MD15G1313900.v1.1

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
31739867 .. 31741372
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1313900.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGATCCACCTGTGGCACAAACCATCACCGACCCTTCAAGCGTCACTGATTTTGTTATAAGCAAAAGTCATGGAGTAAAGGGTCTTTCAGAAATGGGACTAAAAGCCCTCCCCAAGCAATATATCCAACCCCTTGAAGAAAGAATTACTACTATGAATGTTGTGGCCACAACAAACCCTGGAGAGTACATTCCCATCATCGACATGTCTAACTCCGATGACCCAAAAGTTGCAGAAGCAATTTGCAATGCAGCGGAGAAGTGGGGGTTCTTTCAACTAGTGAATCATGGGGTGCCAATTGAAGAGCTTGAGAATGTGATGGAAGCAACTCATCGCTTCTTCGAGTTGCCAGCCGAGAAGAAGACTAAGTATTCGGTTGAGCATTCGGCCTCAAAAAATGTGCGGTTTGGAACGAGCTTTAGTCCTCATGCAGAGAAGGCTTTGGAGTGGAAAGATTGGCTTAGTCTATTCTATGTGTCCGAGGATGAGGCCTCTGCATTCTGGCCTCCTGCATGCAAGGCTGAAGTGCTGGAATACATGAAGAAGACCGACATTCTTACAAAACAAATCCTAGAAATGCTAATGAAAAGACTAAACGTGGAAGAACTTGACCAAGAAAAGGAACATCTTCTAATGGGATCCAAGCGGATTAACCTTAACTACTACCCGGTGTGTCCAAACCCTGAGCTCACGGTTGGAGTCGGCCGTCACTCCGATGTCTCAACACTCACAATTCTCCTCCAAGACCACATCGGTGGACTTTACGTCCGCGGAACCGATAAGGAGAGCTGGGTTCATGTTCCGCCAGTGAAGGGGTCGTTGGTGATCAACATCGGCGATGCACTGCAAATAATGAGCAACGGACGATACAAGAGCATCGAGCATCGAGTCGCAGCCAATGGATGTAAGAACAGGATTTCGGTTCCCATTTTTGTCAACCCAAGGCCGTCGGATTTGATCGCTCCGCTGCCGGAAGTTCTTGCAAGTGGGGAGAAAGCAGTGTATAAACAAGTTCTCTACTCTGACTATGTCAGACATTTCTTCCGCAAGGCTCATGATGGGAAGGGTACAATTGACTTTGCCAAAGCATGA

Protein Analysis

364

Amino Acids

40.7

Weight (kDa)

