Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Forward (+)

88795935 .. 88796354

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGACTCAAAAGCCTCCCAAAGCAATATATCCAACCCCTTGAAGAAAGAATGAGTATGAATATGACAAAAATGCCTGAAGAATCCATTCCCATCATTCACGTGTCAAACTGGGAGGACCCGAAAGTGGCAGAATCAATTTGCAATGCGGCAGAGAAGTGGGGGTTCTTTCAACTACTCAACCATGGTGTGCCCACTGAAGTTCTTGAGCATGTCAAGGAAGCAACTCACAGGTTCTTTGAGATGCCAGCTGAGGAGAAGTGTAAGTTCTCGAAAGAGCATTCGCCTTCAACCAATGTCCGCTTTGGGACAAGCTTTAGTCCTGAAGCAGAGACGGCACTGGAGTGGAAAGACTGGCTTAGTCTCTTCTATGTTTCTGAGGATGAGGCCTCTGCACACTGGCCTCCAGTTTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

139

Amino Acids

16.06

Weight (kDa)

5.23

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	30 - 132	1.3e-22	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 301
AcuI	CTGAAG	3 cut(s)	99, 219, 345
AcvI	CACGTG	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	44, 173, 291
AleI	CACNNNNGTG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	251, 315
AluI	AGCT	2 cut(s)	251, 315
Alw26I	GTCTC	2 cut(s)	326, 368
AoxI	GGCC	2 cut(s)	387, 401
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	195
BbrPI	CACGTG	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	252
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	326, 368
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	121
BpmI	CTGGAG	2 cut(s)	362, 390
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	5 cut(s)	116, 345, 359, 404, 407
Bse3DI	GCAATG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	243, 369
BseNI	ACTGG	5 cut(s)	116, 345, 359, 404, 407
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	195
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	389, 403
BslFI	GGGAC	2 cut(s)	18, 322
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	326, 368
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	2 cut(s)	18, 322
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	389, 403
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	2 cut(s)	149, 301
BspANI	GGCC	2 cut(s)	389, 403
BspCNI	CTCAG	2 cut(s)	244, 370
BspLI	GGNNCC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	5 cut(s)	116, 345, 359, 404, 407
BssECI	CCNNGG	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	252, 359, 378
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	388
BstMAI	GTCTC	2 cut(s)	326, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	389, 403
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	3 cut(s)	195, 338, 397
Cac8I	GCNNGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	2 cut(s)	185, 212
CviJI	RGCY	6 cut(s)	15, 251, 315, 358, 389, 403
CviKI_1	RGCY	6 cut(s)	15, 251, 315, 358, 389, 403
DdeI	CTNAG	3 cut(s)	252, 359, 378
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	184
Eco147I	AGGCCT	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	3 cut(s)	99, 219, 345
Eco72I	CACGTG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	2 cut(s)	188, 215
FaiI	YATR	6 cut(s)	30, 59, 65, 186, 213, 372
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	2 cut(s)	18, 322
FatI	CATG	2 cut(s)	184, 211
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	2 cut(s)	362, 390
HaeIII	GGCC	2 cut(s)	389, 403
Hin1II	CATG	2 cut(s)	188, 215
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	3 cut(s)	6, 83, 134
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	3 cut(s)	206, 271, 323
HpyAV	CCTTC	1 cut(s)	297
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	144, 395, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	252, 359, 378
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	188, 215
LpnPI	CCDG	8 cut(s)	90, 97, 217, 261, 326, 336, 340, 385
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	102
MboII	GAAGA	3 cut(s)	56, 92, 358
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	7 cut(s)	26, 109, 247, 373, 379, 400, 414
MroXI	GAANNNNTTC	1 cut(s)	87
MslI	CAYNNNNRTG	2 cut(s)	101, 343
MspA1I	CMGCKG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	184
NlaIII	CATG	2 cut(s)	188, 215
NlaIV	GGNNCC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	215
OliI	CACNNNNGTG	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	389
PctI	GAATGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	83, 134
PkrI	GCNGC	1 cut(s)	151
PmaCI	CACGTG	1 cut(s)	103
PmlI	CACGTG	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
PspCI	CACGTG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	251
RseI	CAYNNNNRTG	2 cut(s)	101, 343
SatI	GCNGC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	4 cut(s)	105, 236, 253, 317
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	101, 343
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	138
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	2 cut(s)	149, 301
StuI	AGGCCT	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	184
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	272
TasI	AATT	1 cut(s)	138
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	83, 134
TscAI	CASTG	3 cut(s)	202, 345, 404
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	3 cut(s)	202, 345, 404
VpaK11BI	GGWCC	1 cut(s)	118
XceI	RCATGY	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.