Rw6G008630

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
14618159 .. 14623360
5202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008630.1

Sequence Viewer

Length: 1362 bp
ATGGCCCAACAGAGCAACGGCGGCAGCGGCGATCTGAGCACGACTCAACAGGCCCAGCCCAACCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGTGGATGCATCAGCACCAGCAGCAATGGATGGCGATGCAGTACCCGGCGGCGGCCATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTACTTACGCCGCGCATCCGCATCACAATCCCTACCAGCAGGCTCAGGCAGCCGCCGCGGTGGCCTATCAGCAGCAGCCGCCGCTCAAGCAGCAGCAGCAGCAGCTGTCTCAGTCGCAGCAGAAGATGGGGCCTACTGATGAGGTCAGGACCATCTGGGCTGGCGACCTGCACCATTGGATGGACGAGGCTTACCTTCATGGCTGCTTCGCCTACACCGGCCAGGTTTCTTCAGTAAAGGTTATACGCAATAAGCAAACAGGTCAGACAGAAGGGTATGGTTTTGTTGAGTTCTATTCACGTGAAGCAGCTGAGGAAGTTCTGCAGACCTATAATGGTACTCCTATGCCAAATACAGAGCAGCCTTTTCGTCTGAACTGGGCAACCTTTAGTGCGGGTGACAGACGAGCAGATACTAGTTCTGATCTATCTATCTTTGTAGGAGATTTAGCTACAGATGTGACTGACACTATGTTGCAAGAAACCTTTGCTAGTAGATATACATCTGTTAAGGGGGCTAAAGTTGTTCAAGATGCAAATACCGGTCGTTCAAAGGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGGACAAAGGCCATTGTGGAAATGAATGGTGCGTATTGTTCGAGCAGGCCTATGCGTATAGGTGTTGCAACGCCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGCATTGGTATTGGCTGGAGGTGGTGGACATGCAAATGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAATGAGGAAGACCTCAGGCAGCCGTTTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCAGTTGGAAAAGCATGCGGTTTTGTTCAGTTCGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACGCAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGATTAATGGGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

453

Amino Acids

49.82

Weight (kDa)

