Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

86291499 .. 86293100

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCACCATCTATAAGCCAAACCATCACAGACCCTTCAGATCTCACTGATTTTGTCATAAACAAAGGCAATGGAGTAAAGGGTCTTTCCCAAATGGGACTCAAAAGCCTCCCAAAGCAATATATCCAACCCCTTGAAGAAAGAATGAGTATGAATATGACAAAAATGCCTGAAGAATCCATTCCCATCATTGACGTGTCAAACTGGGAGGACCCGAAAGTGGCAGAATCAATTTGCAATGCGGCAGAGAAGTGGGGGTTCTTTCAACTACTCAACCATGGTGTGCCCATTGAAGTCCTTGAGCATGTAAAGGAAGCAACTCACAAGTTTTTTGAGATGCCGGCTGAGGAGAAGTGTAAGTTCTCGAAAGAGCATTCGTCTTCAAACAATGTCCGGTTTGGGACAAGCTTTAGTCCTGAAGCAGAGAAGGCACTGGAGTGGAAAGACTGGCTTAGTCTCTTCTATGTTTCTGAGGATGAGGCCTCTGCACACTGGCCTCCAGTTTGCAAGGCTGAAGTGCTCGAATACATGAAGAGGACAGATATACTCATAAAACGACTCCTAGAGATACTGATGAAAAGGTTAAACGTGACAGAAATAGACACAACCAAAGAACCACTTCTAATGGGATCCAAGCGAATTAACCTCAACTACTACCCCGTTTGCCCAAACCCTGAGCTGACAGTTGGAGTTGGGCGTCACTCTGATGTCTCCACACTCACAATCCTCCTTCAAGACTACATTGGAGGGCTTTACGTCCGAGCTGAGACTACTGATGAAGATACCTGGATGCATGTTCCTCCATTGGATGGGTCATTAGTGATCAACGTTGGTGATGCACTGCAAATAATGAGCAATGGAAAATACAAGAGCGTCGAGCATCGAGTGGTTGCTAATGGAAGTAAGACTAGAATTTCGGTTCCCATATTTGTGAATCCGAGGCCATCGGACGTAATAGGGCCTCTGCCAGAAGTGCTTGAGAGTAGTGGGGAGAAACCATTATATAAGCAAGTTCTGTATTCTGACTATGTCAGGCATTTCTTCCGGAAGGCTCATGATGGGAAGAGTACAGTTGACTTTGCCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

363

Amino Acids

41.02

Weight (kDa)

