Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003727.1

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

53015 .. 55929

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003727.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgcctgaagaatccattcccatcattgacatgtcaaactgggaggacccgaaagtggcagaatcaatttgcaatgcggcagagaagtgggggttctttcaactactcaaccatggtgtgcccactgaagttcttgagcatgtcaaggacgcaactcacaggttctttgagatgccagctgaggagaagtgtaagttctcgaaagagcattcgtcttcaaccaatgtccgctttgggacaagctttagtcctgaagcagagacggcactggagtggaaagactggcttagtctcttctatgtttctgaggatgaggcctctgcacactggcctccagtttgcaaggctgaagtgctcgaatacatgaagaggacagacatactcataaaacgactcctagatatactgatgaaaaggctaaacgtgacagaaataaacacaaccaaagaaccacttctaatgggatccaggcgaatttaccttaattactaccccgtttgcccaaaccctgagctgacagttggagttgggcgtcactctgatgtctccacactcacaatcctccttcaagattgcatcggagggctttacgtccgacctgagactactgatgaagatacctgggtgcatgttcctccattggaagggtcattagtgatcaacgttggcgatgcactgcaaataatgagcaatggaaaatacaagagcgtcgagcatcgagtggctgctaatggaagtaagactagaatttcggttcccatatttgtgaatccgaggccatcggacgtgatagggcctctgcatgaagtgctagagagaaaccgttgtataagcaagttctgtattctgactatgtcaagcatttcttccggaaggctcatgatgggaagattacagttgacttcgccaaaatctgaaggtaatttcactactatatcggtacgtaccttgggaatgttccaatgctcttttgttttaaataaagaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

330

Amino Acids

37.28

Weight (kDa)

