Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

20626029 .. 20627513

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAATCAAACACTCGCTGCCCAATTCTTAACCCGAGACCAAGTCACCAACTTTGTTGTACACGAAGGTAACGGTGTTAAAGGCTTGTCTGAGACCGGAATCAAAGTTCTTCCTGACCAATACATTCAGCCATTCGAAGAGAGACTGATCAACTTCCACGTAAAAGAGGATTCAGACGAATCCATACCCGTGATCGACATATCAAATTTAGACGAGAAGAGTGTCTCCAAGGCCGTATGTGATGCTGCAGAAGAATGGGGTTTCTTTCAGGTGATCAACCATGGCGTGTCAATGGAAGTTCTTGAGAATATGAAAACAGCTACTCACAGATTCTTCGGTTTACCGGTAGAAGAGAAAAGAAAGTTCTCAAGAGAGAAGTCTTTGTCAACGAATGTGAGATTCGGGACGAGTTTTAGTCCTCATGCTGAGAAAGCTCTCGAGTGGAAAGATTATCTGAGCCTCTTCTTTGTCTCTGAAGCTGAAGCATCACAACTCTGGCCTGACTCTTGCAGGAGTGAAACGCTAGAATACATGAACGAGACAAAACCTCTAGTGAAGAAACTCTTACGGTTTCTAGGCGAGAATCTGAACGTGAAAGAGCTAGACAAGACCAAAGAGTCATTCTTCATGGGTTCAACACGTATCAACCTCAACTATTACCCTATTTGTCCCAATCCAGAACTCACGGTTGGAGTCGGACGTCACTCTGATGTTTCCTCACTCACAATCCTCTTACAAGACGAGATCGGTGGTCTCCACGTTCGTTCTCTCACCACGGGGAGATGGGTTCACGTGCCTCCAATCTCCGGATCTTTAGTCATTAACATTGGAGACGCTATGCAAATCATGAGTAATGGTCGTTACAAGAGTGTTGAGCATCGTGTCTTAGCTAACGGTTCTTATAACAGAATCTCTGTTCCTATTTTCGTGAGCCCGAAACCAGAGTCTGTGATCGGTCCTCTTCTTGAAGTGATCGAAAATGGAGAGAAACCGGTTTATAAAGATATTCTTTATACCGATTACGTGAAACATTTCTTCAGAAAAGCTCATGATGGGAAGAAAACCATCGATTTTGCCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

40.88

Weight (kDa)

5.92

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	62 - 167	1.1e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	216 - 312	4.7e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	903, 999
AasI	GACNNNNNNGTC	1 cut(s)	616
AatII	GACGTC	1 cut(s)	703
AccIII	TCCGGA	1 cut(s)	806
AclWI	GGATC	1 cut(s)	817
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	3 cut(s)	495, 501, 1021
AcvI	CACGTG	1 cut(s)	793
AcyI	GRCGYC	1 cut(s)	700
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	806
AflIII	ACRYGT	1 cut(s)	638
AgeI	ACCGGT	2 cut(s)	343, 991
AgsI	TTSAA	2 cut(s)	636, 968
AjuI	GAANNNNNNNTTGG	4 cut(s)	605, 637, 672, 704
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	6 cut(s)	320, 434, 479, 601, 890, 1046
AluI	AGCT	6 cut(s)	320, 434, 479, 601, 890, 1046
Alw26I	GTCTC	8 cut(s)	30, 86, 136, 229, 475, 533, 758, 825
AlwI	GGATC	1 cut(s)	817
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	2 cut(s)	33, 437
Aor13HI	TCCGGA	1 cut(s)	806
AoxI	GGCC	2 cut(s)	231, 497
ApeKI	GCWGC	2 cut(s)	17, 245
ApoI	RAATTY	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
AsiGI	ACCGGT	2 cut(s)	343, 991
Asp700I	GAANNNNTTC	1 cut(s)	1031
AspS9I	GGNCC	1 cut(s)	956
AsuHPI	GGTGA	3 cut(s)	37, 283, 763
AsuII	TTCGAA	1 cut(s)	135
AvaI	CYCGRG	2 cut(s)	33, 437
AvaII	GGWCC	1 cut(s)	956
BanII	GRGCYC	1 cut(s)	935
BbrPI	CACGTG	1 cut(s)	793
BbvI	GCAGC	2 cut(s)	4, 232