6.31

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 123 - 187 3.3e-11 RNA recognition motif
RRM_1 PF00076 213 - 283 4.9e-16 RNA recognition motif
RRM_1 PF00076 333 - 396 1.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 947
AccB7I CCANNNNNTGG 1 cut(s) 385
AccBSI CCGCTC 1 cut(s) 289
AccII CGCG 2 cut(s) 218, 263
AcoI YGGCCR 2 cut(s) 153, 424
AcuI CTGAAG 1 cut(s) 420
AcvI CACGTG 1 cut(s) 506
AfaI GTAC 5 cut(s) 143, 188, 544, 899, 1292
AfiI CCNNNNNNNGG 2 cut(s) 151, 385
AgeI ACCGGT 1 cut(s) 746
AgsI TTSAA 2 cut(s) 734, 756
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 4 cut(s) 310, 515, 656, 1340
AluI AGCT 4 cut(s) 310, 515, 656, 1340
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 318, 1078
AlwNI CAGNNNCTG 1 cut(s) 310
AoxI GGCC 8 cut(s) 3, 51, 153, 267, 335, 424, 804, 842
ArsI GACNNNNNNTTYG 2 cut(s) 1174, 1206
AseI ATTAAT 1 cut(s) 1347
AsiGI ACCGGT 1 cut(s) 746
AspLEI GCGC 2 cut(s) 220, 1306
AspS9I GGNCC 4 cut(s) 4, 52, 335, 354
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 614, 1076
AvaII GGWCC 1 cut(s) 354
AxyI CCTNAGG 1 cut(s) 1040
BanI GGYRCC 1 cut(s) 947
BanII GRGCYC 1 cut(s) 984
BbrPI CACGTG 1 cut(s) 506
BbsI GAAGAC 2 cut(s) 1041, 1347
Bbv12I GWGCWC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 516
BccI CCATC 6 cut(s) 124, 175, 325, 365, 379, 968
BceAI ACGGC 2 cut(s) 34, 1033
BcgI CGANNNNNNTGC 4 cut(s) 554, 588, 1169, 1203
BciT130I CCWGG 1 cut(s) 428
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 318, 1078
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 2 cut(s) 621, 696
BfmI CTRYAG 3 cut(s) 527, 657, 1335
BfuAI ACCTGC 1 cut(s) 381
BglI GCCNNNNNGGC 1 cut(s) 266
BglII AGATCT 1 cut(s) 1318
BmcAI AGTACT 1 cut(s) 899
Bme1390I CCNGG 2 cut(s) 146, 428
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 4 cut(s) 4, 52, 335, 354
BmiI GGNNCC 2 cut(s) 336, 949
BmrFI CCNGG 2 cut(s) 146, 428
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 8 cut(s) 96, 118, 126, 156, 229, 235, 727, 1123
BmuI ACTGGG 1 cut(s) 592
BpiI GAAGAC 2 cut(s) 1041, 1347
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 2 cut(s) 249, 516
BpuEI CTTGAG 2 cut(s) 275, 1222
BpuMI CCSGG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 706
BsaJI CCNNGG 3 cut(s) 156, 261, 958
BsaWI WCCGGW 1 cut(s) 746
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 385
Bse118I RCCGGY 2 cut(s) 422, 746
Bse1I ACTGG 3 cut(s) 587, 1088, 1246
Bse21I CCTNAGG 1 cut(s) 1040
Bse3DI GCAATG 3 cut(s) 131, 951, 1152
Bse8I GATNNNNATC 1 cut(s) 706
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 3 cut(s) 156, 261, 958
BseGI GGATG 6 cut(s) 111, 135, 220, 390, 790, 1138
BseJI GATNNNNATC 1 cut(s) 706
BseLI CCNNNNNNNGG 2 cut(s) 151, 385
BseMI GCAATG 3 cut(s) 131, 951, 1152
BseMII CTCAG 8 cut(s) 26, 263, 329, 507, 980, 1054, 1128, 1313
BseNI ACTGG 3 cut(s) 587, 1088, 1246
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 2 cut(s) 218, 263
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 8 cut(s) 5, 53, 155, 269, 337, 426, 806, 844
BshNI GGYRCC 1 cut(s) 947
BshTI ACCGGT 1 cut(s) 746
BsiEI CGRYCG 1 cut(s) 751
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 3 cut(s) 146, 423, 747
BslI CCNNNNNNNGG 2 cut(s) 151, 385
BsmAI GTCTC 2 cut(s) 318, 1078
BsmI GAATGC 2 cut(s) 1147, 1165
BsnI GGCC 8 cut(s) 5, 53, 155, 269, 337, 426, 806, 844
Bsp1286I GDGCHC 2 cut(s) 41, 984
Bsp143I GATC 4 cut(s) 31, 628, 1229, 1318
Bsp19I CCATGG 1 cut(s) 156
BspANI GGCC 8 cut(s) 5, 53, 155, 269, 337, 426, 806, 844
BspCNI CTCAG 8 cut(s) 27, 262, 328, 508, 979, 1053, 1129, 1314
BspFNI CGCG 2 cut(s) 218, 263
