Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

558471 .. 560155

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCCAAAGCCATCTCCGACCTCTCAGATATCACTGACTTTGTTATAAACAAAGGCAATGGAGTAAAGGGTCTCTCAGAATTGGGCCTCAAAAGCATCCCCAACCAATACATCCAACCCCTTGAAGAAAGAATCAGTACTATGATAATGTCCCAAGACTCCATTCCTATCATTGACATGTCGAATTGGAACGACCCGAAAGTGGTAGAATCTATTTGCAGTGCAGCAGAGAAGTTTGGGTTCTTTCAACTAGTGAATCACGGGGTGCCGGTTGAAGTGCTCGAGAATGTGAAGGAAGCAACTCATCGCTTCTTTTTGTTGCCAGCTGAGGCGAAGAGCAAGTACTCGAAAGAGCGTTCGCCTTCGAACAATGTCCAATATGGCACGAGCTTTAATCCTCAAGCAGAGAAGGCTCTGGAGTGGAAAGATTTCCTTGGTCTCTATGCTTATGGGGACGAGCATGAGGTCTCTGCGTTTTGGCCTCCTGTGTGCAGGGATGAAGTACTTGAATATATGAAGAAGTCTGAAATTCTTACAAAACGACTCGTAGAGTTGCTAATGAGAAGACTAAATGTGAAAGAAATAGACAAAGCAAAAGAATATCTTTTAATGGGGGCCAAGCGGATCCAGCTCAACTACTACCCCATTTGCCCAAATCCTGAGCTCGCAGTCGGAAATGGCCGTCACTCTGATATCTCAACGCTTACAATCCTCCTTCAGGACGATATTGGTGGGCTTTACGTGCGAAGGAATGACAATGGCAATGACAAGGATAGCGGCTGGATTCATGTTCCACCTGTGAAGGGGTCCTTAGTTATCAACATTGGTGATGCACTGCAAATAATAAGCAATGGGCGATACAAGAGCGTTGAGCATCGAGTAGCGGTCAATTCAAGTAAGAACAGGGTTTCGATTCCCATATTTGTCTTCCCAAGGCCATCTGAGATGATCTCTCCGTTGCCAGAGGTGCTTGAAAGTGGCGAGAAACCAGTGTATAAGTCAGTTCTCTTTTCTGATTATGTCAAGCATTTCTTTGCGAAGCCCCATAATGGAAAGACAACGATTGAGTTTGCCAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

40.6

Weight (kDa)

