Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004565

Physical Location & Seq

Genomic Coordinates Reverse (-)

13600025 .. 13605120

Gene Structure 5096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1090700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGAGAAGCAATAATCCCTTTAAAACCCCATTCGTCACTTCAAACCCTCCCTCTTTTGCTTCCGCGCCGCCCTCGCCTCCCTCTCTCTCTAGCTTCAAGCCTCCCTCTCTGCTCTCTCTCCTCAGATCTCACAGAACACACAGAACCAAGAATTCTAGAGAGAGAGGTGCAGAGAGAAGAGAAGATCACAAGCTCGGAACTTCATACATGGCCCAGCAATCCAACGGCGGCAGCGATCTGGGCACTCCGCAGCACCAGCAGCAACAACAGCAGCACCACCAGCAGCAATGGATGCACCAGCAGCAATGGATGGCCATGCAGTACCCGGCGGCGGCGATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTTACGGGGCGGCTCCTCATCATCCTCACCCCAATCCGTACCAGCAGCAGCCTCAGGCTGTGGCGTATCAGCAGCAACAGCAGCCGCCGAAGCAGCTGCAGCAGCAGCAGTCGCCGTCACAAAAACAGGGGCCCAACGACGAGGTCAGGACCATCTGGGTTGGCGACCTTCATCATTGGATGGACGAGACTTACCTTCACGGATGCTTTGCGCACACTGGACAGGTTTCCTCAATTAAGGTAATACGCAATAAGCAAACTGGTCAGTCAGAGGGATATGGATTCGTTGAGTTCTATTCACGGGAAGCAGCTGAGGAAGTTTTGCAGAACTATAACGGAACTGCAATGCCAAATACAGAGCAGCCTTTTCGTTTAAACTGGGCAACCTTCAGTGCTGGTGATAGACGAGCAGACACTAGTGCTGATCTATCTATCTTTGTAGGAGATTTGGCTACAGATGTCACTGACACTATGTTGCAGGAGACTTTTTCTAGTAGATATTCATCTGTTAAGGGAGCGAAAGTTGTTCTAGATGCAAATACTGGACGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGTCAAGGGCTATTGCCGAAATGAATGGTGCGTATTGTTCGAGCAGGGCCATGCGCATCGGTGTTGCAACACCCAAAAAAGCACCTGCATATCAACAACAGTATTCTTCACAAGCATTGGTATTGGCTGGTGGTGGACATGCATCAAATGGTGCCGTCGCCCAAGGTTCCCAGTTTGACAGTGAGCCTAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGAGGTCAATGATGAAGACCTCCGGCTGCCTTTTTCTCATTTTGGTGAAGTTGTCTCTGTGAAAATACCAGTTGGAAAAGCGTGTGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAACGCAATACAGATGCTGAATGGAACGGTTATTGGCAAGCAAACAGTTCGACTTTCTTGGGGTCGCAGTCAGGGGAACAAGCAGTGGAGGTCGGATTCAAGTAACCAGTGGAATGGAGCACACTATGGAGGACAGGGTTATGGCGGGTATGGACATGCTGTGCCACAGGGTGAGGACCTGAGCATGCACACCGCAGCTGCGGTTAACGGGGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

513

Amino Acids

56.59

Weight (kDa)

