Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Forward (+)

37615242 .. 37616932

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCACCATCTTTAAGCCAAACCATCACAGACCCTTCAGATCTCACTGACTTTGTCATTAACAAAGGCAATGGGGTAAAGGGTCTTTCCCAAATGGGACTCAAAAGCCTCCCAAAGCAATATATCCAACCCGTTGCAGAAAGAATGAGTATGAATATAGCAAAAATGTCTGAAGAATCCATTCCCATCATTGACATGTCAAACTGGGAGGACCCGAAAGTGACGGAATCAATTTGCAATGCGGCAGAGAAGTGGGGATTCTTTCAAATACTCAACCATGGTGTCCCCATTGAAGTTCTTGAGCATGTCAAGGAAGCAACTCACAAGTTTTTTGAGTTGCCAGCTGAGGAGAAGTGTAAGTTCTCGAAAGAGTATTCGCCTTCAAACAATGTCCGGTTTGGTACAAGCTTTAGTCCTGAAGCAGAGAAGGCACTAGAATGGAAAGACTGGCTTAGTCTCTTCTATGTTTCTGAGGATGAAGCCTCTGCACACTGGCCTCCAGCTTGCAAGGCTGAAGTGCTCGAGTACATGAAGAGGACAGACATACTCATAAAACGACTCCTAGATATACTGATGAAAAGACTCAATGTGACAGAAATAGACAAAACAAACGAAGCACTTCTAATGGGATCCAAGAGAATTAACCTCAACTATTACCCCGTTTGTCCAAACCCTGAGCTCACCGTCGGAGTTGGGCGTCACTCTGATGTGTCCACACTCACAGTCCTCCTTCAAGACTACATCGGAGGGCTCTACGTCCGAGCTGGGACTACTACTGATGAAGATAGCTGGGTGCATGTTCCTCCATTGGAAGGGTCATTAGTGATCAACATTGGTGATGCTTTGCAGATAATGAGCAATGGAAAATACAAGAGCGTTGAGCATAGAGTGGTTGCCAATGGAAGTAAGACAAGGATTTCGGTTCCCATATTTGTGAATCCGAGGCCATCGGACGTGATAGGGCCTCTGCCTGAAGTGCTTGGGAGTAGTGGGGAGAAAGCATTGTATAAGCAGGTTCTGTATTCTGACTATGTCAAGCATTTCTTCCGTAAGGCTCATGATGGAAAGAGTACAGTCGATTTTGCCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

365

Amino Acids

40.82

Weight (kDa)

