RLG00000014588

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004565
Physical Location & Seq
Reverse (-)
55115562 .. 55120412
4851 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014588

Sequence Viewer

Length: 1350 bp
ATGGCCCAACAGAGCAACGGCGGCAGCGGCGATCTGAGCACGACTCAACAGGCCCAGCCCAACCAGCAGCAGCAGCAGCAGCAACAGCACCAGCAGCAGCAACAGTGGATGCATCAGCACCAGCAGCAATGGATGGCGATGCAGTACCCGGCGGCGGCCATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTACTTACGCCGCGCATCCGCATCACAACCCCTACCAGCAGGCTCAGGCCGCCGCCGCCGCCGCCGTGGCCTATCAGCAGCAGCAGCCGCCGCTCAAGCAGCAGCAGCAGTCTCAGTCGCAGCAGAAGATGGGGCCTACTGATGAGGTCAGGACCATCTGGGCTGGCGACCTGCACCATTGGATGGACGAGGCCTACCTTCATGGCTGCTTCGCCTACACCGGCCAGGTTTCTTCAGTAAAGGTTATACGCAATAAGCAAACAGGTCAGACAGAAGGGTATGGTTTTGTTGAGTTCTATTCACGTGAAGCAGCTGAGGAAGTTCTGCAGACCTATAATGGTACTCCTATGCCAAATACAGAGCAGCCTTTTCGTCTGAACTGGGCAACCTTTAGTGCGGGTGACAGACGAGCAGATACTAGTTCTGATCTATCTATATTTGTAGGAGATTTAGCTACAGATGTGACTGACACTATGTTGCAAGAAACCTTTGCTTGTAGATATACATCTGTTAAGGGGGCAAAAGTTGTTCAAGATGCAAATACTGGTCGTTCAAAGGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGGACAAAGGCCATTGTGGAAATGAATGGTGCGTATTGTTCGAGCAGGCCCATGCGTATAGGTGTTGCAACGCCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGGTGGTGGACATGCAAATGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAATGAGGAAGACCTCAGGCAGCCGTTTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCAGTTGGAAAAGCATGCGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGTTATGGTGGGTACGCAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGATTAACGGGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

450

Amino Acids

49.47

Weight (kDa)