BspLI GGNNCC 2 cut(s) 336, 949
BspMAI CTGCAG 2 cut(s) 531, 1339
BspMI ACCTGC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 947
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 3 cut(s) 131, 951, 1152
BsrFI RCCGGY 2 cut(s) 422, 746
BsrI ACTGG 3 cut(s) 587, 1088, 1246
BssAI RCCGGY 2 cut(s) 422, 746
BssECI CCNNGG 3 cut(s) 156, 261, 958
BssMI GATC 4 cut(s) 31, 628, 1229, 1318
BssT1I CCWWGG 2 cut(s) 156, 958
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 897, 1168, 1186
Bst6I CTCTTC 1 cut(s) 907
BstAPI GCANNNNNTGC 4 cut(s) 106, 202, 947, 1301
BstBAI YACGTR 1 cut(s) 506
BstC8I GCNNGC 6 cut(s) 246, 367, 842, 980, 1102, 1332
BstDEI CTNAG 8 cut(s) 35, 249, 315, 516, 966, 1040, 1137, 1322
BstDSI CCRYGG 2 cut(s) 156, 261
BstF5I GGATG 6 cut(s) 111, 135, 220, 390, 790, 1138
BstFNI CGCG 2 cut(s) 218, 263
BstHHI GCGC 2 cut(s) 220, 1306
BstKTI GATC 4 cut(s) 34, 631, 1232, 1321
BstMAI GTCTC 2 cut(s) 318, 1078
BstMBI GATC 4 cut(s) 31, 628, 1229, 1318
BstMCI CGRYCG 1 cut(s) 751
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 4 cut(s) 205, 941, 1104, 1334
BstSCI CCNGG 2 cut(s) 144, 426
BstSFI CTRYAG 3 cut(s) 527, 657, 1335
BstUI CGCG 2 cut(s) 218, 263
BstV2I GAAGAC 2 cut(s) 1041, 1347
BstX2I RGATCY 1 cut(s) 1318
BstYI RGATCY 1 cut(s) 1318
Bsu36I CCTNAGG 1 cut(s) 1040
BsuRI GGCC 8 cut(s) 5, 53, 155, 269, 337, 426, 806, 844
BtgI CCRYGG 2 cut(s) 156, 261
BtgZI GCGATG 2 cut(s) 149, 176
BtsCI GGATG 6 cut(s) 111, 135, 220, 390, 790, 1138
BtsI GCAGTG 2 cut(s) 107, 1229
BtsIMutI CAGTG 3 cut(s) 107, 1229, 1253
BveI ACCTGC 1 cut(s) 381
Cac8I GCNNGC 6 cut(s) 246, 367, 842, 980, 1102, 1332
CaiI CAGNNNCTG 1 cut(s) 310
CfoI GCGC 2 cut(s) 220, 1306
Cfr10I RCCGGY 2 cut(s) 422, 746
Cfr13I GGNCC 4 cut(s) 4, 52, 335, 354
Cfr42I CCGCGG 1 cut(s) 264
Csp6I GTAC 5 cut(s) 142, 187, 543, 898, 1291
CspAI ACCGGT 1 cut(s) 746
CviAII CATG 6 cut(s) 157, 202, 404, 938, 1101, 1331
CviQI GTAC 5 cut(s) 142, 187, 543, 898, 1291
DdeI CTNAG 8 cut(s) 35, 249, 315, 516, 966, 1040, 1137, 1322
DpnI GATC 4 cut(s) 33, 630, 1231, 1320
DpnII GATC 4 cut(s) 31, 628, 1229, 1318
EaeI YGGCCR 2 cut(s) 153, 424
Eam1104I CTCTTC 1 cut(s) 907
EarI CTCTTC 1 cut(s) 907
Eco130I CCWWGG 2 cut(s) 156, 958
Eco147I AGGCCT 1 cut(s) 844
Eco24I GRGCYC 1 cut(s) 984
Eco32I GATATC 1 cut(s) 887
Eco47I GGWCC 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 420
Eco72I CACGTG 1 cut(s) 506
Eco81I CCTNAGG 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 426
EcoRV GATATC 1 cut(s) 887
EcoT14I CCWWGG 2 cut(s) 156, 958
EcoT22I ATGCAT 2 cut(s) 111, 1332
EcoT38I GRGCYC 1 cut(s) 984
ErhI CCWWGG 2 cut(s) 156, 958
FaeI CATG 6 cut(s) 160, 205, 407, 941, 1104, 1334
FatI CATG 6 cut(s) 156, 201, 403, 937, 1100, 1330
FauI CCCGC 2 cut(s) 198, 592
FokI GGATG 6 cut(s) 118, 142, 207, 397, 797, 1145
FriOI GRGCYC 1 cut(s) 984
FspBI CTAG 2 cut(s) 621, 696
GlaI GCGC 2 cut(s) 219, 1305
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 8 cut(s) 5, 53, 155, 269, 337, 426, 806, 844
HapII CCGG 3 cut(s) 146, 423, 747
HhaI GCGC 2 cut(s) 220, 1306
Hin1II CATG 6 cut(s) 160, 205, 407, 941, 1104, 1334
Hin6I GCGC 2 cut(s) 218, 1304
HinP1I GCGC 2 cut(s) 218, 1304
HinfI GANTC 4 cut(s) 43, 1016, 1235, 1312
HpaII CCGG 3 cut(s) 146, 423, 747
HphI GGTGA 2 cut(s) 614, 1076
Hpy166II GTNNAC 2 cut(s) 187, 935
Hpy188I TCNGA 8 cut(s) 36, 471, 579, 628, 973, 1021, 1234, 1323
Hpy188III TCNNGA 4 cut(s) 352, 734, 882, 1316
Hpy8I GTNNAC 2 cut(s) 187, 935
HpyAV CCTTC 3 cut(s) 410, 470, 1123
HpyCH4III ACNGT 3 cut(s) 897, 1168, 1186
HpyCH4IV ACGT 1 cut(s) 505
HpyF3I CTNAG 8 cut(s) 35, 249, 315, 516, 966, 1040, 1137, 1322