6.08

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 64 - 168 1.5e-25 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 218 - 314 4.6e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 292
AccII CGCG 1 cut(s) 771
AciI CCGC 8 cut(s) 254, 403, 646, 769, 771, 803, 965, 1045
AclWI GGATC 3 cut(s) 12, 633, 646
AcoI YGGCCR 2 cut(s) 165, 703
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 2 cut(s) 188, 1069
AfiI CCNNNNNNNGG 2 cut(s) 619, 812
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 4 cut(s) 39, 137, 275, 302
AhdI GACNNNNNGTC 1 cut(s) 764
AhlI ACTAGT 1 cut(s) 277
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 803, 835
AleI CACNNNNGTG 1 cut(s) 753
AluBI AGCT 4 cut(s) 307, 417, 688, 789
AluI AGCT 4 cut(s) 307, 417, 688, 789
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 1 cut(s) 724
AlwI GGATC 3 cut(s) 12, 633, 646
AoxI GGCC 6 cut(s) 165, 387, 489, 503, 703, 944
ApeKI GCWGC 3 cut(s) 251, 893, 967
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
Asp700I GAANNNNTTC 1 cut(s) 627
AsuC2I CCSGG 1 cut(s) 668
AsuHPI GGTGA 2 cut(s) 19, 835
BalI TGGCCA 1 cut(s) 167
BamHI GGATCC 2 cut(s) 4, 638
BanI GGYRCC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 690
BbsI GAAGAC 2 cut(s) 368, 551
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 3 cut(s) 263, 905, 954
BccI CCATC 4 cut(s) 32, 203, 313, 1052
BceAI ACGGC 2 cut(s) 690, 931
BciT130I CCWGG 1 cut(s) 180
BclI TGATCA 1 cut(s) 825
BcnI CCSGG 1 cut(s) 668
BcoDI GTCTC 1 cut(s) 724
BcuI ACTAGT 1 cut(s) 277
BfaI CTAG 2 cut(s) 278, 572
BisI GCNGC 3 cut(s) 252, 894, 968
BlsI GCNGC 3 cut(s) 253, 895, 969
Bme1390I CCNGG 2 cut(s) 180, 668
BmeRI GACNNNNNGTC 1 cut(s) 764
BmiI GGNNCC 5 cut(s) 6, 294, 640, 775, 924
BmrFI CCNGG 2 cut(s) 180, 668
BmsI GCATC 3 cut(s) 829, 885, 892
BpiI GAAGAC 2 cut(s) 368, 551
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 668
BsaBI GATNNNNATC 1 cut(s) 830
BsaJI CCNNGG 4 cut(s) 178, 480, 769, 941
Bsc4I CCNNNNNNNGG 2 cut(s) 619, 812
Bse1I ACTGG 1 cut(s) 806
Bse3DI GCAATG 1 cut(s) 253
Bse8I GATNNNNATC 1 cut(s) 830
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 4 cut(s) 178, 480, 769, 941
BseGI GGATG 2 cut(s) 490, 908
BseJI GATNNNNATC 1 cut(s) 830
BseLI CCNNNNNNNGG 2 cut(s) 619, 812
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 1 cut(s) 806
BseRI GAGGAG 1 cut(s) 728
BseX3I CGGCCG 1 cut(s) 703
BseXI GCAGC 3 cut(s) 263, 905, 954
BseYI CCCAGC 1 cut(s) 789
Bsh1236I CGCG 1 cut(s) 771
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 6 cut(s) 167, 389, 491, 505, 705, 946
BshNI GGYRCC 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 690
BsiSI CCGG 2 cut(s) 668, 971
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 619, 812
BsmAI GTCTC 1 cut(s) 724
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 2 cut(s) 382, 497
BsnI GGCC 6 cut(s) 167, 389, 491, 505, 705, 946
Bsp1286I GDGCHC 1 cut(s) 690
Bsp143I GATC 4 cut(s) 4, 638, 825, 957
BspACI CCGC 8 cut(s) 254, 403, 646, 769, 771, 803, 965, 1045
BspANI GGCC 6 cut(s) 167, 389, 491, 505, 705, 946
BspCNI CTCAG 1 cut(s) 676
BspFNI CGCG 1 cut(s) 771
BspHI TCATGA 1 cut(s) 1054
BspLI GGNNCC 5 cut(s) 6, 294, 640, 775, 924
BspPI GGATC 3 cut(s) 12, 633, 646
BspQI GCTCTTC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 253
BsrI ACTGG 1 cut(s) 806
BssECI CCNNGG 4 cut(s) 178, 480, 769, 941
BssMI GATC 4 cut(s) 4, 638, 825, 957
BssT1I CCWWGG 1 cut(s) 941