8.55

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	180 - 247	8.8e-14	RNA recognition motif
RRM_1	PF00076	273 - 343	2.8e-16	RNA recognition motif
RRM_1	PF00076	393 - 456	2.3e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49600 AT1G49600 AT1G49600 AT3G19130
fragaria_vesca	FvH4_2g06660 FvH4_2g06660 FvH4_2g06660
malus_domestica	MD05G1076000.v1.1 MD10G1090700.v1.1
prunus_persica	Prupe.8G119500_v2.0.a1 Prupe.8G119500_v2.0.a1
pyrus_communis	pycom05g06950 pycom10g07420
rosa_chinensis	RchiOBHm_Chr4g0407821 RchiOBHm_Chr6g0258701
rosa_laevigata	RLG00000014588
rosa_multiflora	Rmu_ssc0000014.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352380 Rroxscaffold_7G00206030
rosa_rugosa	Rorug04G0081300 Rorug05G0582900 Rorug05G0583000 Rorug05G0583100
rosa_samantha	Rh4AG146600 Rh4BG144100 Rh4CG153100 Rh4DG140600 Rh6BG091100 Rh6DG082700
rosa_wichuraiana	Rw0G022700 Rw6G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1069
Acc16I	TGCGCA	2 cut(s)	597, 1031
Acc36I	ACCTGC	1 cut(s)	1069
AccB1I	GGYRCC	1 cut(s)	1127
AccII	CGCG	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	757
AdeI	CACNNNGTG	1 cut(s)	1490
AfaI	GTAC	3 cut(s)	323, 368, 425
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	42, 97, 936, 1419
AhlI	ACTAGT	1 cut(s)	800
AluBI	AGCT	5 cut(s)	93, 193, 481, 695, 1517
AluI	AGCT	5 cut(s)	93, 193, 481, 695, 1517
Alw21I	GWGCWC	1 cut(s)	1441
Alw26I	GTCTC	3 cut(s)	566, 860, 1258
AlwNI	CAGNNNCTG	1 cut(s)	1336
AoxI	GGCC	4 cut(s)	210, 312, 515, 1023
ApaI	GGGCCC	1 cut(s)	519
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	3 cut(s)	67, 598, 1032
AspS9I	GGNCC	6 cut(s)	211, 515, 516, 534, 1023, 1495
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	5 cut(s)	404, 794, 974, 1256, 1502
AvaII	GGWCC	2 cut(s)	534, 1495
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	2 cut(s)	245, 519
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	1127
BanII	GRGCYC	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	1221
Bbv12I	GWGCWC	1 cut(s)	1441
BbvCI	CCTCAGC	1 cut(s)	696
BccI	CCATC	5 cut(s)	304, 331, 355, 545, 559
BceAI	ACGGC	3 cut(s)	241, 484, 1115
BcgI	CGANNNNNNTGC	6 cut(s)	463, 497, 734, 768, 1349, 1383
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	3 cut(s)	566, 860, 1258
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	5 cut(s)	90, 156, 801, 876, 914
BfmI	CTRYAG	2 cut(s)	482, 837
BfuAI	ACCTGC	1 cut(s)	1069
BglII	AGATCT	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	2 cut(s)	534, 1495
BmgT120I	GGNCC	6 cut(s)	211, 515, 516, 534, 1023, 1495
BmiI	GGNNCC	5 cut(s)	399, 516, 517, 1129, 1144
BmrFI	CCNGG	1 cut(s)	326
BmrI	ACTGGG	2 cut(s)	772, 1141
BmsI	GCATC	8 cut(s)	282, 336, 578, 907, 1041, 1127, 1303, 1323
BmuI	ACTGGG	2 cut(s)	772, 1141
