Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Forward (+)

88763563 .. 88764883

Gene Structure 1321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCATCATCTATAAGCCAAAACATCACAGACCCTTCAGATCTCACTGATTTTGTCATAAACAAAGGCAATGGAGTAAAGGGTCTTTCCCAAATGGGACTCAAAAGCCTCCCAAAGCAATATATCCAACCCCTTGAAGAAAGAATGAGTATGAATATGACAAAAATGCCTGAAGAATCCATTCCCATCATTGACGTGTCAAACTGGGAGGACCCGAAAGTGGCAGAATCAATTTGCAATGCGACAGAGAAGTGGGGGTTCTTTCAACTACTCAACCATGGTGTGCCCATTGAAGTTCTTGAGCATGTCAAGGAAGCAACTCACAGGTTCTTTGAGATGCCAGCTGAGGAGAAGTGTAAGTTCTCGAAAGAGCATTCGTCTTCAAACAATGTCCGCTTTGGGACAAGCTTTAGGCCTGAAGCAGAGACGGCACTGGAGTGGAAAGACTGGCTTAGTCTCTTCTATGTTTCTGAGGATGAGGCCTCTGCACACTGGCCTCCAGTTTGCAAGACAGACATACTCATAAAACGACTCCTAGATATACTGATGAAAAGGCTAAACGTGACAGAAATAAACACAACCAAAGAACCACTTCTAATGGGATCCAGGCGAATTAACCTTAATTACTACCCCGTTTGCCCAAACCCTGAGCTGACGTACAGTTGGAGTTGGGCGTCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

227

Amino Acids

26.06

Weight (kDa)