5.78

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	869
AciI	CCGC	2 cut(s)	77, 229
AclI	AACGTT	1 cut(s)	663
AclWI	GGATC	2 cut(s)	459, 472
AcsI	RAATTY	3 cut(s)	474, 747, 987
AcuI	CTGAAG	5 cut(s)	27, 147, 273, 369, 936
AcyI	GRCGYC	1 cut(s)	532
AfaI	GTAC	2 cut(s)	942, 946
AfiI	CCNNNNNNNGG	2 cut(s)	55, 644
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	101, 219, 569
AjiI	CACGTC	1 cut(s)	787
AjnI	CCWGG	2 cut(s)	467, 620
AleI	CACNNNNGTG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	179, 243, 514
AluI	AGCT	3 cut(s)	179, 243, 514
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	4 cut(s)	254, 296, 550, 596
AlwI	GGATC	2 cut(s)	459, 472
Aor13HI	TCCGGA	1 cut(s)	869
AoxI	GGCC	4 cut(s)	315, 329, 776, 794
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	3 cut(s)	474, 747, 987
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
Asp700I	GAANNNNTTC	2 cut(s)	15, 453
AspS9I	GGNCC	2 cut(s)	46, 794
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	123
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BamHI	GGATCC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	357
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	3 cut(s)	29, 787, 877
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	469, 622
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	4 cut(s)	254, 296, 550, 596
BfaI	CTAG	3 cut(s)	398, 744, 812
BisI	GCNGC	2 cut(s)	78, 726
BlsI	GCNGC	2 cut(s)	79, 727
Bme1390I	CCNGG	2 cut(s)	469, 622
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	787
BmgT120I	GGNCC	2 cut(s)	46, 794
BmiI	GGNNCC	3 cut(s)	48, 466, 756
BmrFI	CCNGG	2 cut(s)	469, 622
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	4 cut(s)	162, 585, 661, 724
BmuI	ACTGGG	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	2 cut(s)	290, 318
Bpu10I	CCTNAGC	2 cut(s)	180, 510
BpuEI	CTTGAG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	944
BsaHI	GRCGYC	1 cut(s)	532
BsaJI	CCNNGG	4 cut(s)	112, 621, 773, 948
BsaWI	WCCGGW	1 cut(s)	869
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 644
Bse1I	ACTGG	5 cut(s)	44, 273, 287, 332, 335
Bse3DI	GCAATG	2 cut(s)	79, 697
BseAI	TCCGGA	1 cut(s)	869
BseBI	CCWGG	2 cut(s)	469, 622
BseDI	CCNNGG	4 cut(s)	112, 621, 773, 948
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	55, 644
BseMI	GCAATG	2 cut(s)	79, 697
BseMII	CTCAG	4 cut(s)	171, 297, 501, 591
BseNI	ACTGG	5 cut(s)	44, 273, 287, 332, 335
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	4 cut(s)	317, 331, 778, 796
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	870
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	55, 644
BsmAI	GTCTC	4 cut(s)	254, 296, 550, 596
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	4 cut(s)	317, 331, 778, 796
Bsp1286I	GDGCHC	2 cut(s)	123, 357
Bsp13I	TCCGGA	1 cut(s)	869
Bsp143I	GATC	2 cut(s)	464, 657
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	2 cut(s)	77, 229
BspANI	GGCC	4 cut(s)	317, 331, 778, 796
BspCNI	CTCAG	4 cut(s)	172, 298, 502, 592
BspEI	TCCGGA	1 cut(s)	869
BspHI	TCATGA	1 cut(s)	879
BspLI	GGNNCC	3 cut(s)	48, 466, 756
BspPI	GGATC	2 cut(s)	459, 472
BsrDI	GCAATG	2 cut(s)	79, 697
BsrI	ACTGG	5 cut(s)	44, 273, 287, 332, 335
BssECI	CCNNGG	4 cut(s)	112, 621, 773, 948
BssMI	GATC	2 cut(s)	464, 657
BssNI	GRCGYC	1 cut(s)	532
BssT1I	CCWWGG	2 cut(s)	112, 948
Bst2UI	CCWGG	2 cut(s)	469, 622
Bst4CI	ACNGT	3 cut(s)	520, 824, 897
Bst6I	CTCTTC	2 cut(s)	299, 362
BstACI	GRCGYC	1 cut(s)	532
BstAPI	GCANNNNNTGC	1 cut(s)	808
BstBAI	YACGTR	1 cut(s)	944
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	5 cut(s)	180, 287, 306, 510, 600
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	2 cut(s)	467, 660
BstMAI	GTCTC	4 cut(s)	254, 296, 550, 596
BstMBI	GATC	2 cut(s)	464, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 808
BstNI	CCWGG	2 cut(s)	469, 622
BstNSI	RCATGY	3 cut(s)	34, 143, 632
BstSCI	CCNGG	2 cut(s)	467, 620
BstSLI	GKGCMC	1 cut(s)	123
BstSNI	TACGTA	1 cut(s)	944
BstV1I	GCAGC	1 cut(s)	712
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	4 cut(s)	317, 331, 778, 796
BtgI	CCRYGG	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	684
BtrI	CACGTC	1 cut(s)	787
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	4 cut(s)	123, 266, 325, 674
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	879
Cfr13I	GGNCC	2 cut(s)	46, 794
CseI	GACGC	3 cut(s)	158, 521, 697
Csp6I	GTAC	2 cut(s)	941, 945
CviAII	CATG	7 cut(s)	31, 113, 140, 364, 629, 803, 880
CviQI	GTAC	2 cut(s)	941, 945
DdeI	CTNAG	5 cut(s)	180, 287, 306, 510, 600
DpnI	GATC	2 cut(s)	466, 659
DpnII	GATC	2 cut(s)	464, 657
DraI	TTTAAA	1 cut(s)	978
Eam1104I	CTCTTC	2 cut(s)	299, 362
EarI	CTCTTC	2 cut(s)	299, 362
Eco105I	TACGTA	1 cut(s)	944
Eco130I	CCWWGG	2 cut(s)	112, 948
Eco147I	AGGCCT	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	5 cut(s)	27, 147, 273, 369, 936
EcoO109I	RGGNCCY	2 cut(s)	46, 794
EcoRII	CCWGG	2 cut(s)	467, 620
EcoT14I	CCWWGG	2 cut(s)	112, 948
