Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Forward (+)

4449259 .. 4450811

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTCCAACACTCTTGACAACCCAATTCTCAAATCCAGCTGAAGTAACCGACTTTGTAGTCTACAAAGGAAATGGTGTTAAGGGTTTATCAGAAACAGGAATCAAAGCTCTTCCAGAACAATACATTCAGCCACTTGAAGAACGACTCATCAACAAATTCGTCAACGAAACAGATGAAGCCATTCCAGTTATCGATATGTCGAACCCTGATGAGGACAGAGTCGCTGAAGCTGTTTGTGATGCTGCTGAGAAATGGGGGTTCTTTCAAGTGATCAATCATGGAGTTCCTTTGGAAGTTCTTGATGACGTCAAGGCTGCGACTCACAAGTTCTTCAATCTCCCTGTTGAAGAGAAGCGCAAGTTCACTAAAGAGAATTCGCTGTCGACGACTGTTAGGTTTGGGACGAGTTTTAGTCCTCTTGCAGAGCAAGCGCTTGAGTGGAAAGATTATCTCAGCCTCTTCTTTGTCTCTGAAGCTGAAGCTGAACAGTTCTGGCCTGATATCTGCAGGAATGAAACGTTAGAGTACATTAACAAGTCAAAGAAGATGGTGAGGAGGCTTCTAGAGTATTTGGGAAAGAATCTCAATGTTAAAGAGCTTGACGAGACGAAAGAATCACTCTTTATGGGCTCGATTCGAGTCAACCTTAACTACTACCCCATCTGCCCTAATCCGGACCTAACAGTTGGTGTTGGTCGCCACTCAGACGTCTCTTCTCTCACCATTCTCTTACAAGACCAGATCGGTGGTCTACACGTGCGTTCTCTGGCTTCAGGGAACTGGGTTCACGTGCCTCCGGTTGCTGGATCTTTTGTGATCAACATCGGAGATGCGATGCAGATCATGAGCAATGGTCTGTACAAGAGCGTGGAGCATCGTGTCTTAGCCAATGGTTACAATAATAGAATCTCTGTTCCTATCTTTGTGAACCCAAAACCAGAGTCAGTTATTGGTCCTCTACCTGAGGTGATTGCAAACGGAGAGGAACCGATTTACAGAGACGTCCTGTACTCTGATTACGTCAAGTATTTCTTCAGGAAGGCACACGATGGAAAGAAAACCGTCGATTACGCCAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 map00940 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

40.67

Weight (kDa)

5.26

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	62 - 167	9.3e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	216 - 312	1.8e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AatII	GACGTC	3 cut(s)	312, 714, 1008
AccI	GTMKAC	3 cut(s)	63, 386, 754
AccIII	TCCGGA	1 cut(s)	676
AclI	AACGTT	1 cut(s)	521
AclWI	GGATC	1 cut(s)	817
AcsI	RAATTY	2 cut(s)	158, 376
AcuI	CTGAAG	6 cut(s)	63, 249, 495, 501, 759, 1021
AcvI	CACGTG	2 cut(s)	760, 793
AcyI	GRCGYC	3 cut(s)	309, 711, 1005
AfaI	GTAC	3 cut(s)	530, 863, 1013
AfeI	AGCGCT	1 cut(s)	435
AfiI	CCNNNNNNNGG	3 cut(s)	214, 676, 806
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	4 cut(s)	140, 269, 337, 350
AluBI	AGCT	6 cut(s)	41, 110, 233, 479, 485, 601
AluI	AGCT	6 cut(s)	41, 110, 233, 479, 485, 601
Alw26I	GTCTC	4 cut(s)	475, 602, 718, 996
AlwI	GGATC	1 cut(s)	817
Aor13HI	TCCGGA	1 cut(s)	676
Aor51HI	AGCGCT	1 cut(s)	435
AoxI	GGCC	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	245, 317
ApoI	RAATTY	2 cut(s)	158, 376
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	360, 436
AspS9I	GGNCC	2 cut(s)	679, 956
AsuHPI	GGTGA	3 cut(s)	565, 715, 982
AvaII	GGWCC	2 cut(s)	679, 956
AxyI	CCTNAGG	1 cut(s)	966
BanII	GRGCYC	1 cut(s)	635
BbrPI	CACGTG	2 cut(s)	760, 793
BbvI	GCAGC	2 cut(s)	232, 304
BccI	CCATC	3 cut(s)	544, 671, 1046
BclI	TGATCA	2 cut(s)	273, 819