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 6 cut(s) 160, 205, 407, 941, 1104, 1334
HspAI GCGC 2 cut(s) 218, 1304
KspI CCGCGG 1 cut(s) 264
Kzo9I GATC 4 cut(s) 31, 628, 1229, 1318
LweI GCATC 8 cut(s) 96, 118, 126, 156, 229, 235, 727, 1123
MaeI CTAG 2 cut(s) 621, 696
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 602, 664, 1241
MalI GATC 4 cut(s) 33, 630, 1231, 1320
MbiI CCGCTC 1 cut(s) 289
MboI GATC 4 cut(s) 31, 628, 1229, 1318
MboII GAAGA 5 cut(s) 340, 426, 894, 1046, 1347
MflI RGATCY 1 cut(s) 1318
MhlI GDGCHC 2 cut(s) 41, 984
MluCI AATT 1 cut(s) 1058
MlyI GAGTC 2 cut(s) 37, 1229
MmeI TCCRAC 2 cut(s) 985, 1072
Mph1103I ATGCAT 2 cut(s) 111, 1332
MseI TTAA 3 cut(s) 714, 1347, 1360
MslI CAYNNNNRTG 2 cut(s) 161, 942
MspA1I CMGCKG 5 cut(s) 27, 263, 310, 515, 1340
MspI CCGG 3 cut(s) 146, 423, 747
MspR9I CCNGG 2 cut(s) 146, 428
Mva1269I GAATGC 2 cut(s) 1147, 1165
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 2 cut(s) 218, 263
NciI CCSGG 1 cut(s) 146
NcoI CCATGG 1 cut(s) 156
NdeII GATC 4 cut(s) 31, 628, 1229, 1318
NlaIII CATG 6 cut(s) 160, 205, 407, 941, 1104, 1334
NlaIV GGNNCC 2 cut(s) 336, 949
NmuCI GTSAC 2 cut(s) 602, 664
NsiI ATGCAT 2 cut(s) 111, 1332
NspI RCATGY 4 cut(s) 205, 941, 1104, 1334
PaeI GCATGC 2 cut(s) 1104, 1334
PceI AGGCCT 1 cut(s) 844
PctI GAATGC 2 cut(s) 1147, 1165
PfeI GAWTC 2 cut(s) 1016, 1312
PflMI CCANNNNNTGG 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 746
PleI GAGTC 2 cut(s) 37, 1229
PmaCI CACGTG 1 cut(s) 506
PmlI CACGTG 1 cut(s) 506
PpsI GAGTC 2 cut(s) 37, 1229
Ppu21I YACGTR 1 cut(s) 506
PshBI ATTAAT 1 cut(s) 1347
Psp6I CCWGG 1 cut(s) 426
PspCI CACGTG 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 336, 949
PspPI GGNCC 4 cut(s) 4, 52, 335, 354
PstI CTGCAG 2 cut(s) 531, 1339
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 1318
PvuII CAGCTG 3 cut(s) 310, 515, 1340
RsaI GTAC 5 cut(s) 143, 188, 544, 899, 1292
RsaNI GTAC 5 cut(s) 142, 187, 543, 898, 1291
RseI CAYNNNNRTG 2 cut(s) 161, 942
SacII CCGCGG 1 cut(s) 264
SaqAI TTAA 3 cut(s) 714, 1347, 1360
Sau3AI GATC 4 cut(s) 31, 628, 1229, 1318
Sau96I GGNCC 4 cut(s) 4, 52, 335, 354
ScaI AGTACT 1 cut(s) 899
SchI GAGTC 2 cut(s) 37, 1229
ScrFI CCNGG 2 cut(s) 146, 428
SduI GDGCHC 2 cut(s) 41, 984
SfaNI GCATC 8 cut(s) 96, 118, 126, 156, 229, 235, 727, 1123
SfcI CTRYAG 3 cut(s) 527, 657, 1335
Sfr303I CCGCGG 1 cut(s) 264
SgrBI CCGCGG 1 cut(s) 264
SinI GGWCC 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 161, 942
SmlI CTYRAG 2 cut(s) 290, 1237
SmoI CTYRAG 2 cut(s) 290, 1237
SpeI ACTAGT 1 cut(s) 620
SphI GCATGC 2 cut(s) 1104, 1334
Sse9I AATT 1 cut(s) 1058
SseBI AGGCCT 1 cut(s) 844
SspMI CTAG 2 cut(s) 621, 696
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 2 cut(s) 144, 426
StyI CCWWGG 2 cut(s) 156, 958
TaaI ACNGT 3 cut(s) 897, 1168, 1186
TaiI ACGT 1 cut(s) 508
TaqI TCGA 1 cut(s) 836
TasI AATT 1 cut(s) 1058
TatI WGTACW 1 cut(s) 897
TauI GCSGC 9 cut(s) 24, 30, 152, 155, 218, 260, 263, 286, 289
TfiI GAWTC 2 cut(s) 1016, 1312
Tru1I TTAA 3 cut(s) 714, 1347, 1360
Tru9I TTAA 3 cut(s) 714, 1347, 1360
TscAI CASTG 3 cut(s) 107, 1229, 1253
TseFI GTSAC 2 cut(s) 602, 664
Tsp45I GTSAC 2 cut(s) 602, 664
TspDTI ATGAA 4 cut(s) 392, 801, 833, 1163
TspRI CASTG 3 cut(s) 107, 1229, 1253
Van91I CCANNNNNTGG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 354
VspI ATTAAT 1 cut(s) 1347
XceI RCATGY 4 cut(s) 205, 941, 1104, 1334
XcmI CCANNNNNNNNNTGG 1 cut(s) 1253
XspI CTAG 2 cut(s) 621, 696
ZrmI AGTACT 1 cut(s) 899
Zsp2I ATGCAT 2 cut(s) 111, 1332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.