5.66

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 160	1.2e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 313	9.3e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccIII	TCCGGA	1 cut(s)	1044
AciI	CCGC	1 cut(s)	242
AclI	AACGTT	1 cut(s)	828
AclWI	GGATC	2 cut(s)	624, 637
AcsI	RAATTY	1 cut(s)	912
AcuI	CTGAAG	4 cut(s)	21, 192, 438, 534
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	1 cut(s)	1069
AfiI	CCNNNNNNNGG	2 cut(s)	220, 809
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	137, 266, 293, 384, 734
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	785
AleI	CACNNNNGTG	1 cut(s)	436
AluBI	AGCT	3 cut(s)	408, 679, 764
AluI	AGCT	3 cut(s)	408, 679, 764
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	3 cut(s)	461, 715, 761
AlwI	GGATC	2 cut(s)	624, 637
Aor13HI	TCCGGA	1 cut(s)	1044
AoxI	GGCC	4 cut(s)	480, 494, 941, 959
ApoI	RAATTY	1 cut(s)	912
ArsI	GACNNNNNNTTYG	2 cut(s)	898, 930
Asp700I	GAANNNNTTC	2 cut(s)	180, 618
AspS9I	GGNCC	2 cut(s)	211, 959
AsuHPI	GGTGA	1 cut(s)	845
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	345
BccI	CCATC	6 cut(s)	16, 32, 194, 803, 952, 1052
BciT130I	CCWGG	1 cut(s)	787
BclI	TGATCA	1 cut(s)	822
BcoDI	GTCTC	3 cut(s)	461, 715, 761
BfaI	CTAG	2 cut(s)	563, 909
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	787
Bme18I	GGWCC	1 cut(s)	211
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	211, 959
BmiI	GGNNCC	4 cut(s)	6, 213, 631, 921
BmrFI	CCNGG	1 cut(s)	787
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	4 cut(s)	327, 780, 826, 889
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	2 cut(s)	455, 483
Bpu10I	CCTNAGC	2 cut(s)	345, 675
BpuEI	CTTGAG	2 cut(s)	320, 998
BsaHI	GRCGYC	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	277, 938
BsaWI	WCCGGW	2 cut(s)	393, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 809
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	5 cut(s)	209, 438, 452, 497, 500
Bse3DI	GCAATG	3 cut(s)	76, 244, 862
BseAI	TCCGGA	1 cut(s)	1044
BseBI	CCWGG	1 cut(s)	787
BseDI	CCNNGG	2 cut(s)	277, 938
BseGI	GGATG	3 cut(s)	481, 795, 814
BseLI	CCNNNNNNNGG	2 cut(s)	220, 809
BseMI	GCAATG	3 cut(s)	76, 244, 862
BseMII	CTCAG	4 cut(s)	336, 462, 666, 756
BseNI	ACTGG	5 cut(s)	209, 438, 452, 497, 500
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	482, 496, 943, 961
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	3 cut(s)	341, 394, 1045
BslFI	GGGAC	2 cut(s)	111, 415
BslI	CCNNNNNNNGG	2 cut(s)	220, 809
BsmAI	GTCTC	3 cut(s)	461, 715, 761
BsmFI	GGGAC	2 cut(s)	111, 415
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	482, 496, 943, 961
Bsp1286I	GDGCHC	2 cut(s)	288, 522
Bsp13I	TCCGGA	1 cut(s)	1044
Bsp143I	GATC	3 cut(s)	40, 629, 822
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	4 cut(s)	482, 496, 943, 961
BspCNI	CTCAG	4 cut(s)	337, 463, 667, 757
BspEI	TCCGGA	1 cut(s)	1044
BspHI	TCATGA	1 cut(s)	1054
BspLI	GGNNCC	4 cut(s)	6, 213, 631, 921
BspPI	GGATC	2 cut(s)	624, 637
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	3 cut(s)	76, 244, 862
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	5 cut(s)	209, 438, 452, 497, 500
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	277, 938
BssMI	GATC	3 cut(s)	40, 629, 822
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	787
Bst4CI	ACNGT	2 cut(s)	685, 1072
Bst6I	CTCTTC	3 cut(s)	464, 527, 1058
BstACI	GRCGYC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	5 cut(s)	345, 452, 471, 675, 765
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	481, 795, 814
BstKTI	GATC	3 cut(s)	43, 632, 825
BstMAI	GTCTC	3 cut(s)	461, 715, 761
BstMBI	GATC	3 cut(s)	40, 629, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 973
BstNI	CCWGG	1 cut(s)	787
BstNSI	RCATGY	2 cut(s)	308, 797
BstSCI	CCNGG	1 cut(s)	785
BstSLI	GKGCMC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	40, 629
BstYI	RGATCY	2 cut(s)	40, 629
BsuRI	GGCC	4 cut(s)	482, 496, 943, 961
BtgI	CCRYGG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	481, 795, 814
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	4 cut(s)	45, 431, 490, 839
Cac8I	GCNNGC	1 cut(s)	342
CciI	TCATGA	1 cut(s)	1054
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	211, 959
CseI	GACGC	2 cut(s)	686, 862
Csp6I	GTAC	1 cut(s)	1068
CviAII	CATG	5 cut(s)	278, 305, 529, 794, 1055
CviQI	GTAC	1 cut(s)	1068
DdeI	CTNAG	5 cut(s)	345, 452, 471, 675, 765
DpnI	GATC	3 cut(s)	42, 631, 824
DpnII	GATC	3 cut(s)	40, 629, 822
Eam1104I	CTCTTC	3 cut(s)	464, 527, 1058
EarI	CTCTTC	3 cut(s)	464, 527, 1058
Eco130I	CCWWGG	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	4 cut(s)	21, 192, 438, 534
EcoO109I	RGGNCCY	2 cut(s)	211, 959
EcoRII	CCWGG	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	5 cut(s)	281, 308, 532, 797, 1058