6.73

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	3 cut(s)	622, 777, 884
AclWI	GGATC	2 cut(s)	619, 632
AcoI	YGGCCR	2 cut(s)	3, 679
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	701
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	3 cut(s)	139, 344, 504
AfiI	CCNNNNNNNGG	4 cut(s)	202, 718, 803, 1049
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	6 cut(s)	125, 248, 275, 509, 894, 974
AhlI	ACTAGT	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	4 cut(s)	326, 390, 631, 664
AluI	AGCT	4 cut(s)	326, 390, 631, 664
Alw21I	GWGCWC	2 cut(s)	282, 666
Alw26I	GTCTC	3 cut(s)	77, 443, 472
AlwI	GGATC	2 cut(s)	619, 632
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	6 cut(s)	3, 85, 479, 615, 679, 935
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	428
AspS9I	GGNCC	3 cut(s)	85, 615, 807
AsuHPI	GGTGA	1 cut(s)	839
AsuII	TTCGAA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	807
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	666
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BauI	CACGAG	1 cut(s)	385
BbsI	GAAGAC	2 cut(s)	571, 919
Bbv12I	GWGCWC	2 cut(s)	282, 666
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	2 cut(s)	20, 946
BceAI	ACGGC	1 cut(s)	666
BcoDI	GTCTC	3 cut(s)	77, 443, 472
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	2 cut(s)	225, 778
BlsI	GCNGC	2 cut(s)	226, 779
BmcAI	AGTACT	3 cut(s)	139, 344, 504
Bme18I	GGWCC	1 cut(s)	807
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	3 cut(s)	85, 615, 807
BmiI	GGNNCC	4 cut(s)	267, 616, 626, 808
BmsI	GCATC	3 cut(s)	105, 820, 883
BpiI	GAAGAC	2 cut(s)	571, 919
BplI	GAGNNNNNCTC	2 cut(s)	935, 967
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	2 cut(s)	327, 660
Bpu14I	TTCGAA	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	742
BsaI	GGTCTC	3 cut(s)	77, 443, 472
BsaJI	CCNNGG	2 cut(s)	433, 932
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 718, 803, 1049
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	989
Bse3DI	GCAATG	3 cut(s)	64, 769, 856
BseDI	CCNNGG	2 cut(s)	433, 932
BseGI	GGATG	3 cut(s)	96, 111, 502
BseLI	CCNNNNNNNGG	4 cut(s)	202, 718, 803, 1049
BseMI	GCAATG	3 cut(s)	64, 769, 856
BseMII	CTCAG	5 cut(s)	39, 90, 318, 651, 933
BseNI	ACTGG	1 cut(s)	989
BseXI	GCAGC	1 cut(s)	236
BsgI	GTGCAG	2 cut(s)	243, 511
BshFI	GGCC	6 cut(s)	5, 87, 481, 617, 681, 937
BshNI	GGYRCC	1 cut(s)	265
BsiHKAI	GWGCWC	2 cut(s)	282, 666
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	2 cut(s)	136, 467
BslI	CCNNNNNNNGG	4 cut(s)	202, 718, 803, 1049
BsmAI	GTCTC	3 cut(s)	77, 443, 472
BsmFI	GGGAC	2 cut(s)	136, 467
BsnI	GGCC	6 cut(s)	5, 87, 481, 617, 681, 937
Bso31I	GGTCTC	3 cut(s)	77, 443, 472
BsoBI	CYCGRG	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	282, 666
Bsp143I	GATC	2 cut(s)	624, 948
BspACI	CCGC	3 cut(s)	622, 777, 884
BspANI	GGCC	6 cut(s)	5, 87, 481, 617, 681, 937
BspCNI	CTCAG	5 cut(s)	38, 89, 319, 652, 934
BspLI	GGNNCC	4 cut(s)	267, 616, 626, 808
BspPI	GGATC	2 cut(s)	619, 632
BspQI	GCTCTTC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	265
BspTNI	GGTCTC	3 cut(s)	77, 443, 472
BsrDI	GCAATG	3 cut(s)	64, 769, 856
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	989
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	433, 932
BssMI	GATC	2 cut(s)	624, 948
BssSI	CACGAG	1 cut(s)	385
BssT1I	CCWWGG	2 cut(s)	433, 932
Bst2BI	CACGAG	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	742
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	324, 666
BstDEI	CTNAG	6 cut(s)	25, 76, 327, 660, 811, 942
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	3 cut(s)	96, 111, 502
BstKTI	GATC	2 cut(s)	627, 951
BstMAI	GTCTC	3 cut(s)	77, 443, 472
BstMBI	GATC	2 cut(s)	624, 948
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 410, 628, 742, 967
BstNSI	RCATGY	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	2 cut(s)	571, 919
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	6 cut(s)	5, 87, 481, 617, 681, 937
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	96, 111, 502
BtsI	GCAGTG	2 cut(s)	226, 833
BtsIMutI	CAGTG	4 cut(s)	33, 226, 833, 996
Cac8I	GCNNGC	2 cut(s)	324, 666
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	85, 615, 807
Csp6I	GTAC	3 cut(s)	138, 343, 503
CviAII	CATG	3 cut(s)	178, 461, 788
CviQI	GTAC	3 cut(s)	138, 343, 503
DdeI	CTNAG	6 cut(s)	25, 76, 327, 660, 811, 942
DpnI	GATC	2 cut(s)	626, 950
DpnII	GATC	2 cut(s)	624, 948
DraIII	CACNNNGTG	1 cut(s)	265
EaeI	YGGCCR	2 cut(s)	3, 679
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	2 cut(s)	433, 932