BcoDI	GTCTC	4 cut(s)	475, 602, 718, 996
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	508
BfoI	RGCGCY	1 cut(s)	437
BglII	AGATCT	1 cut(s)	1080
BisI	GCNGC	2 cut(s)	246, 318
BlsI	GCNGC	2 cut(s)	247, 319
Bme18I	GGWCC	2 cut(s)	679, 956
BmgT120I	GGNCC	2 cut(s)	679, 956
BmiI	GGNNCC	2 cut(s)	6, 990
BmrI	ACTGGG	1 cut(s)	793
BmsI	GCATC	4 cut(s)	232, 823, 828, 886
BmuI	ACTGGG	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	195
BsaAI	YACGTR	2 cut(s)	760, 793
BsaBI	GATNNNNATC	2 cut(s)	824, 842
BsaHI	GRCGYC	3 cut(s)	309, 711, 1005
BsaWI	WCCGGW	2 cut(s)	676, 799
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 676, 806
Bse1I	ACTGG	2 cut(s)	188, 788
Bse21I	CCTNAGG	1 cut(s)	966
Bse3DI	GCAATG	1 cut(s)	859
Bse8I	GATNNNNATC	2 cut(s)	824, 842
BseAI	TCCGGA	1 cut(s)	676
BseCI	ATCGAT	1 cut(s)	195
BseJI	GATNNNNATC	2 cut(s)	824, 842
BseLI	CCNNNNNNNGG	3 cut(s)	214, 676, 806
BseMI	GCAATG	1 cut(s)	859
BseMII	CTCAG	4 cut(s)	240, 469, 720, 957
BseNI	ACTGG	2 cut(s)	188, 788
BseRI	GAGGAG	1 cut(s)	571
BseXI	GCAGC	2 cut(s)	232, 304
BshFI	GGCC	1 cut(s)	499
BshVI	ATCGAT	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	677, 800
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	3 cut(s)	214, 676, 806
BsmAI	GTCTC	4 cut(s)	475, 602, 718, 996
BsmBI	CGTCTC	3 cut(s)	602, 718, 996
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp13I	TCCGGA	1 cut(s)	676
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	6 cut(s)	273, 744, 809, 819, 843, 1080
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	4 cut(s)	241, 468, 719, 958
BspDI	ATCGAT	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	676
BspHI	TCATGA	1 cut(s)	846
BspLI	GGNNCC	2 cut(s)	6, 990
BspMAI	CTGCAG	1 cut(s)	512
BspPI	GGATC	1 cut(s)	817
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	859
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	2 cut(s)	188, 788
BssMI	GATC	6 cut(s)	273, 744, 809, 819, 843, 1080
BssNI	GRCGYC	3 cut(s)	309, 711, 1005
Bst4CI	ACNGT	4 cut(s)	394, 492, 688, 1066
Bst6I	CTCTTC	4 cut(s)	117, 345, 467, 721
BstACI	GRCGYC	3 cut(s)	309, 711, 1005
BstAUI	TGTACA	1 cut(s)	861
BstBAI	YACGTR	2 cut(s)	760, 793
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	5 cut(s)	249, 455, 706, 886, 966
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	360, 436
BstKTI	GATC	6 cut(s)	276, 747, 812, 822, 846, 1083
BstMAI	GTCTC	4 cut(s)	475, 602, 718, 996
BstMBI	GATC	6 cut(s)	273, 744, 809, 819, 843, 1080
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	508
BstV1I	GCAGC	2 cut(s)	232, 304
BstX2I	RGATCY	2 cut(s)	809, 1080
BstXI	CCANNNNNNTGG	1 cut(s)	749
BstYI	RGATCY	2 cut(s)	809, 1080
Bsu15I	ATCGAT	1 cut(s)	195
Bsu36I	CCTNAGG	1 cut(s)	966