5.91

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 165	4.3e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 314	7.5e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1003
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	624, 637
AcsI	RAATTY	1 cut(s)	1088
AcuI	CTGAAG	5 cut(s)	21, 192, 438, 534, 993
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	3 cut(s)	403, 527, 1072
AfiI	CCNNNNNNNGG	1 cut(s)	812
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	266, 293, 384, 734
AjiI	CACGTC	1 cut(s)	955
AluBI	AGCT	6 cut(s)	344, 408, 503, 679, 764, 789
AluI	AGCT	6 cut(s)	344, 408, 503, 679, 764, 789
Alw21I	GWGCWC	2 cut(s)	522, 681
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	624, 637
AlwNI	CAGNNNCTG	1 cut(s)	1018
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	3 cut(s)	494, 944, 962
ApoI	RAATTY	1 cut(s)	1088
ArsI	GACNNNNNNTTYG	2 cut(s)	901, 933
Asp700I	GAANNNNTTC	2 cut(s)	180, 618
AspS9I	GGNCC	2 cut(s)	211, 962
AsuHPI	GGTGA	2 cut(s)	673, 848
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	681, 753
Bbv12I	GWGCWC	2 cut(s)	522, 681
BbvCI	CCTCAGC	1 cut(s)	345
BccI	CCATC	5 cut(s)	16, 32, 194, 955, 1055
BclI	TGATCA	1 cut(s)	825
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	2 cut(s)	434, 563
BfuAI	ACCTGC	1 cut(s)	1003
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	521
BmgBI	CACGTC	1 cut(s)	955
BmgT120I	GGNCC	2 cut(s)	211, 962
BmiI	GGNNCC	4 cut(s)	6, 213, 631, 924
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	829
BmuI	ACTGGG	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	483
Bpu10I	CCTNAGC	2 cut(s)	345, 675
BpuEI	CTTGAG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	277, 941
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	1 cut(s)	812
Bse1I	ACTGG	3 cut(s)	209, 452, 497
Bse3DI	GCAATG	3 cut(s)	76, 244, 865
BseDI	CCNNGG	2 cut(s)	277, 941
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	812
BseMI	GCAATG	3 cut(s)	76, 244, 865
BseMII	CTCAG	3 cut(s)	336, 462, 666
BseNI	ACTGG	3 cut(s)	209, 452, 497
BseRI	GAGGAG	1 cut(s)	362
BseYI	CCCAGC	2 cut(s)	764, 789
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	3 cut(s)	496, 946, 964
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	522, 681
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	3 cut(s)	111, 269, 781
BslI	CCNNNNNNNGG	1 cut(s)	812
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	3 cut(s)	111, 269, 781
BsnI	GGCC	3 cut(s)	496, 946, 964
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	522, 681, 753
Bsp143I	GATC	3 cut(s)	40, 629, 825
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	3 cut(s)	496, 946, 964
BspCNI	CTCAG	3 cut(s)	337, 463, 667
BspHI	TCATGA	1 cut(s)	1057
BspLI	GGNNCC	4 cut(s)	6, 213, 631, 924
BspMI	ACCTGC	1 cut(s)	1003
BspPI	GGATC	2 cut(s)	624, 637
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	3 cut(s)	76, 244, 865
BsrI	ACTGG	3 cut(s)	209, 452, 497
BssECI	CCNNGG	2 cut(s)	277, 941
BssMI	GATC	3 cut(s)	40, 629, 825
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	685, 724, 1075
Bst6I	CTCTTC	2 cut(s)	464, 527
BstACI	GRCGYC	1 cut(s)	697
BstC8I	GCNNGC	2 cut(s)	342, 505
BstDEI	CTNAG	4 cut(s)	345, 452, 471, 675
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	3 cut(s)	43, 632, 828
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	3 cut(s)	40, 629, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 509, 976
BstNSI	RCATGY	3 cut(s)	199, 308, 800
BstX2I	RGATCY	2 cut(s)	40, 629
BstYI	RGATCY	2 cut(s)	40, 629
BsuRI	GGCC	3 cut(s)	496, 946, 964
BtgI	CCRYGG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	45, 490
BveI	ACCTGC	1 cut(s)	1003
Cac8I	GCNNGC	2 cut(s)	342, 505
CaiI	CAGNNNCTG	1 cut(s)	1018
CciI	TCATGA	1 cut(s)	1057
Cfr13I	GGNCC	2 cut(s)	211, 962
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	402, 526, 1071
CviAII	CATG	6 cut(s)	196, 278, 305, 529, 797, 1058
CviQI	GTAC	3 cut(s)	402, 526, 1071
DdeI	CTNAG	4 cut(s)	345, 452, 471, 675
DpnI	GATC	3 cut(s)	42, 631, 827
DpnII	GATC	3 cut(s)	40, 629, 825
Eam1104I	CTCTTC	2 cut(s)	464, 527
EarI	CTCTTC	2 cut(s)	464, 527
Ecl136II	GAGCTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	2 cut(s)	681, 753
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	5 cut(s)	21, 192, 438, 534, 993
Eco88I	CYCGRG	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	679
EcoO109I	RGGNCCY	2 cut(s)	211, 962
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	2 cut(s)	681, 753
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	6 cut(s)	199, 281, 308, 532, 800, 1061
