Rw0G022700

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01055
OG0004565
Physical Location & Seq
Reverse (-)
39956 .. 43037
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022700.1

Sequence Viewer

Length: 612 bp
ATGGTTGCTGATCTTGAAATGGATAAAGTTGCCCTGGAATGTGATTCTGAAGTGTTGGTTAATCTGATGAATAGTGGATTTGATGATATGCACCCTGTGAAGACGGCCCATGCGTATAGGTGTTGCAATGCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGGATTGGTATTGGCTGGAGGTGGTGGACATGCAAATGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCCTGATTCTGATGTCAATGAGGAAGACCTCAGGCAGCCATGTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACACAAATGCTGCGCCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

203

Amino Acids

21.63

Weight (kDa)

5.33

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 87 - 150 1.6e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 2 cut(s) 366, 606
AcuI CTGAAG 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 2 cut(s) 161, 554
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 603
AluI AGCT 1 cut(s) 603
Alw26I GTCTC 1 cut(s) 340
AoxI GGCC 2 cut(s) 105, 272
ApeKI GCWGC 5 cut(s) 307, 563, 597, 600, 603
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
AsiGI ACCGGT 1 cut(s) 349
AspLEI GCGC 1 cut(s) 568
AspS9I GGNCC 2 cut(s) 106, 272
AsuHPI GGTGA 1 cut(s) 338
AxyI CCTNAGG 1 cut(s) 302
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 107, 303
BbvI GCAGC 4 cut(s) 319, 550, 584, 590
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 340
BfmI CTRYAG 1 cut(s) 598
BglII AGATCT 1 cut(s) 581
BisI GCNGC 5 cut(s) 308, 564, 598, 601, 604
BlsI GCNGC 5 cut(s) 309, 565, 599, 602, 605
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 106, 272
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 2 cut(s) 107, 303
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 33, 220
BsaWI WCCGGW 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 508
Bse21I CCTNAGG 1 cut(s) 302
Bse3DI GCAATG 3 cut(s) 133, 213, 414
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 33, 220
BseGI GGATG 1 cut(s) 400
BseMI GCAATG 3 cut(s) 133, 213, 414
BseMII CTCAG 4 cut(s) 242, 316, 390, 576
BseNI ACTGG 1 cut(s) 508
BseXI GCAGC 4 cut(s) 319, 550, 584, 590
BshFI GGCC 2 cut(s) 107, 274
BshNI GGYRCC 1 cut(s) 209
BshTI ACCGGT 1 cut(s) 349
BsiSI CCGG 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 340
BsmI GAATGC 2 cut(s) 409, 427
BsnI GGCC 2 cut(s) 107, 274
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 3 cut(s) 10, 491, 581
BspACI CCGC 2 cut(s) 366, 606
BspANI GGCC 2 cut(s) 107, 274
BspCNI CTCAG 4 cut(s) 241, 315, 391, 577
BspLI GGNNCC 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 209
BsrDI GCAATG 3 cut(s) 133, 213, 414
BsrFI RCCGGY 1 cut(s) 349
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 33, 220
BssMI GATC 3 cut(s) 10, 491, 581
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 3 cut(s) 159, 430, 448
Bst6I CTCTTC 1 cut(s) 169
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 242, 364, 595
BstDEI CTNAG 4 cut(s) 228, 302, 399, 585
BstF5I GGATG 1 cut(s) 400
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 3 cut(s) 13, 494, 584
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 3 cut(s) 10, 491, 581
BstMWI GCNNNNNNNGC 4 cut(s) 209, 404, 474, 603
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 3 cut(s) 203, 366, 597
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 598
BstV1I GCAGC 4 cut(s) 319, 550, 584, 590
BstV2I GAAGAC 2 cut(s) 107, 303
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
Bsu36I CCTNAGG 1 cut(s) 302
BsuRI GGCC 2 cut(s) 107, 274
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 2 cut(s) 491, 515
Cac8I GCNNGC 3 cut(s) 242, 364, 595
CfoI GCGC 1 cut(s) 568
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 106, 272
Csp6I GTAC 2 cut(s) 160, 553
CspAI ACCGGT 1 cut(s) 349
CviAII CATG 5 cut(s) 110, 200, 312, 363, 594