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 351, 514
BstDEI CTNAG 3 cut(s) 366, 461, 684
BstDSI CCRYGG 1 cut(s) 769
BstF5I GGATG 2 cut(s) 490, 908
BstFNI CGCG 1 cut(s) 771
BstKTI GATC 4 cut(s) 7, 641, 828, 960
BstMAI GTCTC 1 cut(s) 724
BstMBI GATC 4 cut(s) 4, 638, 825, 957
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 2 cut(s) 437, 518
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 2 cut(s) 208, 516
BstSCI CCNGG 2 cut(s) 178, 666
BstUI CGCG 1 cut(s) 771
BstV1I GCAGC 3 cut(s) 263, 905, 954
BstV2I GAAGAC 2 cut(s) 368, 551
BstX2I RGATCY 2 cut(s) 4, 638
BstXI CCANNNNNNTGG 1 cut(s) 755
BstYI RGATCY 2 cut(s) 4, 638
BstZI CGGCCG 1 cut(s) 703
BsuRI GGCC 6 cut(s) 167, 389, 491, 505, 705, 946
BtgI CCRYGG 1 cut(s) 769
BtgZI GCGATG 2 cut(s) 317, 852
BtsCI GGATG 2 cut(s) 490, 908
BtsI GCAGTG 2 cut(s) 842, 1005
BtsIMutI CAGTG 4 cut(s) 45, 813, 842, 1005
Cac8I GCNNGC 2 cut(s) 351, 514
CciI TCATGA 1 cut(s) 1054
Cfr42I CCGCGG 1 cut(s) 772
CseI GACGC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 187, 1068
CviAII CATG 9 cut(s) 71, 205, 287, 428, 513, 538, 797, 1055, 1089
CviQI GTAC 2 cut(s) 187, 1068
DdeI CTNAG 3 cut(s) 366, 461, 684
DpnI GATC 4 cut(s) 6, 640, 827, 959
DpnII GATC 4 cut(s) 4, 638, 825, 957
DriI GACNNNNNGTC 1 cut(s) 764
EaeI YGGCCR 2 cut(s) 165, 703
EagI CGGCCG 1 cut(s) 703
Eam1104I CTCTTC 1 cut(s) 297
Eam1105I GACNNNNNGTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 297
EciI GGCGGA 1 cut(s) 792
Ecl136II GAGCTC 1 cut(s) 688
EclXI CGGCCG 1 cut(s) 703
Eco130I CCWWGG 1 cut(s) 941
Eco147I AGGCCT 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 690
Eco52I CGGCCG 1 cut(s) 703
Eco53kI GAGCTC 1 cut(s) 688
Eco57I CTGAAG 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 941
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 9 cut(s) 74, 208, 290, 431, 516, 541, 800, 1058, 1092
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 111
FatI CATG 9 cut(s) 70, 204, 286, 427, 512, 537, 796, 1054, 1088
FbaI TGATCA 1 cut(s) 825
Fnu4HI GCNGC 3 cut(s) 252, 894, 968
FokI GGATG 2 cut(s) 497, 915
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 3 cut(s) 252, 894, 968
FspBI CTAG 2 cut(s) 278, 572
GluI GCNGC 3 cut(s) 252, 894, 968
GsaI CCCAGC 1 cut(s) 793
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 6 cut(s) 167, 389, 491, 505, 705, 946
HapII CCGG 2 cut(s) 668, 971
HgaI GACGC 1 cut(s) 31
Hin1II CATG 9 cut(s) 74, 208, 290, 431, 516, 541, 800, 1058, 1092
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HinfI GANTC 3 cut(s) 283, 699, 888
HpaII CCGG 2 cut(s) 668, 971
HphI GGTGA 2 cut(s) 19, 835
Hpy166II GTNNAC 2 cut(s) 758, 937
Hpy188I TCNGA 7 cut(s) 91, 217, 481, 715, 952, 1024, 1034
Hpy188III TCNNGA 1 cut(s) 1055
Hpy8I GTNNAC 2 cut(s) 758, 937
Hpy99I CGWCG 1 cut(s) 952
HpyAV CCTTC 4 cut(s) 45, 430, 805, 1057
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 2 cut(s) 597, 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 518
HpyF3I CTNAG 3 cut(s) 366, 461, 684
HpySE526I ACGT 2 cut(s) 597, 765
Hsp92II CATG 9 cut(s) 74, 208, 290, 431, 516, 541, 800, 1058, 1092
Ksp22I TGATCA 1 cut(s) 825
KspI CCGCGG 1 cut(s) 772
Kzo9I GATC 4 cut(s) 4, 638, 825, 957
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 967
Lsp1109I GCAGC 3 cut(s) 263, 905, 954
LweI GCATC 3 cut(s) 829, 885, 892
MaeI CTAG 2 cut(s) 278, 572
MaeII ACGT 2 cut(s) 597, 765
MaeIII GTNAC 2 cut(s) 43, 707
MalI GATC 4 cut(s) 6, 640, 827, 959