FalI	AAGNNNNNCTT	4 cut(s)	435, 467, 1028, 1060
FaqI	GGGAC	3 cut(s)	111, 269, 781
FatI	CATG	6 cut(s)	195, 277, 304, 528, 796, 1057
FbaI	TGATCA	1 cut(s)	825
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	2 cut(s)	681, 753
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	434, 563
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	2 cut(s)	768, 793
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	3 cut(s)	496, 946, 964
HapII	CCGG	1 cut(s)	394
HgaI	GACGC	1 cut(s)	686
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	6 cut(s)	199, 281, 308, 532, 800, 1061
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	7 cut(s)	99, 176, 227, 258, 558, 582, 937
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	2 cut(s)	673, 848
Hpy166II	GTNNAC	1 cut(s)	714
Hpy188III	TCNNGA	5 cut(s)	299, 364, 416, 734, 1058
Hpy8I	GTNNAC	1 cut(s)	714
Hpy99I	CGWCG	1 cut(s)	689
HpyAV	CCTTC	5 cut(s)	45, 390, 421, 740, 806
HpyCH4III	ACNGT	3 cut(s)	685, 724, 1075
HpyCH4IV	ACGT	2 cut(s)	756, 954
HpyCH4V	TGCA	6 cut(s)	137, 237, 488, 507, 796, 847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 509, 976
HpyF3I	CTNAG	4 cut(s)	345, 452, 471, 675
HpySE526I	ACGT	2 cut(s)	756, 954
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	6 cut(s)	199, 281, 308, 532, 800, 1061
Ksp22I	TGATCA	1 cut(s)	825
Kzo9I	GATC	3 cut(s)	40, 629, 825
LweI	GCATC	1 cut(s)	829
MaeI	CTAG	2 cut(s)	434, 563
MaeII	ACGT	2 cut(s)	756, 954
MaeIII	GTNAC	3 cut(s)	220, 589, 698
MalI	GATC	3 cut(s)	42, 631, 827
MboI	GATC	3 cut(s)	40, 629, 825
MboII	GAAGA	5 cut(s)	185, 451, 544, 794, 1036
MflI	RGATCY	2 cut(s)	40, 629
MhlI	GDGCHC	3 cut(s)	522, 681, 753
MluCI	AATT	3 cut(s)	231, 639, 1088
MlyI	GAGTC	3 cut(s)	93, 552, 576
MmeI	TCCRAC	2 cut(s)	151, 667
MroXI	GAANNNNTTC	2 cut(s)	180, 618
MseI	TTAA	3 cut(s)	14, 60, 642
MslI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 932
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	3 cut(s)	428, 509, 976
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	3 cut(s)	40, 629, 825
NlaIII	CATG	6 cut(s)	199, 281, 308, 532, 800, 1061
NlaIV	GGNNCC	4 cut(s)	6, 213, 631, 924
NmuCI	GTSAC	3 cut(s)	220, 589, 698
NspI	RCATGY	3 cut(s)	199, 308, 800
PaeR7I	CTCGAG	1 cut(s)	521
PagI	TCATGA	1 cut(s)	1057
PciI	ACATGT	1 cut(s)	195
PdmI	GAANNNNTTC	2 cut(s)	180, 618
PfeI	GAWTC	4 cut(s)	176, 227, 258, 937
PflFI	GACNNNGTC	2 cut(s)	53, 1031
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	3 cut(s)	93, 552, 576
PpsI	GAGTC	3 cut(s)	93, 552, 576
PpuMI	RGGWCCY	1 cut(s)	211
PscI	ACATGT	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	211
PspFI	CCCAGC	2 cut(s)	764, 789
PspN4I	GGNNCC	4 cut(s)	6, 213, 631, 924
PspPI	GGNCC	2 cut(s)	211, 962
PspPPI	RGGWCCY	1 cut(s)	211
PspXI	VCTCGAGB	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	1018
PsuI	RGATCY	2 cut(s)	40, 629
PsyI	GACNNNGTC	2 cut(s)	53, 1031
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	3 cut(s)	403, 527, 1072
RsaNI	GTAC	3 cut(s)	402, 526, 1071
RseI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 932
SacI	GAGCTC	1 cut(s)	681
SaqAI	TTAA	3 cut(s)	14, 60, 642
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	40, 629, 825
Sau96I	GGNCC	2 cut(s)	211, 962
SchI	GAGTC	3 cut(s)	93, 552, 576
SduI	GDGCHC	3 cut(s)	522, 681, 753
SfaNI	GCATC	1 cut(s)	829
Sfr274I	CTCGAG	1 cut(s)	521
SinI	GGWCC	1 cut(s)	211
SlaI	CTCGAG	1 cut(s)	521
SmiMI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 932
SmlI	CTYRAG	2 cut(s)	299, 521
SmoI	CTYRAG	2 cut(s)	299, 521
Sse9I	AATT	3 cut(s)	231, 639, 1088
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	434, 563
SstI	GAGCTC	1 cut(s)	681
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	685, 724, 1075
TaiI	ACGT	2 cut(s)	759, 957
TaqI	TCGA	3 cut(s)	365, 522, 1077
TasI	AATT	3 cut(s)	231, 639, 1088
TatI	WGTACW	2 cut(s)	525, 1070
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	4 cut(s)	176, 227, 258, 937
Tru1I	TTAA	3 cut(s)	14, 60, 642
Tru9I	TTAA	3 cut(s)	14, 60, 642
TscAI	CASTG	2 cut(s)	52, 497
TseFI	GTSAC	3 cut(s)	220, 589, 698
Tsp45I	GTSAC	3 cut(s)	220, 589, 698
TspDTI	ATGAA	5 cut(s)	167, 492, 545, 590, 795
TspGWI	ACGGA	2 cut(s)	239, 1037
TspRI	CASTG	2 cut(s)	52, 497
Tth111I	GACNNNGTC	2 cut(s)	53, 1031
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	1088
XceI	RCATGY	3 cut(s)	199, 308, 800
XhoI	CTCGAG	1 cut(s)	521
XmnI	GAANNNNTTC	2 cut(s)	180, 618
XspI	CTAG	2 cut(s)	434, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.