Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Forward (+)

87460398 .. 87465766

Gene Structure 5369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG567600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCCAAAGTTTTACTTGGGCTCGCAAAGAAGATGGGGTTGTGGGCTGAAGTGCTCGAATACATGAAGAGGACAGACGTACTCATAAAACGACTCCTAGAGATACTGATGAAAAGGCTAAACGTGACAGTAATAAACACAACCAAAGAACCACTTCTAATGGGATCCAGGCGAATTAACCTCAACTACTACCCCGTTTGCCCAAACCCTGAGCTGACAGTTGGAGTTGGGCGTCACTCTGATGTCTCCACACTCACAATCCTCCTTCAAGACTACATCGGAGGGCTTTACGTCCGAGCTGAGACTACTGATGAAGATAGCTGGGTGCATGTTCCTCCATTGGAAGGGTCATTAGTGATCAACGTTGGTGATGCACTGCAAATAATGAGCAATGGAAAATACAAGAGCGTCGAGCATCGAGTGGTTGCTAATGGAAGTAAGACTAGAGTTTCGGTTCCCATATTTGTGAATCTGAGGCCATCGGACGTGATAGGGCCTCTGCCTGAAGTGCTTGAGAGTAGTGGGGAGAAAGCAATGTATAAGCAAGTTCTGTATTCTGACTACGTCAGGCATTTCTTCCGGAAGGCTCATGATGGGAAGAGTACAGTTGACTTTGCCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

208

Amino Acids

23.36

Weight (kDa)