Eco24I	GRGCYC	1 cut(s)	666
Eco31I	GGTCTC	3 cut(s)	77, 443, 472
Eco32I	GATATC	2 cut(s)	31, 694
Eco47I	GGWCC	1 cut(s)	807
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	664
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoO109I	RGGNCCY	1 cut(s)	807
EcoRV	GATATC	2 cut(s)	31, 694
EcoT14I	CCWWGG	2 cut(s)	433, 932
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	2 cut(s)	433, 932
FaeI	CATG	3 cut(s)	181, 464, 791
FalI	AAGNNNNNCTT	8 cut(s)	417, 449, 588, 620, 794, 826, 1016, 1048
FaqI	GGGAC	2 cut(s)	136, 467
FatI	CATG	3 cut(s)	177, 460, 787
Fnu4HI	GCNGC	2 cut(s)	225, 778
FokI	GGATG	3 cut(s)	83, 98, 509
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	2 cut(s)	225, 778
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	2 cut(s)	225, 778
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	6 cut(s)	5, 87, 481, 617, 681, 937
HapII	CCGG	1 cut(s)	269
Hin1II	CATG	3 cut(s)	181, 464, 791
HinfI	GANTC	7 cut(s)	132, 158, 209, 256, 543, 784, 913
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	839
Hpy188I	TCNGA	8 cut(s)	19, 28, 79, 526, 674, 691, 943, 1015
Hpy188III	TCNNGA	4 cut(s)	283, 416, 659, 719
HpyAV	CCTTC	6 cut(s)	286, 372, 403, 725, 741, 796
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	5 cut(s)	219, 224, 492, 833, 838
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 410, 628, 742, 967
HpyF3I	CTNAG	6 cut(s)	25, 76, 327, 660, 811, 942
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	3 cut(s)	181, 464, 791
Kzo9I	GATC	2 cut(s)	624, 948
LguI	GCTCTTC	1 cut(s)	329
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	3 cut(s)	105, 820, 883
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	2 cut(s)	626, 950
MboI	GATC	2 cut(s)	624, 948
MboII	GAAGA	5 cut(s)	137, 346, 529, 576, 919
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	2 cut(s)	282, 666
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	80, 184, 528, 889
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	152, 537
MmeI	TCCRAC	3 cut(s)	42, 139, 652
MnlI	CCTC	8 cut(s)	32, 98, 322, 408, 457, 492, 722, 958
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	393, 608
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	5 cut(s)	93, 410, 628, 742, 967
NdeII	GATC	2 cut(s)	624, 948
NlaIII	CATG	3 cut(s)	181, 464, 791
NlaIV	GGNNCC	4 cut(s)	267, 616, 626, 808
NmuCI	GTSAC	1 cut(s)	683
NspI	RCATGY	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	281
PciI	ACATGT	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	5 cut(s)	132, 209, 256, 784, 913
PkrI	GCNGC	2 cut(s)	226, 779
PleI	GAGTC	2 cut(s)	152, 537
PpsI	GAGTC	2 cut(s)	152, 537
Ppu21I	YACGTR	1 cut(s)	742
PpuMI	RGGWCCY	1 cut(s)	807
PscI	ACATGT	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	807
PspN4I	GGNNCC	4 cut(s)	267, 616, 626, 808
PspPI	GGNCC	3 cut(s)	85, 615, 807
PspPPI	RGGWCCY	1 cut(s)	807
PsuI	RGATCY	1 cut(s)	624
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	139, 344, 504
RsaNI	GTAC	3 cut(s)	138, 343, 503
RseI	CAYNNNNRTG	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	666
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	393, 608
SatI	GCNGC	2 cut(s)	225, 778
Sau3AI	GATC	2 cut(s)	624, 948
Sau96I	GGNCC	3 cut(s)	85, 615, 807
ScaI	AGTACT	3 cut(s)	139, 344, 504
SchI	GAGTC	2 cut(s)	152, 537
SduI	GDGCHC	2 cut(s)	282, 666
SetI	ASST	9 cut(s)	24, 328, 392, 468, 633, 666, 744, 799, 969
SfaNI	GCATC	3 cut(s)	105, 820, 883
Sfr274I	CTCGAG	1 cut(s)	281
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	1 cut(s)	807
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	2 cut(s)	281, 399
SmoI	CTYRAG	2 cut(s)	281, 399
SpeI	ACTAGT	1 cut(s)	250
Sse9I	AATT	4 cut(s)	80, 184, 528, 889
SsiI	CCGC	3 cut(s)	622, 777, 884
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	666
StyI	CCWWGG	2 cut(s)	433, 932
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	6 cut(s)	182, 282, 347, 365, 877, 911
TasI	AATT	4 cut(s)	80, 184, 528, 889
TatI	WGTACW	3 cut(s)	137, 342, 502
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	5 cut(s)	132, 209, 256, 784, 913
Tru1I	TTAA	2 cut(s)	393, 608
Tru9I	TTAA	2 cut(s)	393, 608
TscAI	CASTG	4 cut(s)	40, 226, 840, 996
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	3 cut(s)	513, 530, 776
TspGWI	ACGGA	1 cut(s)	945
TspRI	CASTG	4 cut(s)	40, 226, 840, 996
VpaK11BI	GGWCC	1 cut(s)	807
XagI	CCTNNNNNAGG	1 cut(s)	716
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	3 cut(s)	139, 344, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.