Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Forward (+)

87453114 .. 87454697

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG567300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCACCATCTATAAGCCAAACCATCACAGACCCTTCAGATCTCACTGATTTTGTCATAAACAAAGGCAATGGAGTAAAGGGTCTTTCCCAAATGGGACTCAAAAGCCTCCCAAAGCAATATATCCAACCCCTTGAAGAAAGAATGAGTATGAATATGACAAAAATGCCTGAAGAATCCATTCCCATCATTGACATGTCAAACTGGGAAGACCCGAAAGTGGCAGAATCAATTTGCAATGCGGCAGAGAAGTGGGGGTTCTTTCAGCTACTCAACCATGGTGTGCCCATTGAAGTCCTTGAGCATGTCAAGGAAGCAACTCACAAGTTTTTTGAGATGCCAGCTGAGGAGAAGTGTAAGTTCTCGAAAGAGCATTCGTCTTCAAACAATGTCCGCTTTGGGACAAGCTTTAGTCCTGAAGCAGAGAAGGCACTGGAGTGGAAAGACTGGCTTAGTTTCTTCTATGTTTCTGAGGATGAGGCCTCTGCACACTGGCCTCCACTTTGCAAGGCTGAAGTGCTCGAATACATGAAGAGGACAGACATACTCATAAAACGACTCCTAGAGATACTGATGAAAAGGTTAAACGTGACAGAAATAGACACAACCAAGGAACCAATTCTAATGGGATCCAAGCGAATTAACCTCAACTACTACCCCGTTTGCCCAAACCCTGAGCTGACAGTTGGAGTTGGGCGTCACTCTGATGTCTCCACACTCACAATCCTCCTTCAAGACTACATCGGAGGGCTTTACGTCCGAGCTGAGACTACTGATGAAGATAGCTGGGTGCATGTTCCTCCATTGGAAGGGTCATTAGTGATCAACGTTGGTGATGCACTGCAAATAATGAGCAATGGAAAATACAAGAGCGTCGAGCATCGAGTGGTTGCTAATGGAAGTAAGACTAGAATTTCGGTTCCCATATTTGTGAATCCGAGGCCATCGGACGTGATAGGGCCTCTGCCTGAAGTGCTTGAGAGTAGTGGGGAGAAAGCATTGTATAAGCATCTGTATTCTGACTATGTCAGGCATTTCTTCCGGAAGGCTCATGATGGGAAGAGTACAGTTGACTTTGCCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

362

Amino Acids

40.95

Weight (kDa)

