Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003727.1

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

5340 .. 6531

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003727.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgccggctgaggagaagtgtaagttctcgaaagagcattcgtcttcaaacaatgtccggtttgggacaagctttagtcctgaagcagagaaggcactggagtggaaagactggcttagtctcttctatgtttctgaggatgaggcctctgcacactggcctccagtttgcaaggctgaagtgctcgaatacatgaagaggacagatatactcataaaacgactcctagagatactgatgaaaaggttaaacgtgacagaaatagacacaaccaaagaaccacttctaatgggatccaagcgaattaacctcaactactaccccgtttgcccaaaccctgagctgacagttggagttgggcgtcactctgatgtctccacactcacaatcctccttcaagactacgtcggagggctttacgtccgagctgagactactgatgaagatagctgggtgcatgttcctccattggaagggtcattagtgatcaacgttggtgatgcactgcaaataatgagcaatggaaaatacaagagcgtcgagcatcgagtggttgctaatggaagtaagactagaatttcggttcccatatttgtgaatccgaggccatcggacgtgatagggcctctgcatgaagtgcttctagtgacaataagtctttcatttgtaagtgaaatgtcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

227

Amino Acids

25.49

Weight (kDa)

5.57

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	2 cut(s)	288, 301
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	2 cut(s)	102, 198
AcyI	GRCGYC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	48, 398
AhdI	GACNNNNNGTC	1 cut(s)	654
AjiI	CACGTC	1 cut(s)	616
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	4 cut(s)	72, 343, 428, 450
AluI	AGCT	4 cut(s)	72, 343, 428, 450
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	3 cut(s)	125, 379, 425
AlwI	GGATC	2 cut(s)	288, 301
AoxI	GGCC	4 cut(s)	144, 158, 605, 623
ApoI	RAATTY	1 cut(s)	576
ArsI	GACNNNNNNTTYG	2 cut(s)	562, 594
Asp700I	GAANNNNTTC	2 cut(s)	282, 639
AspS9I	GGNCC	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	509
BamHI	GGATCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	9
BccI	CCATC	1 cut(s)	616
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	3 cut(s)	125, 379, 425
BfaI	CTAG	3 cut(s)	227, 573, 644
BmeRI	GACNNNNNGTC	1 cut(s)	654
BmgBI	CACGTC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	2 cut(s)	295, 585
BmsI	GCATC	2 cut(s)	490, 553
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	2 cut(s)	119, 147
Bpu10I	CCTNAGC	2 cut(s)	9, 339
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	602
BsaWI	WCCGGW	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	4 cut(s)	102, 116, 161, 164
Bse3DI	GCAATG	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	3 cut(s)	126, 330, 420
BseNI	ACTGG	4 cut(s)	102, 116, 161, 164
BseRI	GAGGAG	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	146, 160, 607, 625
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	5, 58
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	3 cut(s)	125, 379, 425
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	4 cut(s)	146, 160, 607, 625
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	293, 486
BspANI	GGCC	4 cut(s)	146, 160, 607, 625
BspCNI	CTCAG	3 cut(s)	127, 331, 421
BspLI	GGNNCC	2 cut(s)	295, 585
BspPI	GGATC	2 cut(s)	288, 301
BsrDI	GCAATG	1 cut(s)	526
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	4 cut(s)	102, 116, 161, 164
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	2 cut(s)	293, 486
BssNI	GRCGYC	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	128, 191
BstACI	GRCGYC	1 cut(s)	361
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	9, 116, 135, 339, 429
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	296, 489
BstMAI	GTCTC	3 cut(s)	125, 379, 425
BstMBI	GATC	2 cut(s)	293, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 637
BstNSI	RCATGY	1 cut(s)	461
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	4 cut(s)	146, 160, 607, 625
BtrI	CACGTC	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	3 cut(s)	95, 154, 503
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	623
CseI	GACGC	2 cut(s)	350, 526
CviAII	CATG	3 cut(s)	193, 458, 632
