Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

1778861 .. 1779379

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAAAGGCTAAACGTGACAGAAATAGACGCAACCAAAGAACCAATTATAATGGGATCCAAGCGAATTAACCTCAACTACTACCCCGTTTGCCCAAACCCTGAGCTGACAGTTGGAGTTGGGCGTCACTCTGATGTCTCCACACTCACAATCCTCCTTCAAGACTACATCGGAGGGCTTTACGTCCGAGCTGAGACTACTGATGAAGATAGCTGGGTGCATGTTCCTCCGTTGGAAGGGTCATTAGTGATCAACGTTGGTGATGCACTGCAAATAATGAGCAATGGAAAATACAAGAGCGTCGAGCATCGAGTGGTTGCTAATGGAAGTACGACTAGAATTTCGGTTCCCATATTTGTGAATCCGAGGCCATCGGACGTGATAGGGCCTCTGCCTGAAGTGCTTGAGAGTAGTAGGGAGAAGGCATTGTATAAGCAAGTTCTGTATTCTGACTATGTCAGGCATTTCTTCCGGAAGGCACATGATGGGAAGAGCACAGTTGACTTTGCTAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

172

Amino Acids

19.21

Weight (kDa)

6.97

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	24 - 122	1.8e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	471
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	2 cut(s)	51, 64
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	379
AluBI	AGCT	3 cut(s)	106, 191, 213
AluI	AGCT	3 cut(s)	106, 191, 213
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	142, 188
AlwI	GGATC	2 cut(s)	51, 64
Aor13HI	TCCGGA	1 cut(s)	471
AoxI	GGCC	2 cut(s)	368, 386
ApoI	RAATTY	1 cut(s)	339
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	497
BccI	CCATC	2 cut(s)	379, 479
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	142, 188
BfaI	CTAG	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	58, 348
BmsI	GCATC	2 cut(s)	253, 316
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	93, 183
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	370, 388
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	142, 188
BsnI	GGCC	2 cut(s)	370, 388
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	56, 249
BspANI	GGCC	2 cut(s)	370, 388
BspCNI	CTCAG	2 cut(s)	94, 184
BspEI	TCCGGA	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	58, 348
BspPI	GGATC	2 cut(s)	51, 64
BspQI	GCTCTTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	2 cut(s)	56, 249
BssNI	GRCGYC	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	112, 499
Bst6I	CTCTTC	1 cut(s)	485
BstACI	GRCGYC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	102, 192
BstKTI	GATC	2 cut(s)	59, 252
BstMAI	GTCTC	2 cut(s)	142, 188
BstMBI	GATC	2 cut(s)	56, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	370, 388
BtrI	CACGTC	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	386
CseI	GACGC	3 cut(s)	38, 113, 289
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	2 cut(s)	221, 482
CviJI	RGCY	7 cut(s)	10, 106, 178, 191, 213, 370, 388
CviKI_1	RGCY	7 cut(s)	10, 106, 178, 191, 213, 370, 388
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	2 cut(s)	102, 192
DpnI	GATC	2 cut(s)	58, 251
DpnII	GATC	2 cut(s)	56, 249
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	386
FaeI	CATG	2 cut(s)	224, 485
FaiI	YATR	6 cut(s)	50, 222, 353, 432, 456, 483
FatI	CATG	2 cut(s)	220, 481
FbaI	TGATCA	1 cut(s)	249
FspBI	CTAG	1 cut(s)	336
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	370, 388
HapII	CCGG	1 cut(s)	472
HgaI	GACGC	3 cut(s)	38, 113, 289
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	224, 485
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	7 cut(s)	133, 173, 188, 366, 376, 451, 518
Hpy188III	TCNNGA	2 cut(s)	161, 472
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	4 cut(s)	167, 230, 415, 469
HpyCH4III	ACNGT	2 cut(s)	112, 499
HpyCH4IV	ACGT	4 cut(s)	15, 183, 255, 378
HpyCH4V	TGCA	3 cut(s)	220, 266, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	2 cut(s)	102, 192
HpySE526I	ACGT	4 cut(s)	15, 183, 255, 378
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	2 cut(s)	224, 485
Kpn2I	TCCGGA	1 cut(s)	471
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	56, 249
LguI	GCTCTTC	1 cut(s)	485
LpnPI	CCDG	5 cut(s)	114, 199, 408, 445, 485
LweI	GCATC	2 cut(s)	253, 316
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	4 cut(s)	15, 183, 255, 378
MaeIII	GTNAC	2 cut(s)	16, 125
MalI	GATC	2 cut(s)	58, 251
MboI	GATC	2 cut(s)	56, 249
MboII	GAAGA	3 cut(s)	218, 460, 502
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	3 cut(s)	45, 66, 339
MmeI	TCCRAC	2 cut(s)	94, 213
MnlI	CCTC	6 cut(s)	83, 164, 167, 237, 360, 399
MroI	TCCGGA	1 cut(s)	471
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	2 cut(s)	132, 356
MspI	CCGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	2 cut(s)	56, 249
NlaIII	CATG	2 cut(s)	224, 485
NlaIV	GGNNCC	2 cut(s)	58, 348
NmuCI	GTSAC	2 cut(s)	16, 125
NspI	RCATGY	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	361
PflFI	GACNNNGTC	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	50
Psp1406I	AACGTT	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	58, 348
PspPI	GGNCC	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	455
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	2 cut(s)	132, 356
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	56, 249
Sau96I	GGNCC	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	8 cut(s)	18, 75, 108, 186, 193, 215, 258, 381
SfaNI	GCATC	2 cut(s)	253, 316
SmiMI	CAYNNNNRTG	2 cut(s)	132, 356
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	3 cut(s)	45, 66, 339
SspMI	CTAG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	112, 499
TaiI	ACGT	4 cut(s)	18, 186, 258, 381
TaqI	TCGA	2 cut(s)	303, 310
TasI	AATT	3 cut(s)	45, 66, 339
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	2 cut(s)	16, 125
Tsp45I	GTSAC	2 cut(s)	16, 125
TspDTI	ATGAA	2 cut(s)	17, 219
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	273
Tth111I	GACNNNGTC	1 cut(s)	455
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.