MboI GATC 4 cut(s) 4, 638, 825, 957
MfeI CAATTG 2 cut(s) 297, 1071
MflI RGATCY 2 cut(s) 4, 638
MhlI GDGCHC 1 cut(s) 690
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 5 cut(s) 144, 240, 297, 732, 1071
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 2 cut(s) 708, 897
MmeI TCCRAC 3 cut(s) 151, 676, 930
MnlI CCTC 8 cut(s) 119, 400, 435, 475, 481, 502, 516, 749
Mox20I TGGCCA 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 627
MscI TGGCCA 1 cut(s) 167
MseI TTAA 2 cut(s) 651, 657
MslI CAYNNNNRTG 3 cut(s) 203, 714, 753
Msp20I TGGCCA 1 cut(s) 167
MspA1I CMGCKG 3 cut(s) 254, 771, 967
MspI CCGG 2 cut(s) 668, 971
MspR9I CCNGG 2 cut(s) 180, 668
MunI CAATTG 2 cut(s) 297, 1071
Mva1269I GAATGC 2 cut(s) 382, 497
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 771
MwoI GCNNNNNNNGC 2 cut(s) 437, 518
NciI CCSGG 1 cut(s) 668
NdeII GATC 4 cut(s) 4, 638, 825, 957
NlaIII CATG 9 cut(s) 74, 208, 290, 431, 516, 541, 800, 1058, 1092
NlaIV GGNNCC 5 cut(s) 6, 294, 640, 775, 924
NmeAIII GCCGAG 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 43, 707
NspI RCATGY 2 cut(s) 208, 516
OliI CACNNNNGTG 1 cut(s) 753
PaeI GCATGC 1 cut(s) 516
PagI TCATGA 1 cut(s) 1054
PceI AGGCCT 1 cut(s) 491
PciI ACATGT 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 2 cut(s) 382, 497
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 1 cut(s) 283
PflFI GACNNNGTC 1 cut(s) 1028
PkrI GCNGC 3 cut(s) 253, 895, 969
PleI GAGTC 2 cut(s) 707, 896
PpsI GAGTC 2 cut(s) 707, 896
PscI ACATGT 1 cut(s) 204
PsiI TTATAA 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 690
Psp6I CCWGG 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 789
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 5 cut(s) 6, 294, 640, 775, 924
PsuI RGATCY 2 cut(s) 4, 638
PsyI GACNNNGTC 1 cut(s) 1028
RsaI GTAC 2 cut(s) 188, 1069
RsaNI GTAC 2 cut(s) 187, 1068
RseI CAYNNNNRTG 3 cut(s) 203, 714, 753
SacI GAGCTC 1 cut(s) 690
SacII CCGCGG 1 cut(s) 772
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 651, 657
SatI GCNGC 3 cut(s) 252, 894, 968
Sau3AI GATC 4 cut(s) 4, 638, 825, 957
SchI GAGTC 2 cut(s) 708, 897
ScrFI CCNGG 2 cut(s) 180, 668
SduI GDGCHC 1 cut(s) 690
SetI ASST 8 cut(s) 13, 309, 419, 600, 657, 690, 768, 791
SfaNI GCATC 3 cut(s) 829, 885, 892
Sfr303I CCGCGG 1 cut(s) 772
SgrBI CCGCGG 1 cut(s) 772
SmiMI CAYNNNNRTG 3 cut(s) 203, 714, 753
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SpeI ACTAGT 1 cut(s) 277
SphI GCATGC 1 cut(s) 516
Sse9I AATT 5 cut(s) 144, 240, 297, 732, 1071
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 8 cut(s) 254, 403, 646, 769, 771, 803, 965, 1045
SspMI CTAG 2 cut(s) 278, 572
SstI GAGCTC 1 cut(s) 690
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 2 cut(s) 178, 666
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 2 cut(s) 600, 768
TaqI TCGA 4 cut(s) 201, 342, 879, 886
TaqII GACCGA 1 cut(s) 563
TasI AATT 5 cut(s) 144, 240, 297, 732, 1071
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 2 cut(s) 651, 657
Tru9I TTAA 2 cut(s) 651, 657
TscAI CASTG 4 cut(s) 52, 813, 849, 1005
TseFI GTSAC 2 cut(s) 43, 707
TseI GCWGC 3 cut(s) 251, 893, 967
Tsp45I GTSAC 2 cut(s) 43, 707
TspDTI ATGAA 4 cut(s) 170, 554, 599, 785
TspGWI ACGGA 1 cut(s) 876
TspRI CASTG 4 cut(s) 52, 813, 849, 1005
Tth111I GACNNNGTC 1 cut(s) 1028
XceI RCATGY 2 cut(s) 208, 516
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 2 cut(s) 278, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.