BccI	CCATC	3 cut(s)	777, 1046, 1073
BceAI	ACGGC	1 cut(s)	218
BclI	TGATCA	2 cut(s)	147, 273
BcoDI	GTCTC	8 cut(s)	30, 86, 136, 229, 475, 533, 758, 825
BfaI	CTAG	4 cut(s)	524, 551, 575, 602
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	18, 246
BlsI	GCNGC	2 cut(s)	19, 247
Bme18I	GGWCC	1 cut(s)	956
BmeT110I	CYCGRG	2 cut(s)	33, 437
BmgT120I	GGNCC	1 cut(s)	956
BmsI	GCATC	3 cut(s)	232, 494, 886
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	323, 352
Bsa29I	ATCGAT	1 cut(s)	1068
BsaAI	YACGTR	4 cut(s)	160, 641, 793, 1024
BsaHI	GRCGYC	1 cut(s)	700
BsaI	GGTCTC	3 cut(s)	30, 86, 758
BsaJI	CCNNGG	3 cut(s)	228, 280, 774
BsaWI	WCCGGW	4 cut(s)	95, 343, 806, 991
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse118I	RCCGGY	2 cut(s)	343, 991
BseAI	TCCGGA	1 cut(s)	806
BseCI	ATCGAT	1 cut(s)	1068
BseDI	CCNNGG	3 cut(s)	228, 280, 774
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMII	CTCAG	3 cut(s)	81, 417, 446
BseXI	GCAGC	2 cut(s)	4, 232
BshFI	GGCC	2 cut(s)	233, 499
BshTI	ACCGGT	2 cut(s)	343, 991
BshVI	ATCGAT	1 cut(s)	1068
BsiHKCI	CYCGRG	2 cut(s)	33, 437
BsiSI	CCGG	4 cut(s)	96, 344, 807, 992
BslFI	GGGAC	2 cut(s)	418, 654
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	8 cut(s)	30, 86, 136, 229, 475, 533, 758, 825
BsmBI	CGTCTC	1 cut(s)	825
BsmFI	GGGAC	2 cut(s)	418, 654
BsnI	GGCC	2 cut(s)	233, 499
Bso31I	GGTCTC	3 cut(s)	30, 86, 758
BsoBI	CYCGRG	2 cut(s)	33, 437
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	935
Bsp13I	TCCGGA	1 cut(s)	806
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	7 cut(s)	147, 192, 273, 744, 809, 951, 972
Bsp19I	CCATGG	1 cut(s)	280
BspANI	GGCC	2 cut(s)	233, 499
BspCNI	CTCAG	3 cut(s)	82, 418, 447
BspDI	ATCGAT	1 cut(s)	1068
BspEI	TCCGGA	1 cut(s)	806
BspHI	TCATGA	2 cut(s)	846, 1048
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	1 cut(s)	817
BspT104I	TTCGAA	1 cut(s)	135
BspTNI	GGTCTC	3 cut(s)	30, 86, 758
BsrFI	RCCGGY	2 cut(s)	343, 991
BsrGI	TGTACA	1 cut(s)	58
BssAI	RCCGGY	2 cut(s)	343, 991
BssECI	CCNNGG	3 cut(s)	228, 280, 774
BssMI	GATC	7 cut(s)	147, 192, 273, 744, 809, 951, 972
BssNI	GRCGYC	1 cut(s)	700
BssT1I	CCWWGG	2 cut(s)	228, 280
Bst4CI	ACNGT	4 cut(s)	74, 570, 688, 896
Bst6I	CTCTTC	5 cut(s)	132, 212, 345, 467, 966
BstACI	GRCGYC	1 cut(s)	700
BstAUI	TGTACA	1 cut(s)	58
BstBAI	YACGTR	4 cut(s)	160, 641, 793, 1024
BstBI	TTCGAA	1 cut(s)	135
BstDEI	CTNAG	4 cut(s)	90, 426, 455, 886
BstDSI	CCRYGG	2 cut(s)	280, 774
BstKTI	GATC	7 cut(s)	150, 195, 276, 747, 812, 954, 975
BstMAI	GTCTC	8 cut(s)	30, 86, 136, 229, 475, 533, 758, 825
BstMBI	GATC	7 cut(s)	147, 192, 273, 744, 809, 951, 972
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	4, 232