BpiI	GAAGAC	1 cut(s)	1221
Bpu10I	CCTNAGC	2 cut(s)	696, 1499
BpuMI	CCSGG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	886
BsaJI	CCNNGG	1 cut(s)	1138
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	7 cut(s)	607, 649, 767, 931, 1147, 1268, 1426
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	3 cut(s)	293, 311, 735
Bse8I	GATNNNNATC	1 cut(s)	886
BseDI	CCNNGG	1 cut(s)	1138
BseGI	GGATG	6 cut(s)	297, 315, 406, 570, 593, 1318
BseJI	GATNNNNATC	1 cut(s)	886
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	3 cut(s)	293, 311, 735
BseMII	CTCAG	6 cut(s)	136, 452, 687, 1191, 1308, 1490
BseNI	ACTGG	7 cut(s)	607, 649, 767, 931, 1147, 1268, 1426
BseRI	GAGGAG	2 cut(s)	110, 390
BseSI	GKGCMC	2 cut(s)	245, 519
BseYI	CCCAGC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	4 cut(s)	212, 314, 517, 1025
BshNI	GGYRCC	1 cut(s)	1127
BsiHKAI	GWGCWC	1 cut(s)	1441
BsiSI	CCGG	2 cut(s)	326, 1222
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	3 cut(s)	566, 860, 1258
BsnI	GGCC	4 cut(s)	212, 314, 517, 1025
Bsp120I	GGGCCC	1 cut(s)	515
Bsp1286I	GDGCHC	3 cut(s)	245, 519, 1441
Bsp143I	GATC	4 cut(s)	125, 184, 235, 808
BspANI	GGCC	4 cut(s)	212, 314, 517, 1025
BspCNI	CTCAG	6 cut(s)	135, 451, 688, 1192, 1309, 1491
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	5 cut(s)	399, 516, 517, 1129, 1144
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	1069
BspT107I	GGYRCC	1 cut(s)	1127
BsrDI	GCAATG	3 cut(s)	293, 311, 735
BsrI	ACTGG	7 cut(s)	607, 649, 767, 931, 1147, 1268, 1426
BssECI	CCNNGG	1 cut(s)	1138
BssMI	GATC	4 cut(s)	125, 184, 235, 808
BssT1I	CCWWGG	1 cut(s)	1138
Bst4CI	ACNGT	4 cut(s)	1077, 1157, 1348, 1366
Bst6I	CTCTTC	1 cut(s)	172
BstAPI	GCANNNNNTGC	2 cut(s)	292, 382
BstC8I	GCNNGC	2 cut(s)	1358, 1505
BstDEI	CTNAG	6 cut(s)	122, 438, 696, 1200, 1317, 1499
BstF5I	GGATG	6 cut(s)	297, 315, 406, 570, 593, 1318
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	3 cut(s)	67, 598, 1032
BstKTI	GATC	4 cut(s)	128, 187, 238, 811
BstMAI	GTCTC	3 cut(s)	566, 860, 1258
BstMBI	GATC	4 cut(s)	125, 184, 235, 808
BstNSI	RCATGY	4 cut(s)	385, 1118, 1478, 1507
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	2 cut(s)	482, 837
BstSLI	GKGCMC	2 cut(s)	245, 519
BstUI	CGCG	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	1221
BstX2I	RGATCY	1 cut(s)	125
BstXI	CCANNNNNNTGG	1 cut(s)	1433
BstYI	RGATCY	1 cut(s)	125
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	4 cut(s)	212, 314, 517, 1025
BtgZI	GCGATG	2 cut(s)	350, 356
BtsCI	GGATG	6 cut(s)	297, 315, 406, 570, 593, 1318
BtsI	GCAGTG	1 cut(s)	1409
BtsIMutI	CAGTG	6 cut(s)	600, 781, 846, 1162, 1409, 1433
BveI	ACCTGC	1 cut(s)	1069
Cac8I	GCNNGC	2 cut(s)	1358, 1505
CaiI	CAGNNNCTG	1 cut(s)	1336
CfoI	GCGC	3 cut(s)	67, 598, 1032
