, 1289, 1318, 1322
PaeI	GCATGC	3 cut(s)	1095, 1318, 1322
PaqCI	CACCTGC	1 cut(s)	880
PctI	GAATGC	1 cut(s)	1138
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	2 cut(s)	1007, 1226
PflMI	CCANNNNNTGG	1 cut(s)	376
PleI	GAGTC	1 cut(s)	1308
PmaCI	CACGTG	1 cut(s)	497
PmlI	CACGTG	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	1308
Ppu21I	YACGTR	1 cut(s)	497
PpuMI	RGGWCCY	1 cut(s)	1306
Psp5II	RGGWCCY	1 cut(s)	1306
PspCI	CACGTG	1 cut(s)	497
PspFI	CCCAGC	3 cut(s)	6, 133, 590
PspN4I	GGNNCC	4 cut(s)	327, 328, 955, 1193
PspOMI	GGGCCC	1 cut(s)	326
PspPI	GGNCC	8 cut(s)	4, 326, 327, 345, 795, 834, 1192, 1306
PspPPI	RGGWCCY	1 cut(s)	1306
PstI	CTGCAG	4 cut(s)	208, 303, 522, 1327
PstNI	CAGNNNCTG	2 cut(s)	1147, 1309
PsuI	RGATCY	1 cut(s)	1220
PvuII	CAGCTG	3 cut(s)	209, 298, 506
RsaI	GTAC	2 cut(s)	131, 176
RsaNI	GTAC	2 cut(s)	130, 175
RseI	CAYNNNNRTG	2 cut(s)	353, 806
SaqAI	TTAA	1 cut(s)	1348
Sau3AI	GATC	4 cut(s)	25, 339, 619, 1220
Sau96I	GGNCC	8 cut(s)	4, 326, 327, 345, 795, 834, 1192, 1306
SchI	GAGTC	1 cut(s)	1309
SduI	GDGCHC	3 cut(s)	35, 330, 1252
SfcI	CTRYAG	5 cut(s)	204, 299, 518, 648, 1323
SinI	GGWCC	2 cut(s)	345, 1306
SmiMI	CAYNNNNRTG	2 cut(s)	353, 806
SmlI	CTYRAG	1 cut(s)	948
SmoI	CTYRAG	1 cut(s)	948
SpeI	ACTAGT	1 cut(s)	611
SphI	GCATGC	3 cut(s)	1095, 1318, 1322
Sse9I	AATT	1 cut(s)	1049
SsiI	CCGC	7 cut(s)	21, 141, 179, 287, 1095, 1195, 1329
SspMI	CTAG	2 cut(s)	612, 725
TaaI	ACNGT	4 cut(s)	430, 888, 1159, 1177
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	483, 827
TasI	AATT	1 cut(s)	1049
TauI	GCSGC	5 cut(s)	24, 143, 289, 1197, 1331
TfiI	GAWTC	2 cut(s)	1007, 1226
Tru1I	TTAA	1 cut(s)	1348
Tru9I	TTAA	1 cut(s)	1348
TscAI	CASTG	7 cut(s)	89, 377, 418, 592, 808, 1220, 1244
TseFI	GTSAC	1 cut(s)	655
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	6 cut(s)	383, 687, 792, 824, 1038, 1325
TspGWI	ACGGA	1 cut(s)	1296
TspRI	CASTG	7 cut(s)	89, 377, 418, 592, 808, 1220, 1244
Van91I	CCANNNNNTGG	1 cut(s)	376
VpaK11BI	GGWCC	2 cut(s)	345, 1306
XbaI	TCTAGA	1 cut(s)	724
XceI	RCATGY	6 cut(s)	193, 929, 1095, 1289, 1318, 1322
XmnI	GAANNNNTTC	1 cut(s)	513
XspI	CTAG	2 cut(s)	612, 725
Zsp2I	ATGCAT	3 cut(s)	93, 931, 1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.