ErhI	CCWWGG	2 cut(s)	112, 948
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	7 cut(s)	34, 116, 143, 367, 632, 806, 883
FalI	AAGNNNNNCTT	6 cut(s)	270, 302, 438, 470, 850, 882
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	7 cut(s)	30, 112, 139, 363, 628, 802, 879
FbaI	TGATCA	1 cut(s)	657
Fnu4HI	GCNGC	2 cut(s)	78, 726
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	78, 726
FspBI	CTAG	3 cut(s)	398, 744, 812
GluI	GCNGC	2 cut(s)	78, 726
GsuI	CTGGAG	2 cut(s)	290, 318
HaeIII	GGCC	4 cut(s)	317, 331, 778, 796
HapII	CCGG	1 cut(s)	870
HgaI	GACGC	3 cut(s)	158, 521, 697
Hin1I	GRCGYC	1 cut(s)	532
Hin1II	CATG	7 cut(s)	34, 116, 143, 367, 632, 806, 883
HincII	GTYRAC	1 cut(s)	900
HindII	GTYRAC	1 cut(s)	900
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	4 cut(s)	11, 62, 393, 769
HpaII	CCGG	1 cut(s)	870
Hpy166II	GTNNAC	1 cut(s)	900
Hpy188I	TCNGA	8 cut(s)	307, 541, 581, 596, 774, 784, 849, 916
Hpy188III	TCNNGA	6 cut(s)	134, 199, 251, 569, 870, 880
Hpy8I	GTNNAC	1 cut(s)	900
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	4 cut(s)	575, 638, 867, 911
HpyCH4III	ACNGT	3 cut(s)	520, 824, 897
HpyCH4IV	ACGT	5 cut(s)	423, 591, 663, 786, 943
HpyCH4V	TGCA	8 cut(s)	72, 323, 342, 576, 628, 674, 679, 802
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 808
HpyF3I	CTNAG	5 cut(s)	180, 287, 306, 510, 600
HpySE526I	ACGT	5 cut(s)	423, 591, 663, 786, 943
Hsp92I	GRCGYC	1 cut(s)	532
Hsp92II	CATG	7 cut(s)	34, 116, 143, 367, 632, 806, 883
Kpn2I	TCCGGA	1 cut(s)	869
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	2 cut(s)	464, 657
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	4 cut(s)	162, 585, 661, 724
MaeI	CTAG	3 cut(s)	398, 744, 812
MaeII	ACGT	5 cut(s)	423, 591, 663, 786, 943
MaeIII	GTNAC	2 cut(s)	424, 533
MalI	GATC	2 cut(s)	466, 659
MboI	GATC	2 cut(s)	464, 657
MboII	GAAGA	7 cut(s)	20, 207, 286, 379, 626, 858, 900
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	2 cut(s)	123, 357
MluCI	AATT	6 cut(s)	66, 474, 484, 747, 922, 987
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	2 cut(s)	502, 619
MroI	TCCGGA	1 cut(s)	869
MroXI	GAANNNNTTC	2 cut(s)	15, 453
MseI	TTAA	2 cut(s)	483, 977
MslI	CAYNNNNRTG	4 cut(s)	29, 271, 540, 764
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	870
MspR9I	CCNGG	2 cut(s)	469, 622
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	2 cut(s)	469, 622
MwoI	GCNNNNNNNGC	2 cut(s)	263, 808
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	2 cut(s)	464, 657
NlaIII	CATG	7 cut(s)	34, 116, 143, 367, 632, 806, 883
NlaIV	GGNNCC	3 cut(s)	48, 466, 756
NmuCI	GTSAC	2 cut(s)	424, 533
NspI	RCATGY	3 cut(s)	34, 143, 632
OliI	CACNNNNGTG	1 cut(s)	271
PagI	TCATGA	1 cut(s)	879
PceI	AGGCCT	1 cut(s)	317
PciI	ACATGT	1 cut(s)	30
PctI	GAATGC	1 cut(s)	208
PdmI	GAANNNNTTC	2 cut(s)	15, 453
PfeI	GAWTC	3 cut(s)	11, 62, 769
PflFI	GACNNNGTC	1 cut(s)	853
PkrI	GCNGC	2 cut(s)	79, 727
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	944
PpuMI	RGGWCCY	1 cut(s)	46
PscI	ACATGT	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	663
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	467, 620
PspGI	CCWGG	2 cut(s)	467, 620
PspN4I	GGNNCC	3 cut(s)	48, 466, 756
PspPI	GGNCC	2 cut(s)	46, 794
PspPPI	RGGWCCY	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	464
PsyI	GACNNNGTC	1 cut(s)	853
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	942, 946
RsaNI	GTAC	2 cut(s)	941, 945
RseI	CAYNNNNRTG	4 cut(s)	29, 271, 540, 764
SaqAI	TTAA	2 cut(s)	483, 977
SatI	GCNGC	2 cut(s)	78, 726
Sau3AI	GATC	2 cut(s)	464, 657
Sau96I	GGNCC	2 cut(s)	46, 794
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	2 cut(s)	469, 622
SduI	GDGCHC	2 cut(s)	123, 357
SfaNI	GCATC	4 cut(s)	162, 585, 661, 724
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	4 cut(s)	29, 271, 540, 764
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SnaBI	TACGTA	1 cut(s)	944
Sse9I	AATT	6 cut(s)	66, 474, 484, 747, 922, 987
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	2 cut(s)	77, 229
SspMI	CTAG	3 cut(s)	398, 744, 812
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	467, 620
StyI	CCWWGG	2 cut(s)	112, 948
TaaI	ACNGT	3 cut(s)	520, 824, 897
TaiI	ACGT	5 cut(s)	426, 594, 666, 789, 946
TaqI	TCGA	4 cut(s)	200, 357, 711, 718
TasI	AATT	6 cut(s)	66, 474, 484, 747, 922, 987
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	3 cut(s)	11, 62, 769
Tru1I	TTAA	2 cut(s)	483, 977
Tru9I	TTAA	2 cut(s)	483, 977
TscAI	CASTG	4 cut(s)	130, 273, 332, 681
TseFI	GTSAC	2 cut(s)	424, 533
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	2 cut(s)	424, 533
TspDTI	ATGAA	4 cut(s)	380, 425, 627, 819
TspRI	CASTG	4 cut(s)	130, 273, 332, 681
Tth111I	GACNNNGTC	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	3 cut(s)	474, 747, 987
XceI	RCATGY	3 cut(s)	34, 143, 632
XmnI	GAANNNNTTC	2 cut(s)	15, 453
XspI	CTAG	3 cut(s)	398, 744, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.