5.73

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 162	3.4e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 313	3.9e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccIII	TCCGGA	1 cut(s)	1041
AciI	CCGC	2 cut(s)	242, 394
AclI	AACGTT	1 cut(s)	828
AclWI	GGATC	2 cut(s)	624, 637
AcsI	RAATTY	1 cut(s)	912
AcuI	CTGAAG	5 cut(s)	21, 192, 438, 534, 990
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	1 cut(s)	1066
AfiI	CCNNNNNNNGG	2 cut(s)	220, 809
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	137, 293, 384, 734
AjiI	CACGTC	1 cut(s)	952
AleI	CACNNNNGTG	1 cut(s)	436
AluBI	AGCT	6 cut(s)	268, 344, 408, 679, 764, 786
AluI	AGCT	6 cut(s)	268, 344, 408, 679, 764, 786
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	715, 761
AlwI	GGATC	2 cut(s)	624, 637
Aor13HI	TCCGGA	1 cut(s)	1041
AoxI	GGCC	4 cut(s)	480, 494, 941, 959
ApoI	RAATTY	1 cut(s)	912
ArsI	GACNNNNNNTTYG	2 cut(s)	898, 930
Asp700I	GAANNNNTTC	2 cut(s)	180, 618
AspS9I	GGNCC	1 cut(s)	959
AsuHPI	GGTGA	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	216, 372
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	345
BccI	CCATC	5 cut(s)	16, 32, 194, 952, 1049
BclI	TGATCA	1 cut(s)	822
BcoDI	GTCTC	2 cut(s)	715, 761
BfaI	CTAG	2 cut(s)	563, 909
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	952
BmgT120I	GGNCC	1 cut(s)	959
BmiI	GGNNCC	4 cut(s)	6, 615, 631, 921
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	4 cut(s)	327, 826, 889, 1018
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	2 cut(s)	216, 372
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	2 cut(s)	345, 675
BpuEI	CTTGAG	2 cut(s)	320, 998
BsaHI	GRCGYC	1 cut(s)	697
BsaJI	CCNNGG	3 cut(s)	277, 609, 938
BsaWI	WCCGGW	1 cut(s)	1041
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 809
Bse1I	ACTGG	4 cut(s)	209, 438, 452, 497
Bse3DI	GCAATG	3 cut(s)	76, 244, 862
BseAI	TCCGGA	1 cut(s)	1041
BseDI	CCNNGG	3 cut(s)	277, 609, 938
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	220, 809
BseMI	GCAATG	3 cut(s)	76, 244, 862
BseMII	CTCAG	4 cut(s)	336, 462, 666, 756
BseNI	ACTGG	4 cut(s)	209, 438, 452, 497
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	786
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	482, 496, 943, 961
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	1042
BslFI	GGGAC	2 cut(s)	111, 415
BslI	CCNNNNNNNGG	2 cut(s)	220, 809
BsmAI	GTCTC	2 cut(s)	715, 761
BsmFI	GGGAC	2 cut(s)	111, 415
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	482, 496, 943, 961
Bsp1286I	GDGCHC	2 cut(s)	288, 522
Bsp13I	TCCGGA	1 cut(s)	1041
Bsp143I	GATC	3 cut(s)	40, 629, 822
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	242, 394
BspANI	GGCC	4 cut(s)	482, 496, 943, 961
BspCNI	CTCAG	4 cut(s)	337, 463, 667, 757
BspEI	TCCGGA	1 cut(s)	1041
BspHI	TCATGA	1 cut(s)	1051
BspLI	GGNNCC	4 cut(s)	6, 615, 631, 921
BspPI	GGATC	2 cut(s)	624, 637
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	3 cut(s)	76, 244, 862
BsrI	ACTGG	4 cut(s)	209, 438, 452, 497
BssECI	CCNNGG	3 cut(s)	277, 609, 938
BssMI	GATC	3 cut(s)	40, 629, 822
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	2 cut(s)	277, 609
Bst4CI	ACNGT	2 cut(s)	685, 1069
Bst6I	CTCTTC	2 cut(s)	527, 1055
BstACI	GRCGYC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	5 cut(s)	345, 452, 471, 675, 765
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	3 cut(s)	43, 632, 825
BstMAI	GTCTC	2 cut(s)	715, 761
BstMBI	GATC	3 cut(s)	40, 629, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 973
BstNSI	RCATGY	3 cut(s)	199, 308, 797
BstSLI	GKGCMC	1 cut(s)	288
BstV2I	GAAGAC	2 cut(s)	216, 372
BstX2I	RGATCY	2 cut(s)	40, 629
BstYI	RGATCY	2 cut(s)	40, 629
BsuRI	GGCC	4 cut(s)	482, 496, 943, 961
BtgI	CCRYGG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	952
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	4 cut(s)	45, 431, 490, 839
Cac8I	GCNNGC	1 cut(s)	342
CciI	TCATGA	1 cut(s)	1051
Cfr13I	GGNCC	1 cut(s)	959
CseI	GACGC	2 cut(s)	686, 862
Csp6I	GTAC	1 cut(s)	1065
CviAII	CATG	6 cut(s)	196, 278, 305, 529, 794, 1052
CviQI	GTAC	1 cut(s)	1065
DdeI	CTNAG	5 cut(s)	345, 452, 471, 675, 765
DpnI	GATC	3 cut(s)	42, 631, 824
DpnII	GATC	3 cut(s)	40, 629, 822
Eam1104I	CTCTTC	2 cut(s)	527, 1055
EarI	CTCTTC	2 cut(s)	527, 1055
Eco130I	CCWWGG	2 cut(s)	277, 609
Eco147I	AGGCCT	1 cut(s)	482
Eco57I	CTGAAG	5 cut(s)	21, 192, 438, 534, 990
EcoO109I	RGGNCCY	1 cut(s)	959