6.35

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 125 - 189 3.2e-11 RNA recognition motif
RRM_1 PF00076 215 - 285 2.8e-15 RNA recognition motif
RRM_1 PF00076 329 - 392 1.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 935
AccB7I CCANNNNNTGG 1 cut(s) 391
AccBSI CCGCTC 1 cut(s) 301
AccII CGCG 1 cut(s) 221
AcoI YGGCCR 2 cut(s) 156, 430
AcuI CTGAAG 1 cut(s) 426
AcvI CACGTG 1 cut(s) 512
AdeI CACNNNGTG 1 cut(s) 917
AfaI GTAC 5 cut(s) 146, 191, 550, 905, 1280
AfiI CCNNNNNNNGG 2 cut(s) 154, 391
AgsI TTSAA 2 cut(s) 740, 762
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 3 cut(s) 521, 662, 1328
AluI AGCT 3 cut(s) 521, 662, 1328
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 324, 1066
ArsI GACNNNNNNTTYG 2 cut(s) 1162, 1194
AspLEI GCGC 2 cut(s) 223, 1294
AspS9I GGNCC 5 cut(s) 4, 52, 341, 360, 849
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 620, 1064
AvaII GGWCC 1 cut(s) 360
AxyI CCTNAGG 1 cut(s) 1028
BanI GGYRCC 1 cut(s) 935
BanII GRGCYC 1 cut(s) 972
BbrPI CACGTG 1 cut(s) 512
BbsI GAAGAC 2 cut(s) 1029, 1335
Bbv12I GWGCWC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 522
BccI CCATC 6 cut(s) 127, 178, 331, 371, 385, 956
BceAI ACGGC 3 cut(s) 34, 257, 1021
BcgI CGANNNNNNTGC 4 cut(s) 560, 594, 1157, 1191
BciT130I CCWGG 1 cut(s) 434
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 324, 1066
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 3 cut(s) 533, 663, 1323
BfuAI ACCTGC 1 cut(s) 387
BglI GCCNNNNNGGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 1306
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 2 cut(s) 149, 434
Bme18I GGWCC 1 cut(s) 360
BmgT120I GGNCC 5 cut(s) 4, 52, 341, 360, 849
BmiI GGNNCC 2 cut(s) 342, 937
BmrFI CCNGG 2 cut(s) 149, 434
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 8 cut(s) 99, 121, 129, 159, 232, 238, 733, 1111
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 2 cut(s) 1029, 1335
BplI GAGNNNNNCTC 2 cut(s) 28, 60
Bpu10I CCTNAGC 2 cut(s) 252, 522
BpuEI CTTGAG 2 cut(s) 287, 1210
BpuMI CCSGG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 712
BsaJI CCNNGG 3 cut(s) 159, 273, 946
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 391
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 4 cut(s) 593, 757, 1076, 1234
Bse21I CCTNAGG 1 cut(s) 1028
Bse3DI GCAATG 3 cut(s) 134, 939, 1140
Bse8I GATNNNNATC 1 cut(s) 712
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 3 cut(s) 159, 273, 946
BseGI GGATG 6 cut(s) 114, 138, 223, 396, 796, 1126
BseJI GATNNNNATC 1 cut(s) 712
BseLI CCNNNNNNNGG 2 cut(s) 154, 391
BseMI GCAATG 3 cut(s) 134, 939, 1140
BseMII CTCAG 8 cut(s) 26, 266, 335, 513, 968, 1042, 1116, 1301
BseNI ACTGG 4 cut(s) 593, 757, 1076, 1234
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 2 cut(s) 149, 429
BslI CCNNNNNNNGG 2 cut(s) 154, 391
BsmAI GTCTC 2 cut(s) 324, 1066
BsmI GAATGC 2 cut(s) 1135, 1153
Bsp1286I GDGCHC 2 cut(s) 41, 972
Bsp143I GATC 4 cut(s) 31, 634, 1217, 1306
Bsp19I CCATGG 1 cut(s) 159
BspCNI CTCAG 8 cut(s) 27, 265, 334, 514, 967, 1041, 1117, 1302
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 342, 937
BspMAI CTGCAG 2 cut(s) 537, 1327
BspMI ACCTGC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 935
BsrBI CCGCTC 1 cut(s) 301
BsrDI GCAATG 3 cut(s) 134, 939, 1140