5.34

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 162	1.8e-22	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	394
AclWI	GGATC	2 cut(s)	597, 610
AcuI	CTGAAG	3 cut(s)	21, 192, 438
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	137, 266, 293, 384
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	605
AleI	CACNNNNGTG	1 cut(s)	436
AluBI	AGCT	3 cut(s)	344, 408, 652
AluI	AGCT	3 cut(s)	344, 408, 652
Alw26I	GTCTC	2 cut(s)	419, 461
AlwI	GGATC	2 cut(s)	597, 610
AoxI	GGCC	3 cut(s)	413, 480, 494
Asp700I	GAANNNNTTC	2 cut(s)	180, 591
AspS9I	GGNCC	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	607
BcoDI	GTCTC	2 cut(s)	419, 461
BfaI	CTAG	1 cut(s)	536
BglII	AGATCT	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	607
Bme18I	GGWCC	1 cut(s)	211
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	213, 604
BmrFI	CCNGG	1 cut(s)	607
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	14, 327
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	2 cut(s)	455, 483
Bpu10I	CCTNAGC	2 cut(s)	345, 648
BpuEI	CTTGAG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	5 cut(s)	209, 438, 452, 497, 500
Bse3DI	GCAATG	2 cut(s)	76, 244
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	2 cut(s)	76, 244
BseMII	CTCAG	3 cut(s)	336, 462, 639
BseNI	ACTGG	5 cut(s)	209, 438, 452, 497, 500
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	3 cut(s)	415, 482, 496
BslFI	GGGAC	2 cut(s)	111, 415
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	419, 461
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	2 cut(s)	111, 415
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	415, 482, 496
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	40, 602
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	3 cut(s)	415, 482, 496
BspCNI	CTCAG	3 cut(s)	337, 463, 640
BspLI	GGNNCC	2 cut(s)	213, 604
BspPI	GGATC	2 cut(s)	597, 610
BsrDI	GCAATG	2 cut(s)	76, 244
BsrI	ACTGG	5 cut(s)	209, 438, 452, 497, 500
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	40, 602
BssNI	GRCGYC	1 cut(s)	674
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	674
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	4 cut(s)	345, 452, 471, 648
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	2 cut(s)	43, 605
BstMAI	GTCTC	2 cut(s)	419, 461
BstMBI	GATC	2 cut(s)	40, 602
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	1 cut(s)	607
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	605
BstSLI	GKGCMC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	40, 602
BstYI	RGATCY	2 cut(s)	40, 602
BsuRI	GGCC	3 cut(s)	415, 482, 496
BtgI	CCRYGG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	45, 431, 490
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	663
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	2 cut(s)	278, 305
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	4 cut(s)	345, 452, 471, 648
DpnI	GATC	2 cut(s)	42, 604
DpnII	GATC	2 cut(s)	40, 602
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	277
Eco147I	AGGCCT	2 cut(s)	415, 482
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	3 cut(s)	21, 192, 438
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	2 cut(s)	281, 308
FalI	AAGNNNNNCTT	4 cut(s)	435, 467, 576, 608
FaqI	GGGAC	2 cut(s)	111, 415
FatI	CATG	2 cut(s)	277, 304
FokI	GGATG	1 cut(s)	488
FspBI	CTAG	1 cut(s)	536
GsuI	CTGGAG	2 cut(s)	455, 483
HaeIII	GGCC	3 cut(s)	415, 482, 496
HgaI	GACGC	1 cut(s)	663
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	2 cut(s)	281, 308
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	4 cut(s)	99, 176, 227, 531
Hpy188I	TCNGA	3 cut(s)	40, 472, 683
Hpy188III	TCNNGA	2 cut(s)	299, 364
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	3 cut(s)	195, 561, 656
HpyCH4V	TGCA	3 cut(s)	237, 488, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	4 cut(s)	345, 452, 471, 648
HpySE526I	ACGT	3 cut(s)	195, 561, 656
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	2 cut(s)	281, 308
Kzo9I	GATC	2 cut(s)	40, 602
LweI	GCATC	2 cut(s)	14, 327
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	3 cut(s)	195, 561, 656
MaeIII	GTNAC	2 cut(s)	562, 675
MalI	GATC	2 cut(s)	42, 604
MboI	GATC	2 cut(s)	40, 602
MboII	GAAGA	4 cut(s)	149, 185, 372, 451
MflI	RGATCY	2 cut(s)	40, 602
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	3 cut(s)	231, 612, 622
MlyI	GAGTC	2 cut(s)	93, 525
MmeI	TCCRAC	2 cut(s)	151, 644
MnlI	CCTC	7 cut(s)	119, 202, 340, 466, 472, 493, 507
MroXI	GAANNNNTTC	2 cut(s)	180, 591
MseI	TTAA	2 cut(s)	615, 621
MslI	CAYNNNNRTG	2 cut(s)	194, 436
MspA1I	CMGCKG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	607
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	607
MwoI	GCNNNNNNNGC	1 cut(s)	428
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	2 cut(s)	40, 602
NlaIII	CATG	2 cut(s)	281, 308
NlaIV	GGNNCC	2 cut(s)	213, 604
NmuCI	GTSAC	2 cut(s)	562, 675
NspI	RCATGY	1 cut(s)	308
OliI	CACNNNNGTG	1 cut(s)	436
PceI	AGGCCT	2 cut(s)	415, 482
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	2 cut(s)	180, 591
PfeI	GAWTC	2 cut(s)	176, 227
PleI	GAGTC	2 cut(s)	93, 525
PpsI	GAGTC	2 cut(s)	93, 525
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	2 cut(s)	213, 604
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	40, 602
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	2 cut(s)	194, 436
SaqAI	TTAA	2 cut(s)	615, 621
Sau3AI	GATC	2 cut(s)	40, 602
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	93, 525
ScrFI	CCNGG	1 cut(s)	607
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	8 cut(s)	198, 329, 346, 410, 564, 621, 654, 659
SfaNI	GCATC	2 cut(s)	14, 327
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	194, 436
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	231, 612, 622
SseBI	AGGCCT	2 cut(s)	415, 482
SsiI	CCGC	1 cut(s)	394
SspMI	CTAG	1 cut(s)	536
StuI	AGGCCT	2 cut(s)	415, 482
StyD4I	CCNGG	1 cut(s)	605
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	3 cut(s)	198, 564, 659
TaqI	TCGA	1 cut(s)	365
TasI	AATT	3 cut(s)	231, 612, 622
TfiI	GAWTC	2 cut(s)	176, 227
Tru1I	TTAA	2 cut(s)	615, 621
Tru9I	TTAA	2 cut(s)	615, 621
TscAI	CASTG	3 cut(s)	52, 438, 497
TseFI	GTSAC	2 cut(s)	562, 675
Tsp45I	GTSAC	2 cut(s)	562, 675
TspDTI	ATGAA	2 cut(s)	167, 563
TspRI	CASTG	3 cut(s)	52, 438, 497
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	308
XmnI	GAANNNNTTC	2 cut(s)	180, 591
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.