CviJI RGCY 6 cut(s) 107, 185, 244, 274, 310, 603
CviKI_1 RGCY 6 cut(s) 107, 185, 244, 274, 310, 603
CviQI GTAC 2 cut(s) 160, 553
DdeI CTNAG 4 cut(s) 228, 302, 399, 585
DpnI GATC 3 cut(s) 12, 493, 583
DpnII GATC 3 cut(s) 10, 491, 581
DraIII CACNNNGTG 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 246
Eco32I GATATC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 69
Eco81I CCTNAGG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 33
EcoRV GATATC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 5 cut(s) 113, 203, 315, 366, 597
FatI CATG 5 cut(s) 109, 199, 311, 362, 593
Fnu4HI GCNGC 5 cut(s) 308, 564, 598, 601, 604
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 5 cut(s) 308, 564, 598, 601, 604
GlaI GCGC 1 cut(s) 567
GluI GCNGC 5 cut(s) 308, 564, 598, 601, 604
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 2 cut(s) 107, 274
HapII CCGG 1 cut(s) 350
HhaI GCGC 1 cut(s) 568
Hin1II CATG 5 cut(s) 113, 203, 315, 366, 597
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HinfI GANTC 4 cut(s) 44, 278, 497, 575
HpaII CCGG 1 cut(s) 350
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 197, 555
Hpy188I TCNGA 6 cut(s) 49, 66, 235, 283, 496, 586
Hpy188III TCNNGA 3 cut(s) 14, 144, 579
Hpy8I GTNNAC 2 cut(s) 197, 555
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 3 cut(s) 159, 430, 448
HpyCH4V TGCA 7 cut(s) 91, 126, 203, 407, 425, 593, 600
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 404, 474, 603
HpyF3I CTNAG 4 cut(s) 228, 302, 399, 585
Hsp92II CATG 5 cut(s) 113, 203, 315, 366, 597
HspAI GCGC 1 cut(s) 566
Kzo9I GATC 3 cut(s) 10, 491, 581
Lsp1109I GCAGC 4 cut(s) 319, 550, 584, 590
LweI GCATC 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 503
MalI GATC 3 cut(s) 12, 493, 583
MboI GATC 3 cut(s) 10, 491, 581
MboII GAAGA 3 cut(s) 112, 156, 308
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 1 cut(s) 320
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 2 cut(s) 247, 334
MnlI CCTC 6 cut(s) 182, 263, 286, 311, 515, 527
Mph1103I ATGCAT 1 cut(s) 595
MseI TTAA 2 cut(s) 60, 610
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 603
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 35
Mva1269I GAATGC 2 cut(s) 409, 427
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 4 cut(s) 209, 404, 474, 603
NdeII GATC 3 cut(s) 10, 491, 581
NlaIII CATG 5 cut(s) 113, 203, 315, 366, 597
NlaIV GGNNCC 1 cut(s) 211
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 3 cut(s) 203, 366, 597
PaeI GCATGC 2 cut(s) 366, 597
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 2 cut(s) 409, 427
PfeI GAWTC 3 cut(s) 44, 278, 575
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 5 cut(s) 309, 565, 599, 602, 605
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 2 cut(s) 106, 272
PstI CTGCAG 1 cut(s) 602
PsuI RGATCY 1 cut(s) 581
PvuII CAGCTG 1 cut(s) 603
RsaI GTAC 2 cut(s) 161, 554
RsaNI GTAC 2 cut(s) 160, 553
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 60, 610
SatI GCNGC 5 cut(s) 308, 564, 598, 601, 604
Sau3AI GATC 3 cut(s) 10, 491, 581
Sau96I GGNCC 2 cut(s) 106, 272
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 246
SetI ASST 5 cut(s) 122, 193, 226, 303, 605
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 598
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
SphI GCATGC 2 cut(s) 366, 597
Sse9I AATT 1 cut(s) 320
SsiI CCGC 2 cut(s) 366, 606
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 3 cut(s) 159, 430, 448
TasI AATT 1 cut(s) 320
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 3 cut(s) 44, 278, 575
Tru1I TTAA 2 cut(s) 60, 610
Tru9I TTAA 2 cut(s) 60, 610
TscAI CASTG 2 cut(s) 491, 515
TseI GCWGC 5 cut(s) 307, 563, 597, 600, 603
TspDTI ATGAA 2 cut(s) 83, 425
TspRI CASTG 2 cut(s) 491, 515
XceI RCATGY 3 cut(s) 203, 366, 597
XcmI CCANNNNNNNNNTGG 1 cut(s) 515
ZrmI AGTACT 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.