BsuRI	GGCC	1 cut(s)	499
BsuTUI	ATCGAT	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	851
Cac8I	GCNNGC	1 cut(s)	432
CciI	TCATGA	1 cut(s)	846
CfoI	GCGC	2 cut(s)	360, 436
Cfr13I	GGNCC	2 cut(s)	679, 956
ClaI	ATCGAT	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	529, 862, 1012
CviAII	CATG	2 cut(s)	281, 847
CviQI	GTAC	3 cut(s)	529, 862, 1012
DdeI	CTNAG	5 cut(s)	249, 455, 706, 886, 966
DpnI	GATC	6 cut(s)	275, 746, 811, 821, 845, 1082
DpnII	GATC	6 cut(s)	273, 744, 809, 819, 843, 1080
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	4 cut(s)	117, 345, 467, 721
EarI	CTCTTC	4 cut(s)	117, 345, 467, 721
Eco24I	GRGCYC	1 cut(s)	635
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	679, 956
Eco47III	AGCGCT	1 cut(s)	435
Eco57I	CTGAAG	6 cut(s)	63, 249, 495, 501, 759, 1021
Eco72I	CACGTG	2 cut(s)	760, 793
Eco81I	CCTNAGG	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	635
Esp3I	CGTCTC	3 cut(s)	602, 718, 996
FaeI	CATG	2 cut(s)	284, 850
FaiI	YATR	4 cut(s)	200, 282, 629, 848
FalI	AAGNNNNNCTT	2 cut(s)	1019, 1051
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	2 cut(s)	280, 846
FbaI	TGATCA	2 cut(s)	273, 819
FblI	GTMKAC	3 cut(s)	63, 386, 754
Fnu4HI	GCNGC	2 cut(s)	246, 318
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	2 cut(s)	246, 318
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	2 cut(s)	359, 435
GluI	GCNGC	2 cut(s)	246, 318
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	499
HapII	CCGG	2 cut(s)	677, 800
HhaI	GCGC	2 cut(s)	360, 436
Hin1I	GRCGYC	3 cut(s)	309, 711, 1005
Hin1II	CATG	2 cut(s)	284, 850
Hin6I	GCGC	2 cut(s)	358, 434
HinP1I	GCGC	2 cut(s)	358, 434
HincII	GTYRAC	3 cut(s)	166, 387, 646
HindII	GTYRAC	3 cut(s)	166, 387, 646
HpaII	CCGG	2 cut(s)	677, 800
HphI	GGTGA	3 cut(s)	565, 715, 982
Hpy166II	GTNNAC	8 cut(s)	64, 166, 366, 387, 646, 755, 790, 931
Hpy188I	TCNGA	6 cut(s)	94, 475, 709, 830, 1018, 1085
Hpy188III	TCNNGA	7 cut(s)	16, 116, 302, 566, 677, 847, 1039
Hpy8I	GTNNAC	8 cut(s)	64, 166, 366, 387, 646, 755, 790, 931
Hpy99I	CGWCG	2 cut(s)	391, 1070
HpyAV	CCTTC	1 cut(s)	1036
HpyCH4III	ACNGT	4 cut(s)	394, 492, 688, 1066
HpyCH4IV	ACGT	7 cut(s)	309, 521, 711, 759, 792, 1005, 1023
HpyCH4V	TGCA	4 cut(s)	425, 510, 841, 977
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	5 cut(s)	249, 455, 706, 886, 966
HpySE526I	ACGT	7 cut(s)	309, 521, 711, 759, 792, 1005, 1023
Hsp92I	GRCGYC	3 cut(s)	309, 711, 1005
Hsp92II	CATG	2 cut(s)	284, 850
HspAI	GCGC	2 cut(s)	358, 434
Kpn2I	TCCGGA	1 cut(s)	676
Ksp22I	TGATCA	2 cut(s)	273, 819
Kzo9I	GATC	6 cut(s)	273, 744, 809, 819, 843, 1080
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	10, 874
Lsp1109I	GCAGC	2 cut(s)	232, 304
LweI	GCATC	4 cut(s)	232, 823, 828, 886
