Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Forward (+)

87457034 .. 87457546

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG567400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCATCATCTATAAGCCAAACCATCACAGACCCTTCAGATCTCACTGATTTTGTCATAAACAAAGGCAATGGAGTAAAGGGTCTTTCCCAAATGGGACTCAAGAGCCTCCCAAAGCAATATATCCAACCCCTTGAAGAAAGAATGAGTATGAATATGACAAATATGCCTGAAGAATCCATTCCCATCATTGACGTGTCAAACTGGGAGGATCCGAAAGTGGCAGAATCAATTTGCAATGCGGCAGAGAAGTGGGGGTTCTTTCAACTACTCAACCATGGTGTGCCCATTGAAGTTCTTGAGCATGTCAAGGAAGCAACTCACAAGTTCTTTGAGATGCCAGCTGAGGAGAAGTGTAAGTTCTCGAAAGAGCATTCGTCTTCAAACAATGTCCGGTTTGGGACAAGCTTTAGTGCTGAAGCAGAGAAGGCACTGGAGTGGAAAGACTGGCTTAGTCTCTTCTATGTTTCTGAGGATGAGGCCTCTGCACACTGGCCTCCACTTTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

170

Amino Acids

19.23

Weight (kDa)

4.95

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 163	1.4e-23	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	206, 219
AcuI	CTGAAG	3 cut(s)	21, 192, 438
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	137, 266, 293, 384
AjiI	CACGTC	1 cut(s)	196
AleI	CACNNNNGTG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	344, 408
AluI	AGCT	2 cut(s)	344, 408
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	206, 219
AoxI	GGCC	2 cut(s)	480, 494
Asp700I	GAANNNNTTC	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	345
BccI	CCATC	2 cut(s)	32, 194
BcoDI	GTCTC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	14, 327
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	86, 320
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	393
Bse1I	ACTGG	4 cut(s)	209, 438, 452, 497
Bse3DI	GCAATG	2 cut(s)	76, 244
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	481
BseMI	GCAATG	2 cut(s)	76, 244
BseMII	CTCAG	2 cut(s)	336, 462
BseNI	ACTGG	4 cut(s)	209, 438, 452, 497
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	482, 496
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	111, 415
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	2 cut(s)	111, 415
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	482, 496
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	40, 211
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	482, 496
BspCNI	CTCAG	2 cut(s)	337, 463
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	2 cut(s)	206, 219
BsrDI	GCAATG	2 cut(s)	76, 244
BsrI	ACTGG	4 cut(s)	209, 438, 452, 497
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	40, 211
BssT1I	CCWWGG	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	345, 452, 471
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	2 cut(s)	43, 214
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	40, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	40, 211
BstYI	RGATCY	2 cut(s)	40, 211
BsuRI	GGCC	2 cut(s)	482, 496
BtgI	CCRYGG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	45, 431, 490
Cac8I	GCNNGC	1 cut(s)	342
CviAII	CATG	2 cut(s)	278, 305
CviJI	RGCY	7 cut(s)	18, 108, 344, 408, 451, 482, 496
CviKI_1	RGCY	7 cut(s)	18, 108, 344, 408, 451, 482, 496
DdeI	CTNAG	3 cut(s)	345, 452, 471
DpnI	GATC	2 cut(s)	42, 213
DpnII	GATC	2 cut(s)	40, 211
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	482
Eco57I	CTGAAG	3 cut(s)	21, 192, 438
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	2 cut(s)	281, 308
FaiI	YATR	9 cut(s)	14, 59, 123, 152, 158, 167, 279, 306, 465
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	2 cut(s)	111, 415
FatI	CATG	2 cut(s)	277, 304
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	482, 496
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	2 cut(s)	281, 308
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	3 cut(s)	99, 176, 227
HpaII	CCGG	1 cut(s)	394
Hpy188I	TCNGA	3 cut(s)	40, 216, 472
Hpy188III	TCNNGA	3 cut(s)	103, 299, 364
HpyAV	CCTTC	2 cut(s)	45, 421
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	237, 488, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	3 cut(s)	345, 452, 471
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	281, 308
Kzo9I	GATC	2 cut(s)	40, 211
LpnPI	CCDG	7 cut(s)	183, 190, 354, 407, 419, 433, 478
LweI	GCATC	2 cut(s)	14, 327
MaeII	ACGT	1 cut(s)	195
MalI	GATC	2 cut(s)	42, 213
MboI	GATC	2 cut(s)	40, 211
MboII	GAAGA	4 cut(s)	149, 185, 372, 451
MflI	RGATCY	2 cut(s)	40, 211
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	119, 202, 340, 466, 472, 493, 507
MroXI	GAANNNNTTC	1 cut(s)	180
MslI	CAYNNNNRTG	2 cut(s)	194, 436
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	428
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	2 cut(s)	40, 211
NlaIII	CATG	2 cut(s)	281, 308
NlaIV	GGNNCC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	308
OliI	CACNNNNGTG	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	482
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	176, 227
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	40, 211
PvuII	CAGCTG	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	194, 436
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	40, 211
SchI	GAGTC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	3 cut(s)	198, 346, 410
SfaNI	GCATC	2 cut(s)	14, 327
SmiMI	CAYNNNNRTG	2 cut(s)	194, 436
SmlI	CTYRAG	2 cut(s)	101, 299
SmoI	CTYRAG	2 cut(s)	101, 299
Sse9I	AATT	1 cut(s)	231
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	1 cut(s)	242
StuI	AGGCCT	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	277
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	365
TasI	AATT	1 cut(s)	231
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	176, 227
TscAI	CASTG	3 cut(s)	52, 438, 497
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	52, 438, 497
XceI	RCATGY	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.