Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

26155813 .. 26156949

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028679

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCCCTCACCACCATCCAAGACACCCTAAGTTTGAATAAGAAGACGGGCCCAATGCAGATCAGGCCGAGCCCAACACCGCCTGGCCCAGTAGCTCGTTCCATTTCTAGTCAGGGACTCCGAGGAGCCGCCACTCCTTGCAGAGTGACTTGCCCCGACCTGGCACCGGCACCGATTTTCATTAGCTATCTCTCTCTCATTTTTTATTTACAGAGCCTCAAGTGTTCGGATAAGGCCGAGCAAGGAGAAGGAAACTGTGGGAGAGTCAGTATGTTATCCTGGACTGACGATGACTGGGGTTGTGGAGGTGCTGCTTCGATGGTGGTGTGGGGCGTGGGTCATGGGATGCTGGATCATGGTGACGAAGGTAGTGGCAGCATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

13.45

Weight (kDa)

5.5

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	163, 169
AciI	CCGC	2 cut(s)	80, 129
AclWI	GGATC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	160, 166
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	82, 159, 278
AluBI	AGCT	2 cut(s)	95, 186
AluI	AGCT	2 cut(s)	95, 186
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	4 cut(s)	49, 65, 85, 234
ApaI	GGGCCC	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	311, 375
AspS9I	GGNCC	3 cut(s)	49, 50, 86
AsuHPI	GGTGA	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	163, 169
BanII	GRGCYC	2 cut(s)	53, 74
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	23, 313
BciT130I	CCWGG	3 cut(s)	84, 161, 280
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	3 cut(s)	129, 312, 376
BlsI	GCNGC	3 cut(s)	130, 313, 377
Bme1390I	CCNGG	3 cut(s)	84, 161, 280
BmgT120I	GGNCC	3 cut(s)	49, 50, 86
BmiI	GGNNCC	4 cut(s)	51, 127, 165, 171
BmrFI	CCNGG	3 cut(s)	84, 161, 280
BmrI	ACTGGG	2 cut(s)	83, 304
BmsI	GCATC	1 cut(s)	336
BmuI	ACTGGG	2 cut(s)	83, 304
BpiI	GAAGAC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 166
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	2 cut(s)	89, 299
BseBI	CCWGG	3 cut(s)	84, 161, 280
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	15, 351
BseLI	CCNNNNNNNGG	2 cut(s)	160, 166
BseNI	ACTGG	2 cut(s)	89, 299
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	4 cut(s)	51, 67, 87, 236
BshNI	GGYRCC	2 cut(s)	163, 169
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	160, 166
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	4 cut(s)	51, 67, 87, 236
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	53, 74
Bsp143I	GATC	2 cut(s)	60, 352
BspACI	CCGC	2 cut(s)	80, 129
BspANI	GGCC	4 cut(s)	51, 67, 87, 236
BspLI	GGNNCC	4 cut(s)	51, 127, 165, 171
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	2 cut(s)	163, 169
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	89, 299
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	60, 352
Bst2UI	CCWGG	3 cut(s)	84, 161, 280
Bst4CI	ACNGT	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	15, 351
BstKTI	GATC	2 cut(s)	63, 355
BstMBI	GATC	2 cut(s)	60, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	3 cut(s)	84, 161, 280
BstSCI	CCNGG	3 cut(s)	82, 159, 278
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	50
BsuRI	GGCC	4 cut(s)	51, 67, 87, 236
BtsCI	GGATG	2 cut(s)	15, 351
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	3 cut(s)	49, 50, 86
CviAII	CATG	3 cut(s)	341, 356, 379
CviJI	RGCY	9 cut(s)	51, 67, 72, 87, 95, 128, 186, 216, 236
CviKI_1	RGCY	9 cut(s)	51, 67, 72, 87, 95, 128, 186, 216, 236
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	2 cut(s)	62, 354
DpnII	GATC	2 cut(s)	60, 352
Eco24I	GRGCYC	2 cut(s)	53, 74
EcoRII	CCWGG	3 cut(s)	82, 159, 278
EcoT38I	GRGCYC	2 cut(s)	53, 74
FaeI	CATG	3 cut(s)	344, 359, 382
FaiI	YATR	4 cut(s)	272, 342, 357, 380
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	3 cut(s)	340, 355, 378
Fnu4HI	GCNGC	3 cut(s)	129, 312, 376
FokI	GGATG	2 cut(s)	2, 358
FriOI	GRGCYC	2 cut(s)	53, 74
Fsp4HI	GCNGC	3 cut(s)	129, 312, 376
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	3 cut(s)	129, 312, 376
HaeIII	GGCC	4 cut(s)	51, 67, 87, 236
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	3 cut(s)	344, 359, 382
HinfI	GANTC	2 cut(s)	117, 264
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	122, 229
HpyAV	CCTTC	2 cut(s)	242, 359
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	2 cut(s)	58, 141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	344, 359, 382
Kzo9I	GATC	2 cut(s)	60, 352
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	145, 359
MalI	GATC	2 cut(s)	62, 354
MboI	GATC	2 cut(s)	60, 352
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	53, 74
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	2 cut(s)	111, 273
MnlI	CCTC	4 cut(s)	17, 116, 227, 299
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	3 cut(s)	84, 161, 280
MvaI	CCWGG	3 cut(s)	84, 161, 280
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	2 cut(s)	60, 352
NlaIII	CATG	3 cut(s)	344, 359, 382
NlaIV	GGNNCC	4 cut(s)	51, 127, 165, 171
NmeAIII	GCCGAG	2 cut(s)	93, 262
NmuCI	GTSAC	2 cut(s)	145, 359
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	130, 313, 377
PleI	GAGTC	2 cut(s)	111, 272
PpsI	GAGTC	2 cut(s)	111, 272
Psp6I	CCWGG	3 cut(s)	82, 159, 278
PspGI	CCWGG	3 cut(s)	82, 159, 278
PspN4I	GGNNCC	4 cut(s)	51, 127, 165, 171
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	3 cut(s)	49, 50, 86
SatI	GCNGC	3 cut(s)	129, 312, 376
Sau3AI	GATC	2 cut(s)	60, 352
Sau96I	GGNCC	3 cut(s)	49, 50, 86
SchI	GAGTC	2 cut(s)	111, 273
ScrFI	CCNGG	3 cut(s)	84, 161, 280
SduI	GDGCHC	2 cut(s)	53, 74
SetI	ASST	5 cut(s)	97, 162, 188, 310, 370
SfaNI	GCATC	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	2 cut(s)	80, 129
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	3 cut(s)	82, 159, 278
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	382
TauI	GCSGC	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	145, 359
TseI	GCWGC	2 cut(s)	311, 375
Tsp45I	GTSAC	2 cut(s)	145, 359
TspDTI	ATGAA	1 cut(s)	169
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.