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	7 cut(s)	309, 521, 711, 759, 792, 1005, 1023
MaeIII	GTNAC	2 cut(s)	46, 896
MalI	GATC	6 cut(s)	275, 746, 811, 821, 845, 1082
MboI	GATC	6 cut(s)	273, 744, 809, 819, 843, 1080
MboII	GAAGA	8 cut(s)	104, 152, 325, 362, 454, 559, 708, 1027
MflI	RGATCY	2 cut(s)	809, 1080
MhlI	GDGCHC	1 cut(s)	635
MluCI	AATT	3 cut(s)	26, 158, 376
MlyI	GAGTC	5 cut(s)	141, 231, 316, 651, 953
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	9 cut(s)	208, 429, 470, 549, 552, 807, 961, 969, 979
MroI	TCCGGA	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	4 cut(s)	81, 534, 594, 651
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	2 cut(s)	677, 800
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeII	GATC	6 cut(s)	273, 744, 809, 819, 843, 1080
NlaIII	CATG	2 cut(s)	284, 850
NlaIV	GGNNCC	2 cut(s)	6, 990
PagI	TCATGA	1 cut(s)	846
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	5 cut(s)	102, 583, 617, 637, 909
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	247, 319
PleI	GAGTC	5 cut(s)	141, 230, 316, 650, 952
PmaCI	CACGTG	2 cut(s)	760, 793
PmlI	CACGTG	2 cut(s)	760, 793
PpsI	GAGTC	5 cut(s)	141, 230, 316, 650, 952
Ppu21I	YACGTR	2 cut(s)	760, 793
Psp1406I	AACGTT	1 cut(s)	521
PspCI	CACGTG	2 cut(s)	760, 793
PspN4I	GGNNCC	2 cut(s)	6, 990
PspPI	GGNCC	2 cut(s)	679, 956
PstI	CTGCAG	1 cut(s)	512
PsuI	RGATCY	2 cut(s)	809, 1080
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	3 cut(s)	530, 863, 1013
RsaNI	GTAC	3 cut(s)	529, 862, 1012
SalI	GTCGAC	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	81, 534, 594, 651
SatI	GCNGC	2 cut(s)	246, 318
Sau3AI	GATC	6 cut(s)	273, 744, 809, 819, 843, 1080
Sau96I	GGNCC	2 cut(s)	679, 956
SchI	GAGTC	5 cut(s)	141, 231, 316, 651, 953
SduI	GDGCHC	1 cut(s)	635
SfaNI	GCATC	4 cut(s)	232, 823, 828, 886
SfcI	CTRYAG	1 cut(s)	508
SinI	GGWCC	2 cut(s)	679, 956
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	3 cut(s)	26, 158, 376
SspMI	CTAG	1 cut(s)	566
TaaI	ACNGT	4 cut(s)	394, 492, 688, 1066
TaiI	ACGT	7 cut(s)	312, 524, 714, 762, 795, 1008, 1026
TaqI	TCGA	6 cut(s)	195, 203, 386, 635, 640, 1068
TasI	AATT	3 cut(s)	26, 158, 376
TatI	WGTACW	3 cut(s)	528, 861, 1011
TfiI	GAWTC	5 cut(s)	102, 583, 617, 637, 909
Tru1I	TTAA	4 cut(s)	81, 534, 594, 651
Tru9I	TTAA	4 cut(s)	81, 534, 594, 651
TseI	GCWGC	2 cut(s)	245, 317
TspDTI	ATGAA	2 cut(s)	192, 531
TspGWI	ACGGA	1 cut(s)	996
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	679, 956
XapI	RAATTY	2 cut(s)	158, 376
XbaI	TCTAGA	1 cut(s)	565
XmiI	GTMKAC	3 cut(s)	63, 386, 754
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	566
ZraI	GACGTC	3 cut(s)	310, 712, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.