BstX2I	RGATCY	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	809
Bsu15I	ATCGAT	1 cut(s)	1068
BsuRI	GGCC	2 cut(s)	233, 499
BsuTUI	ATCGAT	1 cut(s)	1068
BtgI	CCRYGG	2 cut(s)	280, 774
CaiI	CAGNNNCTG	1 cut(s)	947
CciI	TCATGA	2 cut(s)	846, 1048
Cfr10I	RCCGGY	2 cut(s)	343, 991
Cfr13I	GGNCC	1 cut(s)	956
ClaI	ATCGAT	1 cut(s)	1068
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	1 cut(s)	59
CspAI	ACCGGT	2 cut(s)	343, 991
CviAII	CATG	6 cut(s)	281, 422, 532, 628, 847, 1049
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	4 cut(s)	90, 426, 455, 886
DpnI	GATC	7 cut(s)	149, 194, 275, 746, 811, 953, 974
DpnII	GATC	7 cut(s)	147, 192, 273, 744, 809, 951, 972
DrdI	GACNNNNNNGTC	1 cut(s)	616
DseDI	GACNNNNNNGTC	1 cut(s)	616
Eam1104I	CTCTTC	5 cut(s)	132, 212, 345, 467, 966
EarI	CTCTTC	5 cut(s)	132, 212, 345, 467, 966
Eco130I	CCWWGG	2 cut(s)	228, 280
Eco24I	GRGCYC	1 cut(s)	935
Eco31I	GGTCTC	3 cut(s)	30, 86, 758
Eco47I	GGWCC	1 cut(s)	956
Eco57I	CTGAAG	3 cut(s)	495, 501, 1021
Eco72I	CACGTG	1 cut(s)	793
Eco88I	CYCGRG	2 cut(s)	33, 437
EcoT14I	CCWWGG	2 cut(s)	228, 280
EcoT38I	GRGCYC	1 cut(s)	935
ErhI	CCWWGG	2 cut(s)	228, 280
Esp3I	CGTCTC	1 cut(s)	825
FaeI	CATG	6 cut(s)	284, 425, 535, 631, 850, 1052
FalI	AAGNNNNNCTT	4 cut(s)	548, 580, 993, 1025
FaqI	GGGAC	2 cut(s)	418, 654
FatI	CATG	6 cut(s)	280, 421, 531, 627, 846, 1048
FbaI	TGATCA	2 cut(s)	147, 273
Fnu4HI	GCNGC	2 cut(s)	18, 246
FriOI	GRGCYC	1 cut(s)	935
Fsp4HI	GCNGC	2 cut(s)	18, 246
FspBI	CTAG	4 cut(s)	524, 551, 575, 602
GluI	GCNGC	2 cut(s)	18, 246
HaeIII	GGCC	2 cut(s)	233, 499
HapII	CCGG	4 cut(s)	96, 344, 807, 992
HgaI	GACGC	1 cut(s)	842
Hin1I	GRCGYC	1 cut(s)	700
Hin1II	CATG	6 cut(s)	284, 425, 535, 631, 850, 1052
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HpaII	CCGG	4 cut(s)	96, 344, 807, 992
HphI	GGTGA	3 cut(s)	37, 283, 763
Hpy166II	GTNNAC	4 cut(s)	61, 341, 387, 790
Hpy188I	TCNGA	8 cut(s)	91, 175, 456, 475, 588, 698, 709, 1040
Hpy8I	GTNNAC	4 cut(s)	61, 341, 387, 790
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	4 cut(s)	74, 570, 688, 896
HpyCH4IV	ACGT	7 cut(s)	159, 591, 640, 700, 759, 792, 1023
HpyCH4V	TGCA	3 cut(s)	248, 510, 841
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	4 cut(s)	90, 426, 455, 886
HpySE526I	ACGT	7 cut(s)	159, 591, 640, 700, 759, 792, 1023
Hsp92I	GRCGYC	1 cut(s)	700
Hsp92II	CATG	6 cut(s)	284, 425, 535, 631, 850, 1052
Kpn2I	TCCGGA	1 cut(s)	806
Ksp22I	TGATCA	2 cut(s)	147, 273
Kzo9I	GATC	7 cut(s)	147, 192, 273, 744, 809, 951, 972
Lsp1109I	GCAGC	2 cut(s)	4, 232
LweI	GCATC	3 cut(s)	232, 494, 886
MaeI	CTAG	4 cut(s)	524, 551, 575, 602
MaeII	ACGT	7 cut(s)	159, 591, 640, 700, 759, 792, 1023
MaeIII	GTNAC	4 cut(s)	43, 68, 701, 860