9.21

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	60 - 157	5.1e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	579
AclI	AACGTT	1 cut(s)	363
AclWI	GGATC	2 cut(s)	159, 172
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	69, 525
AcyI	GRCGYC	1 cut(s)	232
AfaI	GTAC	2 cut(s)	81, 604
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	269
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	3 cut(s)	214, 299, 321
AluI	AGCT	3 cut(s)	214, 299, 321
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	250, 296
AlwI	GGATC	2 cut(s)	159, 172
Aor13HI	TCCGGA	1 cut(s)	579
AoxI	GGCC	3 cut(s)	3, 476, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	3 cut(s)	28, 487, 587
BciT130I	CCWGG	1 cut(s)	169
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	250, 296
BfaI	CTAG	2 cut(s)	98, 444
Bme1390I	CCNGG	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	2 cut(s)	166, 456
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	361, 424
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse3DI	GCAATG	2 cut(s)	397, 540
BseAI	TCCGGA	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	2 cut(s)	397, 540
BseMII	CTCAG	3 cut(s)	201, 291, 464
BseYI	CCCAGC	1 cut(s)	321
BshFI	GGCC	3 cut(s)	5, 478, 496
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	2 cut(s)	250, 296
BsnI	GGCC	3 cut(s)	5, 478, 496
Bsp1286I	GDGCHC	2 cut(s)	24, 57
Bsp13I	TCCGGA	1 cut(s)	579
Bsp143I	GATC	2 cut(s)	164, 357
BspANI	GGCC	3 cut(s)	5, 478, 496
BspCNI	CTCAG	3 cut(s)	202, 292, 465
BspEI	TCCGGA	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	166, 456
BspPI	GGATC	2 cut(s)	159, 172
BsrDI	GCAATG	2 cut(s)	397, 540
BssMI	GATC	2 cut(s)	164, 357
BssNI	GRCGYC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	130, 220, 607
Bst6I	CTCTTC	2 cut(s)	62, 593
BstACI	GRCGYC	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	210, 300, 473
BstKTI	GATC	2 cut(s)	167, 360
BstMAI	GTCTC	2 cut(s)	250, 296
BstMBI	GATC	2 cut(s)	164, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	5, 478, 496
BtrI	CACGTC	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	494
CseI	GACGC	2 cut(s)	221, 397
Csp6I	GTAC	2 cut(s)	80, 603
CviAII	CATG	3 cut(s)	64, 329, 590
CviQI	GTAC	2 cut(s)	80, 603
DdeI	CTNAG	3 cut(s)	210, 300, 473
DpnI	GATC	2 cut(s)	166, 359
DpnII	GATC	2 cut(s)	164, 357
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	62, 593
EarI	CTCTTC	2 cut(s)	62, 593
Eco24I	GRGCYC	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	69, 525
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	3 cut(s)	67, 332, 593
FaiI	YATR	6 cut(s)	65, 86, 330, 461, 540, 591
FalI	AAGNNNNNCTT	3 cut(s)	32, 138, 170
FatI	CATG	3 cut(s)	63, 328, 589
FbaI	TGATCA	1 cut(s)	357
FriOI	GRGCYC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	98, 444
GsaI	CCCAGC	1 cut(s)	325
HaeIII	GGCC	3 cut(s)	5, 478, 496
HapII	CCGG	1 cut(s)	580
HgaI	GACGC	2 cut(s)	221, 397
Hin1I	GRCGYC	1 cut(s)	232
Hin1II	CATG	3 cut(s)	67, 332, 593
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	2 cut(s)	93, 469
HpaII	CCGG	1 cut(s)	580
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	7 cut(s)	241, 281, 296, 474, 484, 559, 626
Hpy188III	TCNNGA	3 cut(s)	269, 580, 590
Hpy8I	GTNNAC	1 cut(s)	610
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	3 cut(s)	275, 338, 577
HpyCH4III	ACNGT	3 cut(s)	130, 220, 607
HpyCH4IV	ACGT	6 cut(s)	78, 123, 291, 363, 486, 564
HpyCH4V	TGCA	3 cut(s)	328, 374, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	3 cut(s)	210, 300, 473
HpySE526I	ACGT	6 cut(s)	78, 123, 291, 363, 486, 564
Hsp92I	GRCGYC	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	67, 332, 593
Kpn2I	TCCGGA	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	164, 357
LpnPI	CCDG	7 cut(s)	154, 181, 222, 307, 516, 553, 593
LweI	GCATC	2 cut(s)	361, 424
MaeI	CTAG	2 cut(s)	98, 444
MaeII	ACGT	6 cut(s)	78, 123, 291, 363, 486, 564
MaeIII	GTNAC	2 cut(s)	124, 233
MalI	GATC	2 cut(s)	166, 359
MboI	GATC	2 cut(s)	164, 357
MboII	GAAGA	5 cut(s)	43, 79, 326, 568, 610
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	24, 57
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	174
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	7 cut(s)	63, 191, 272, 275, 345, 468, 507
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	2 cut(s)	240, 464
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	580
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	508
NdeII	GATC	2 cut(s)	164, 357
NlaIII	CATG	3 cut(s)	67, 332, 593
NlaIV	GGNNCC	2 cut(s)	166, 456
NmuCI	GTSAC	2 cut(s)	124, 233
NspI	RCATGY	1 cut(s)	332
PagI	TCATGA	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	469
PflFI	GACNNNGTC	1 cut(s)	563
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	166, 456
PspPI	GGNCC	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	164
PsyI	GACNNNGTC	1 cut(s)	563
RsaI	GTAC	2 cut(s)	81, 604
RsaNI	GTAC	2 cut(s)	80, 603
RseI	CAYNNNNRTG	2 cut(s)	240, 464
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	164, 357
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	2 cut(s)	24, 57
SfaNI	GCATC	2 cut(s)	361, 424
SmiMI	CAYNNNNRTG	2 cut(s)	240, 464
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	1 cut(s)	174
SspMI	CTAG	2 cut(s)	98, 444
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	130, 220, 607
TaiI	ACGT	6 cut(s)	81, 126, 294, 366, 489, 567
TaqI	TCGA	3 cut(s)	57, 411, 418
TasI	AATT	1 cut(s)	174
TatI	WGTACW	1 cut(s)	602
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	2 cut(s)	124, 233
Tsp45I	GTSAC	2 cut(s)	124, 233
TspDTI	ATGAA	3 cut(s)	80, 125, 327
TspRI	CASTG	1 cut(s)	381
Tth111I	GACNNNGTC	1 cut(s)	563
XceI	RCATGY	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	2 cut(s)	98, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.