FalI	AAGNNNNNCTT	4 cut(s)	435, 467, 603, 635
FaqI	GGGAC	2 cut(s)	111, 415
FatI	CATG	5 cut(s)	277, 304, 528, 793, 1054
FbaI	TGATCA	1 cut(s)	822
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	3 cut(s)	488, 802, 821
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	563, 909
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	2 cut(s)	455, 483
HaeIII	GGCC	4 cut(s)	482, 496, 943, 961
HapII	CCGG	3 cut(s)	341, 394, 1045
HgaI	GACGC	2 cut(s)	686, 862
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	5 cut(s)	281, 308, 532, 797, 1058
HincII	GTYRAC	1 cut(s)	1075
HindII	GTYRAC	1 cut(s)	1075
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	5 cut(s)	99, 176, 227, 558, 934
HpaII	CCGG	3 cut(s)	341, 394, 1045
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	1 cut(s)	1075
Hpy188I	TCNGA	8 cut(s)	40, 472, 706, 761, 939, 949, 1024, 1091
Hpy188III	TCNNGA	5 cut(s)	364, 416, 734, 1045, 1055
Hpy8I	GTNNAC	1 cut(s)	1075
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	4 cut(s)	45, 421, 740, 1042
HpyCH4III	ACNGT	2 cut(s)	685, 1072
HpyCH4IV	ACGT	5 cut(s)	195, 588, 756, 828, 951
HpyCH4V	TGCA	6 cut(s)	237, 488, 507, 793, 839, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 973
HpyF3I	CTNAG	5 cut(s)	345, 452, 471, 675, 765
HpySE526I	ACGT	5 cut(s)	195, 588, 756, 828, 951
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	5 cut(s)	281, 308, 532, 797, 1058
Kpn2I	TCCGGA	1 cut(s)	1044
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	822
Kzo9I	GATC	3 cut(s)	40, 629, 822
LweI	GCATC	4 cut(s)	327, 780, 826, 889
MaeI	CTAG	2 cut(s)	563, 909
MaeII	ACGT	5 cut(s)	195, 588, 756, 828, 951
MaeIII	GTNAC	2 cut(s)	589, 698
MalI	GATC	3 cut(s)	42, 631, 824
MboI	GATC	3 cut(s)	40, 629, 822
MboII	GAAGA	8 cut(s)	149, 185, 372, 451, 544, 791, 1033, 1075
MflI	RGATCY	2 cut(s)	40, 629
MhlI	GDGCHC	2 cut(s)	288, 522
MluCI	AATT	3 cut(s)	231, 639, 912
MlyI	GAGTC	2 cut(s)	93, 552
MmeI	TCCRAC	2 cut(s)	151, 667
Mph1103I	ATGCAT	1 cut(s)	795
MroI	TCCGGA	1 cut(s)	1044
MroNI	GCCGGC	1 cut(s)	340
MroXI	GAANNNNTTC	2 cut(s)	180, 618
MseI	TTAA	2 cut(s)	584, 642
MslI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 929
MspI	CCGG	3 cut(s)	341, 394, 1045
MspR9I	CCNGG	1 cut(s)	787
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	787
MwoI	GCNNNNNNNGC	2 cut(s)	428, 973
NaeI	GCCGGC	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	3 cut(s)	40, 629, 822
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	5 cut(s)	281, 308, 532, 797, 1058
NlaIV	GGNNCC	4 cut(s)	6, 213, 631, 921
NmuCI	GTSAC	2 cut(s)	589, 698
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	2 cut(s)	308, 797
OliI	CACNNNNGTG	1 cut(s)	436
PagI	TCATGA	1 cut(s)	1054
PceI	AGGCCT	1 cut(s)	482
PctI	GAATGC	1 cut(s)	373
PdiI	GCCGGC	1 cut(s)	342
PdmI	GAANNNNTTC	2 cut(s)	180, 618
PfeI	GAWTC	3 cut(s)	176, 227, 934
PflFI	GACNNNGTC	1 cut(s)	1028
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	93, 552
PpsI	GAGTC	2 cut(s)	93, 552
PpuMI	RGGWCCY	1 cut(s)	211
Psp1406I	AACGTT	1 cut(s)	828
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	785
PspGI	CCWGG	1 cut(s)	785
PspN4I	GGNNCC	4 cut(s)	6, 213, 631, 921
PspPI	GGNCC	2 cut(s)	211, 959
PspPPI	RGGWCCY	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	40, 629
PsyI	GACNNNGTC	1 cut(s)	1028
RsaI	GTAC	1 cut(s)	1069
RsaNI	GTAC	1 cut(s)	1068
RseI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 929
SaqAI	TTAA	2 cut(s)	584, 642
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	40, 629, 822
Sau96I	GGNCC	2 cut(s)	211, 959
SchI	GAGTC	2 cut(s)	93, 552
ScrFI	CCNGG	1 cut(s)	787
SduI	GDGCHC	2 cut(s)	288, 522
SfaNI	GCATC	4 cut(s)	327, 780, 826, 889
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 929
SmlI	CTYRAG	2 cut(s)	299, 977
SmoI	CTYRAG	2 cut(s)	299, 977
Sse9I	AATT	3 cut(s)	231, 639, 912
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	563, 909
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	785
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	685, 1072
TaiI	ACGT	5 cut(s)	198, 591, 759, 831, 954
TaqI	TCGA	4 cut(s)	365, 522, 876, 883
TasI	AATT	3 cut(s)	231, 639, 912
TatI	WGTACW	1 cut(s)	1067
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	176, 227, 934
Tru1I	TTAA	2 cut(s)	584, 642
Tru9I	TTAA	2 cut(s)	584, 642
TscAI	CASTG	4 cut(s)	52, 438, 497, 846
TseFI	GTSAC	2 cut(s)	589, 698
Tsp45I	GTSAC	2 cut(s)	589, 698
TspDTI	ATGAA	4 cut(s)	167, 545, 590, 792
TspRI	CASTG	4 cut(s)	52, 438, 497, 846
Tth111I	GACNNNGTC	1 cut(s)	1028
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	912
XceI	RCATGY	2 cut(s)	308, 797
XmnI	GAANNNNTTC	2 cut(s)	180, 618
XspI	CTAG	2 cut(s)	563, 909
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.