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 4 cut(s) 593, 757, 1076, 1234
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 159, 273, 946
BssMI GATC 4 cut(s) 31, 634, 1217, 1306
BssT1I CCWWGG 2 cut(s) 159, 946
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 4 cut(s) 105, 903, 1156, 1174
Bst6I CTCTTC 1 cut(s) 913
BstAPI GCANNNNNTGC 3 cut(s) 205, 935, 1289
BstBAI YACGTR 1 cut(s) 512
BstC8I GCNNGC 6 cut(s) 249, 373, 848, 968, 1090, 1320
BstDEI CTNAG 8 cut(s) 35, 252, 321, 522, 954, 1028, 1125, 1310
BstDSI CCRYGG 2 cut(s) 159, 273
BstF5I GGATG 6 cut(s) 114, 138, 223, 396, 796, 1126
BstFNI CGCG 1 cut(s) 221
BstHHI GCGC 2 cut(s) 223, 1294
BstKTI GATC 4 cut(s) 34, 637, 1220, 1309
BstMAI GTCTC 2 cut(s) 324, 1066
BstMBI GATC 4 cut(s) 31, 634, 1217, 1306
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 4 cut(s) 208, 929, 1092, 1322
BstSCI CCNGG 2 cut(s) 147, 432
BstSFI CTRYAG 3 cut(s) 533, 663, 1323
BstUI CGCG 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 1029, 1335
BstX2I RGATCY 1 cut(s) 1306
BstYI RGATCY 1 cut(s) 1306
Bsu36I CCTNAGG 1 cut(s) 1028
BtgI CCRYGG 2 cut(s) 159, 273
BtgZI GCGATG 2 cut(s) 152, 179
BtsCI GGATG 6 cut(s) 114, 138, 223, 396, 796, 1126
BtsI GCAGTG 1 cut(s) 1217
BtsIMutI CAGTG 3 cut(s) 110, 1217, 1241
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 6 cut(s) 249, 373, 848, 968, 1090, 1320
CfoI GCGC 2 cut(s) 223, 1294
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 5 cut(s) 4, 52, 341, 360, 849
Csp6I GTAC 5 cut(s) 145, 190, 549, 904, 1279
CviAII CATG 7 cut(s) 160, 205, 410, 853, 926, 1089, 1319
CviQI GTAC 5 cut(s) 145, 190, 549, 904, 1279
DdeI CTNAG 8 cut(s) 35, 252, 321, 522, 954, 1028, 1125, 1310
DpnI GATC 4 cut(s) 33, 636, 1219, 1308
DpnII GATC 4 cut(s) 31, 634, 1217, 1306
DraIII CACNNNGTG 1 cut(s) 917
EaeI YGGCCR 2 cut(s) 156, 430
Eam1104I CTCTTC 1 cut(s) 913
EarI CTCTTC 1 cut(s) 913
Eco130I CCWWGG 2 cut(s) 159, 946
Eco147I AGGCCT 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 972
Eco32I GATATC 1 cut(s) 893
Eco47I GGWCC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 426
Eco72I CACGTG 1 cut(s) 512
Eco81I CCTNAGG 1 cut(s) 1028
EcoO109I RGGNCCY 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 432
EcoRV GATATC 1 cut(s) 893
EcoT14I CCWWGG 2 cut(s) 159, 946
EcoT22I ATGCAT 2 cut(s) 114, 1320
EcoT38I GRGCYC 1 cut(s) 972
ErhI CCWWGG 2 cut(s) 159, 946
FaeI CATG 7 cut(s) 163, 208, 413, 856, 929, 1092, 1322
FatI CATG 7 cut(s) 159, 204, 409, 852, 925, 1088, 1318
FauI CCCGC 2 cut(s) 201, 598
FokI GGATG 6 cut(s) 121, 145, 210, 403, 803, 1133
FriOI GRGCYC 1 cut(s) 972
FspBI CTAG 1 cut(s) 627
GlaI GCGC 2 cut(s) 222, 1293
GsaI CCCAGC 1 cut(s) 58
HapII CCGG 2 cut(s) 149, 429
HhaI GCGC 2 cut(s) 223, 1294
Hin1II CATG 7 cut(s) 163, 208, 413, 856, 929, 1092, 1322
Hin6I GCGC 2 cut(s) 221, 1292
HinP1I GCGC 2 cut(s) 221, 1292
HinfI GANTC 4 cut(s) 43, 1004, 1223, 1300
HpaII CCGG 2 cut(s) 149, 429
HphI GGTGA 2 cut(s) 620, 1064
Hpy166II GTNNAC 2 cut(s) 190, 923
Hpy188I TCNGA 8 cut(s) 36, 477, 585, 634, 961, 1009, 1222, 1311
Hpy188III TCNNGA 4 cut(s) 358, 740, 888, 1304
Hpy8I GTNNAC 2 cut(s) 190, 923
HpyAV CCTTC 3 cut(s) 416, 476, 1111
HpyCH4III ACNGT 4 cut(s) 105, 903, 1156, 1174
HpyCH4IV ACGT 1 cut(s) 511
HpyF3I CTNAG 8 cut(s) 35, 252, 321, 522, 954, 1028, 1125, 1310