MalI	GATC	7 cut(s)	149, 194, 275, 746, 811, 953, 974
MboI	GATC	7 cut(s)	147, 192, 273, 744, 809, 951, 972
MflI	RGATCY	1 cut(s)	809
MhlI	GDGCHC	1 cut(s)	935
MluCI	AATT	2 cut(s)	23, 205
MlyI	GAGTC	4 cut(s)	497, 626, 702, 953
MmeI	TCCRAC	2 cut(s)	670, 676
MnlI	CCTC	9 cut(s)	160, 429, 470, 558, 659, 727, 740, 807, 969
MroI	TCCGGA	1 cut(s)	806
MroXI	GAANNNNTTC	1 cut(s)	1031
MseI	TTAA	3 cut(s)	29, 78, 822
MslI	CAYNNNNRTG	2 cut(s)	188, 708
MspI	CCGG	4 cut(s)	96, 344, 807, 992
MwoI	GCNNNNNNNGC	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	7 cut(s)	147, 192, 273, 744, 809, 951, 972
NlaIII	CATG	6 cut(s)	284, 425, 535, 631, 850, 1052
NmuCI	GTSAC	2 cut(s)	43, 701
NspV	TTCGAA	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	437
PagI	TCATGA	2 cut(s)	846, 1048
PdmI	GAANNNNTTC	1 cut(s)	1031
PfeI	GAWTC	8 cut(s)	4, 99, 170, 179, 330, 399, 583, 909
PflFI	GACNNNGTC	1 cut(s)	41
PinAI	ACCGGT	2 cut(s)	343, 991
PkrI	GCNGC	2 cut(s)	19, 247
PleI	GAGTC	4 cut(s)	497, 625, 701, 952
PmaCI	CACGTG	1 cut(s)	793
PmlI	CACGTG	1 cut(s)	793
PpsI	GAGTC	4 cut(s)	497, 625, 701, 952
Ppu21I	YACGTR	4 cut(s)	160, 641, 793, 1024
PsiI	TTATAA	2 cut(s)	903, 999
PspCI	CACGTG	1 cut(s)	793
PspPI	GGNCC	1 cut(s)	956
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	1 cut(s)	809
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	2 cut(s)	188, 708
SaqAI	TTAA	3 cut(s)	29, 78, 822
SatI	GCNGC	2 cut(s)	18, 246
Sau3AI	GATC	7 cut(s)	147, 192, 273, 744, 809, 951, 972
Sau96I	GGNCC	1 cut(s)	956
SchI	GAGTC	4 cut(s)	497, 626, 702, 953
SduI	GDGCHC	1 cut(s)	935
SfaNI	GCATC	3 cut(s)	232, 494, 886
SfcI	CTRYAG	1 cut(s)	246
Sfr274I	CTCGAG	1 cut(s)	437
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	1 cut(s)	956
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	188, 708
SmlI	CTYRAG	3 cut(s)	302, 367, 437
SmoI	CTYRAG	3 cut(s)	302, 367, 437
Sse9I	AATT	2 cut(s)	23, 205
SspMI	CTAG	4 cut(s)	524, 551, 575, 602
StyI	CCWWGG	2 cut(s)	228, 280
TaaI	ACNGT	4 cut(s)	74, 570, 688, 896
TaiI	ACGT	7 cut(s)	162, 594, 643, 703, 762, 795, 1026
TaqI	TCGA	5 cut(s)	135, 195, 438, 975, 1068
TaqII	GACCGA	1 cut(s)	944
TasI	AATT	2 cut(s)	23, 205
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	8 cut(s)	4, 99, 170, 179, 330, 399, 583, 909
Tru1I	TTAA	3 cut(s)	29, 78, 822
Tru9I	TTAA	3 cut(s)	29, 78, 822
TseFI	GTSAC	2 cut(s)	43, 701
TseI	GCWGC	2 cut(s)	17, 245
Tsp45I	GTSAC	2 cut(s)	43, 701
TspDTI	ATGAA	4 cut(s)	17, 326, 548, 616
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	956
XapI	RAATTY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	1031
XspI	CTAG	4 cut(s)	524, 551, 575, 602
ZraI	GACGTC	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.