DdeI	CTNAG	5 cut(s)	9, 116, 135, 339, 429
DpnI	GATC	2 cut(s)	295, 488
DpnII	GATC	2 cut(s)	293, 486
DriI	GACNNNNNGTC	1 cut(s)	654
Eam1104I	CTCTTC	2 cut(s)	128, 191
Eam1105I	GACNNNNNGTC	1 cut(s)	654
EarI	CTCTTC	2 cut(s)	128, 191
Eco147I	AGGCCT	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	102, 198
EcoO109I	RGGNCCY	1 cut(s)	623
FaeI	CATG	3 cut(s)	196, 461, 635
FaiI	YATR	7 cut(s)	129, 194, 209, 215, 459, 590, 633
FalI	AAGNNNNNCTT	4 cut(s)	99, 131, 267, 299
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	192, 457, 631
FbaI	TGATCA	1 cut(s)	486
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	3 cut(s)	227, 573, 644
GsaI	CCCAGC	1 cut(s)	454
GsuI	CTGGAG	2 cut(s)	119, 147
HaeIII	GGCC	4 cut(s)	146, 160, 607, 625
HapII	CCGG	2 cut(s)	5, 58
HgaI	GACGC	2 cut(s)	350, 526
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	196, 461, 635
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	2 cut(s)	222, 598
HpaII	CCGG	2 cut(s)	5, 58
HphI	GGTGA	1 cut(s)	509
Hpy188I	TCNGA	6 cut(s)	136, 370, 410, 425, 603, 613
Hpy188III	TCNNGA	4 cut(s)	28, 80, 398, 681
Hpy99I	CGWCG	2 cut(s)	410, 542
HpyAV	CCTTC	3 cut(s)	85, 404, 467
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	5 cut(s)	252, 405, 420, 492, 615
HpyCH4V	TGCA	6 cut(s)	152, 171, 457, 503, 508, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 637
HpyF3I	CTNAG	5 cut(s)	9, 116, 135, 339, 429
HpySE526I	ACGT	5 cut(s)	252, 405, 420, 492, 615
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	3 cut(s)	196, 461, 635
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	293, 486
LpnPI	CCDG	9 cut(s)	18, 71, 83, 93, 97, 142, 177, 351, 436
LweI	GCATC	2 cut(s)	490, 553
MaeI	CTAG	3 cut(s)	227, 573, 644
MaeII	ACGT	5 cut(s)	252, 405, 420, 492, 615
MaeIII	GTNAC	3 cut(s)	253, 362, 646
MalI	GATC	2 cut(s)	295, 488
MboI	GATC	2 cut(s)	293, 486
MboII	GAAGA	4 cut(s)	36, 115, 208, 455
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	303, 576
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	2 cut(s)	331, 388
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	2 cut(s)	282, 639
MseI	TTAA	2 cut(s)	248, 306
MslI	CAYNNNNRTG	3 cut(s)	100, 369, 593
MspI	CCGG	2 cut(s)	5, 58
Mva1269I	GAATGC	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	92, 637
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	2 cut(s)	293, 486
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	196, 461, 635
NlaIV	GGNNCC	2 cut(s)	295, 585
NmuCI	GTSAC	3 cut(s)	253, 362, 646
NspI	RCATGY	1 cut(s)	461
OliI	CACNNNNGTG	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	146
PctI	GAATGC	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	2 cut(s)	282, 639
PfeI	GAWTC	1 cut(s)	598
PflFI	GACNNNGTC	1 cut(s)	404
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp1406I	AACGTT	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	295, 585
PspPI	GGNCC	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	404
RseI	CAYNNNNRTG	3 cut(s)	100, 369, 593
SaqAI	TTAA	2 cut(s)	248, 306
Sau3AI	GATC	2 cut(s)	293, 486
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	490, 553
SmiMI	CAYNNNNRTG	3 cut(s)	100, 369, 593
Sse9I	AATT	2 cut(s)	303, 576
SseBI	AGGCCT	1 cut(s)	146
SspMI	CTAG	3 cut(s)	227, 573, 644
StuI	AGGCCT	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	5 cut(s)	255, 408, 423, 495, 618
TaqI	TCGA	4 cut(s)	29, 186, 540, 547
TasI	AATT	2 cut(s)	303, 576
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	2 cut(s)	248, 306
Tru9I	TTAA	2 cut(s)	248, 306
TscAI	CASTG	3 cut(s)	102, 161, 510
TseFI	GTSAC	3 cut(s)	253, 362, 646
Tsp45I	GTSAC	3 cut(s)	253, 362, 646
TspDTI	ATGAA	5 cut(s)	209, 254, 456, 648, 651
TspRI	CASTG	3 cut(s)	102, 161, 510
Tth111I	GACNNNGTC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	576
XceI	RCATGY	1 cut(s)	461
XmnI	GAANNNNTTC	2 cut(s)	282, 639
XspI	CTAG	3 cut(s)	227, 573, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.