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 7 cut(s) 163, 208, 413, 856, 929, 1092, 1322
HspAI GCGC 2 cut(s) 221, 1292
Kzo9I GATC 4 cut(s) 31, 634, 1217, 1306
LweI GCATC 8 cut(s) 99, 121, 129, 159, 232, 238, 733, 1111
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 3 cut(s) 608, 670, 1229
MalI GATC 4 cut(s) 33, 636, 1219, 1308
MbiI CCGCTC 1 cut(s) 301
MboI GATC 4 cut(s) 31, 634, 1217, 1306
MboII GAAGA 5 cut(s) 346, 432, 900, 1034, 1335
MflI RGATCY 1 cut(s) 1306
MhlI GDGCHC 2 cut(s) 41, 972
MluCI AATT 1 cut(s) 1046
MlyI GAGTC 2 cut(s) 37, 1217
MmeI TCCRAC 2 cut(s) 973, 1060
MnlI CCTC 9 cut(s) 346, 391, 517, 795, 989, 1012, 1037, 1241, 1253
Mph1103I ATGCAT 2 cut(s) 114, 1320
MseI TTAA 3 cut(s) 720, 1335, 1348
MslI CAYNNNNRTG 2 cut(s) 164, 930
MspA1I CMGCKG 3 cut(s) 27, 521, 1328
MspI CCGG 2 cut(s) 149, 429
MspR9I CCNGG 2 cut(s) 149, 434
Mva1269I GAATGC 2 cut(s) 1135, 1153
MvaI CCWGG 1 cut(s) 434
MvnI CGCG 1 cut(s) 221
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 1 cut(s) 159
NdeII GATC 4 cut(s) 31, 634, 1217, 1306
NlaIII CATG 7 cut(s) 163, 208, 413, 856, 929, 1092, 1322
NlaIV GGNNCC 2 cut(s) 342, 937
NmuCI GTSAC 2 cut(s) 608, 670
NsiI ATGCAT 2 cut(s) 114, 1320
NspI RCATGY 4 cut(s) 208, 929, 1092, 1322
PaeI GCATGC 2 cut(s) 1092, 1322
PceI AGGCCT 1 cut(s) 401
PctI GAATGC 2 cut(s) 1135, 1153
PfeI GAWTC 2 cut(s) 1004, 1300
PflMI CCANNNNNTGG 1 cut(s) 391
PleI GAGTC 2 cut(s) 37, 1217
PmaCI CACGTG 1 cut(s) 512
PmlI CACGTG 1 cut(s) 512
PpsI GAGTC 2 cut(s) 37, 1217
Ppu21I YACGTR 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 432
PspCI CACGTG 1 cut(s) 512
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 2 cut(s) 342, 937
PspPI GGNCC 5 cut(s) 4, 52, 341, 360, 849
PstI CTGCAG 2 cut(s) 537, 1327
PsuI RGATCY 1 cut(s) 1306
PvuII CAGCTG 2 cut(s) 521, 1328
RsaI GTAC 5 cut(s) 146, 191, 550, 905, 1280
RsaNI GTAC 5 cut(s) 145, 190, 549, 904, 1279
RseI CAYNNNNRTG 2 cut(s) 164, 930
SaqAI TTAA 3 cut(s) 720, 1335, 1348
Sau3AI GATC 4 cut(s) 31, 634, 1217, 1306
Sau96I GGNCC 5 cut(s) 4, 52, 341, 360, 849
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 2 cut(s) 37, 1217
ScrFI CCNGG 2 cut(s) 149, 434
SduI GDGCHC 2 cut(s) 41, 972
SfaNI GCATC 8 cut(s) 99, 121, 129, 159, 232, 238, 733, 1111
SfcI CTRYAG 3 cut(s) 533, 663, 1323
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 2 cut(s) 164, 930
SmlI CTYRAG 2 cut(s) 302, 1225
SmoI CTYRAG 2 cut(s) 302, 1225
SpeI ACTAGT 1 cut(s) 626
SphI GCATGC 2 cut(s) 1092, 1322
Sse9I AATT 1 cut(s) 1046
SseBI AGGCCT 1 cut(s) 401
SspMI CTAG 1 cut(s) 627
StuI AGGCCT 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 147, 432
StyI CCWWGG 2 cut(s) 159, 946
TaaI ACNGT 4 cut(s) 105, 903, 1156, 1174
TaiI ACGT 1 cut(s) 514
TaqI TCGA 1 cut(s) 842
TasI AATT 1 cut(s) 1046
TatI WGTACW 1 cut(s) 903
TfiI GAWTC 2 cut(s) 1004, 1300
Tru1I TTAA 3 cut(s) 720, 1335, 1348
Tru9I TTAA 3 cut(s) 720, 1335, 1348
TscAI CASTG 3 cut(s) 110, 1217, 1241
TseFI GTSAC 2 cut(s) 608, 670
Tsp45I GTSAC 2 cut(s) 608, 670
TspDTI ATGAA 4 cut(s) 398, 807, 839, 1151
TspRI CASTG 3 cut(s) 110, 1217, 1241
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 360
XceI RCATGY 4 cut(s) 208, 929, 1092, 1322
XcmI CCANNNNNNNNNTGG 1 cut(s) 1241
XspI CTAG 1 cut(s) 627
ZrmI AGTACT 1 cut(s) 905
Zsp2I ATGCAT 2 cut(s) 114, 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.