EcoT14I	CCWWGG	2 cut(s)	277, 609
ErhI	CCWWGG	2 cut(s)	277, 609
FaeI	CATG	6 cut(s)	199, 281, 308, 532, 797, 1055
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	2 cut(s)	111, 415
FatI	CATG	6 cut(s)	195, 277, 304, 528, 793, 1051
FbaI	TGATCA	1 cut(s)	822
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	563, 909
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	790
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	4 cut(s)	482, 496, 943, 961
HapII	CCGG	1 cut(s)	1042
HgaI	GACGC	2 cut(s)	686, 862
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	6 cut(s)	199, 281, 308, 532, 797, 1055
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	5 cut(s)	99, 176, 227, 558, 934
HpaII	CCGG	1 cut(s)	1042
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	1 cut(s)	1072
Hpy188I	TCNGA	9 cut(s)	40, 472, 706, 746, 761, 939, 949, 1021, 1088
Hpy188III	TCNNGA	5 cut(s)	364, 416, 734, 1042, 1052
Hpy8I	GTNNAC	1 cut(s)	1072
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	5 cut(s)	45, 421, 740, 803, 1039
HpyCH4III	ACNGT	2 cut(s)	685, 1069
HpyCH4IV	ACGT	4 cut(s)	588, 756, 828, 951
HpyCH4V	TGCA	6 cut(s)	237, 488, 507, 793, 839, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 973
HpyF3I	CTNAG	5 cut(s)	345, 452, 471, 675, 765
HpySE526I	ACGT	4 cut(s)	588, 756, 828, 951
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	6 cut(s)	199, 281, 308, 532, 797, 1055
Kpn2I	TCCGGA	1 cut(s)	1041
Ksp22I	TGATCA	1 cut(s)	822
Kzo9I	GATC	3 cut(s)	40, 629, 822
LweI	GCATC	4 cut(s)	327, 826, 889, 1018
MaeI	CTAG	2 cut(s)	563, 909
MaeII	ACGT	4 cut(s)	588, 756, 828, 951
MaeIII	GTNAC	2 cut(s)	589, 698
MalI	GATC	3 cut(s)	42, 631, 824
MboI	GATC	3 cut(s)	40, 629, 822
MboII	GAAGA	9 cut(s)	149, 185, 221, 372, 451, 544, 791, 1030, 1072
MflI	RGATCY	2 cut(s)	40, 629
MhlI	GDGCHC	2 cut(s)	288, 522
MluCI	AATT	4 cut(s)	231, 618, 639, 912
MlyI	GAGTC	2 cut(s)	93, 552
MmeI	TCCRAC	2 cut(s)	151, 667
MroI	TCCGGA	1 cut(s)	1041
MroXI	GAANNNNTTC	2 cut(s)	180, 618
MseI	TTAA	2 cut(s)	584, 642
MslI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 929
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	1042
Mva1269I	GAATGC	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	428, 973
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	3 cut(s)	40, 629, 822
NlaIII	CATG	6 cut(s)	199, 281, 308, 532, 797, 1055
NlaIV	GGNNCC	4 cut(s)	6, 615, 631, 921
NmuCI	GTSAC	2 cut(s)	589, 698
NspI	RCATGY	3 cut(s)	199, 308, 797
OliI	CACNNNNGTG	1 cut(s)	436
PagI	TCATGA	1 cut(s)	1051
PceI	AGGCCT	1 cut(s)	482
PciI	ACATGT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	2 cut(s)	180, 618
PfeI	GAWTC	3 cut(s)	176, 227, 934
PflFI	GACNNNGTC	1 cut(s)	1025
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	93, 552
PpsI	GAGTC	2 cut(s)	93, 552
PscI	ACATGT	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	828
PspFI	CCCAGC	1 cut(s)	786
PspN4I	GGNNCC	4 cut(s)	6, 615, 631, 921
PspPI	GGNCC	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	40, 629
PsyI	GACNNNGTC	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	1066
RsaNI	GTAC	1 cut(s)	1065
RseI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 929
SaqAI	TTAA	2 cut(s)	584, 642
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	40, 629, 822
Sau96I	GGNCC	1 cut(s)	959
SchI	GAGTC	2 cut(s)	93, 552
SduI	GDGCHC	2 cut(s)	288, 522
SfaNI	GCATC	4 cut(s)	327, 826, 889, 1018
SmiMI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 929
SmlI	CTYRAG	2 cut(s)	299, 977
SmoI	CTYRAG	2 cut(s)	299, 977
Sse9I	AATT	4 cut(s)	231, 618, 639, 912
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	2 cut(s)	242, 394
SspMI	CTAG	2 cut(s)	563, 909
StuI	AGGCCT	1 cut(s)	482
StyI	CCWWGG	2 cut(s)	277, 609
TaaI	ACNGT	2 cut(s)	685, 1069
TaiI	ACGT	4 cut(s)	591, 759, 831, 954
TaqI	TCGA	4 cut(s)	365, 522, 876, 883
TasI	AATT	4 cut(s)	231, 618, 639, 912
TatI	WGTACW	1 cut(s)	1064
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	176, 227, 934
Tru1I	TTAA	2 cut(s)	584, 642
Tru9I	TTAA	2 cut(s)	584, 642
TscAI	CASTG	4 cut(s)	52, 438, 497, 846
TseFI	GTSAC	2 cut(s)	589, 698
Tsp45I	GTSAC	2 cut(s)	589, 698
TspDTI	ATGAA	4 cut(s)	167, 545, 590, 792
TspRI	CASTG	4 cut(s)	52, 438, 497, 846
Tth111I	GACNNNGTC	1 cut(s)	1025
XapI	RAATTY	1 cut(s)	912
XceI	RCATGY	3 cut(s)	199, 308, 797
XmnI	GAANNNNTTC	2 cut(s)	180, 618
XspI	CTAG	2 cut(s)	563, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.