Cfr13I	GGNCC	6 cut(s)	211, 515, 516, 534, 1023, 1495
Csp6I	GTAC	3 cut(s)	322, 367, 424
CviAII	CATG	7 cut(s)	208, 316, 382, 1027, 1115, 1475, 1504
CviQI	GTAC	3 cut(s)	322, 367, 424
DdeI	CTNAG	6 cut(s)	122, 438, 696, 1200, 1317, 1499
DpnI	GATC	4 cut(s)	127, 186, 237, 810
DpnII	GATC	4 cut(s)	125, 184, 235, 808
DraI	TTTAAA	2 cut(s)	22, 759
DraIII	CACNNNGTG	1 cut(s)	1490
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	1138
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	2 cut(s)	534, 1495
Eco57I	CTGAAG	1 cut(s)	757
Eco81I	CCTNAGG	1 cut(s)	438
EcoO109I	RGGNCCY	2 cut(s)	515, 1495
EcoRI	GAATTC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	1138
EcoT22I	ATGCAT	1 cut(s)	1120
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	1138
FaeI	CATG	7 cut(s)	211, 319, 385, 1030, 1118, 1478, 1507
FatI	CATG	7 cut(s)	207, 315, 381, 1026, 1114, 1474, 1503
FauI	CCCGC	2 cut(s)	378, 1457
FokI	GGATG	6 cut(s)	304, 322, 393, 577, 600, 1325
FriOI	GRGCYC	1 cut(s)	519
FspAI	RTGCGCAY	1 cut(s)	1031
FspBI	CTAG	5 cut(s)	90, 156, 801, 876, 914
FspI	TGCGCA	2 cut(s)	597, 1031
GlaI	GCGC	3 cut(s)	66, 597, 1031
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	4 cut(s)	212, 314, 517, 1025
HapII	CCGG	2 cut(s)	326, 1222
HhaI	GCGC	3 cut(s)	67, 598, 1032
Hin1II	CATG	7 cut(s)	211, 319, 385, 1030, 1118, 1478, 1507
Hin6I	GCGC	3 cut(s)	65, 596, 1030
HinP1I	GCGC	3 cut(s)	65, 596, 1030
HincII	GTYRAC	1 cut(s)	1525
HindII	GTYRAC	1 cut(s)	1525
HinfI	GANTC	3 cut(s)	666, 1196, 1415
HpaI	GTTAAC	1 cut(s)	1525
HpaII	CCGG	2 cut(s)	326, 1222
HphI	GGTGA	5 cut(s)	404, 794, 974, 1256, 1502
Hpy166II	GTNNAC	3 cut(s)	367, 1112, 1525
Hpy188I	TCNGA	5 cut(s)	125, 197, 655, 1201, 1414
Hpy188III	TCNNGA	3 cut(s)	156, 532, 914
Hpy8I	GTNNAC	3 cut(s)	367, 1112, 1525
Hpy99I	CGWCG	2 cut(s)	527, 1136
HpyAV	CCTTC	4 cut(s)	563, 590, 781, 1303
HpyCH4III	ACNGT	4 cut(s)	1077, 1157, 1348, 1366
HpyCH4IV	ACGT	1 cut(s)	931
HpyF3I	CTNAG	6 cut(s)	122, 438, 696, 1200, 1317, 1499
HpySE526I	ACGT	1 cut(s)	931
Hsp92II	CATG	7 cut(s)	211, 319, 385, 1030, 1118, 1478, 1507
HspAI	GCGC	3 cut(s)	65, 596, 1030
KspAI	GTTAAC	1 cut(s)	1525
Kzo9I	GATC	4 cut(s)	125, 184, 235, 808
LmnI	GCTCC	3 cut(s)	403, 899, 1436
LweI	GCATC	8 cut(s)	282, 336, 578, 907, 1041, 1127, 1303, 1323
MaeI	CTAG	5 cut(s)	90, 156, 801, 876, 914
MaeII	ACGT	1 cut(s)	931
MaeIII	GTNAC	4 cut(s)	34, 501, 844, 1421
MalI	GATC	4 cut(s)	127, 186, 237, 810
MboI	GATC	4 cut(s)	125, 184, 235, 808
MboII	GAAGA	4 cut(s)	189, 194, 1074, 1226
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	3 cut(s)	245, 519, 1441
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	2 cut(s)	151, 618
MluNI	TGGCCA	1 cut(s)	314
MmeI	TCCRAC	4 cut(s)	246, 1165, 1252, 1392
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	1120
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	6 cut(s)	21, 621, 758, 894, 1524, 1537
MslI	CAYNNNNRTG	1 cut(s)	1242
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	3 cut(s)	481, 695, 1517
MspI	CCGG	2 cut(s)	326, 1222
MspR9I	CCNGG	1 cut(s)	326
MssI	GTTTAAAC	1 cut(s)	759
MvnI	CGCG	1 cut(s)	65
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	4 cut(s)	125, 184, 235, 808
NlaIII	CATG	7 cut(s)	211, 319, 385, 1030, 1118, 1478, 1507
NlaIV	GGNNCC	5 cut(s)	399, 516, 517, 1129, 1144
NmuCI	GTSAC	3 cut(s)	34, 501, 844
NsbI	TGCGCA	2 cut(s)	597, 1031
NsiI	ATGCAT	1 cut(s)	1120
NspI	RCATGY	4 cut(s)	385, 1118, 1478, 1507
PaeI	GCATGC	1 cut(s)	1507
PaqCI	CACCTGC	1 cut(s)	1069
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	666, 1196, 1415
PflFI	GACNNNGTC	1 cut(s)	527
PmeI	GTTTAAAC	1 cut(s)	759
PpuMI	RGGWCCY	1 cut(s)	1495
Psp5II	RGGWCCY	1 cut(s)	1495
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	5 cut(s)	399, 516, 517, 1129, 1144
PspOMI	GGGCCC	1 cut(s)	515
PspPI	GGNCC	6 cut(s)	211, 515, 516, 534, 1023, 1495
PspPPI	RGGWCCY	1 cut(s)	1495
PstI	CTGCAG	1 cut(s)	486
PstNI	CAGNNNCTG	1 cut(s)	1336
PsuI	RGATCY	1 cut(s)	125
PsyI	GACNNNGTC	1 cut(s)	527
PvuII	CAGCTG	3 cut(s)	481, 695, 1517
RsaI	GTAC	3 cut(s)	323, 368, 425
RsaNI	GTAC	3 cut(s)	322, 367, 424
RseI	CAYNNNNRTG	1 cut(s)	1242
SaqAI	TTAA	6 cut(s)	21, 621, 758, 894, 1524, 1537
Sau3AI	GATC	4 cut(s)	125, 184, 235, 808
Sau96I	GGNCC	6 cut(s)	211, 515, 516, 534, 1023, 1495
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	3 cut(s)	245, 519, 1441
SfaNI	GCATC	8 cut(s)	282, 336, 578, 907, 1041, 1127, 1303, 1323
SfcI	CTRYAG	2 cut(s)	482, 837
SinI	GGWCC	2 cut(s)	534, 1495
SmiMI	CAYNNNNRTG	1 cut(s)	1242
SpeI	ACTAGT	1 cut(s)	800
SphI	GCATGC	1 cut(s)	1507
Sse9I	AATT	2 cut(s)	151, 618
SspMI	CTAG	5 cut(s)	90, 156, 801, 876, 914
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	1138
TaaI	ACNGT	4 cut(s)	1077, 1157, 1348, 1366
TaiI	ACGT	1 cut(s)	934
TaqI	TCGA	2 cut(s)	1016, 1369
TasI	AATT	2 cut(s)	151, 618
TauI	GCSGC	6 cut(s)	70, 231, 332, 335, 398, 472
TfiI	GAWTC	3 cut(s)	666, 1196, 1415
Tru1I	TTAA	6 cut(s)	21, 621, 758, 894, 1524, 1537
Tru9I	TTAA	6 cut(s)	21, 621, 758, 894, 1524, 1537
TscAI	CASTG	6 cut(s)	607, 781, 853, 1162, 1409, 1433
TseFI	GTSAC	3 cut(s)	34, 501, 844
Tsp45I	GTSAC	3 cut(s)	34, 501, 844
TspDTI	ATGAA	6 cut(s)	192, 545, 876, 981, 1013, 1227
TspGWI	ACGGA	3 cut(s)	411, 600, 735
TspRI	CASTG	6 cut(s)	607, 781, 853, 1162, 1409, 1433
Tth111I	GACNNNGTC	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	534, 1495
XapI	RAATTY	1 cut(s)	151
XbaI	TCTAGA	2 cut(s)	155, 913
XceI	RCATGY	4 cut(s)	385, 1118, 1478, 1507
XspI	CTAG	5 cut(s)	90, 156, 801, 876, 914
Zsp2I	ATGCAT	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.