Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

86218788 .. 86220054

Gene Structure 1267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCGGCTGAGGAGAAGTGTAAGTTCTCGAAAGAGCATTCGTCTTCAAACAATGTCCGGTTTGGGACAAGCTTTAGTCCTGAAGCAGAGAAGGCACTGGAGTGGAAAGACTGGCTTAGTCTCTTCTATGTTTCTGAGGATGAGGCCTCTGCACACTGGCCTCCAGTTTGCAAGGCTGAAGTGCTCGAATACATGATGAAGAGGACAGATATACTCATAAAACGACTCCTAGAGATACTGATGAAAAGGTTAAACGTGACAGAAATAGACACAACCAAAGAACCACTTCTAATGGGATCCAAGCGAATTAACCTCAACTACTACCCCGTTTGCCCAAACCCTGAGCTGACAGTTGGAGTTGGGCGTCACTCTGATGTCTCCACACTCACAATCCTCCTTCAAGACTACGTCGGAGGGCTTTACGTCCGAGCTGAGACTACTGATGAAGATAGCTGGGTGCATGTTCCTCCATTGGAAGGGTCATTAGTGATCAACGTTGGTGATGCACTGCAAATAATGAGCAATGGAAAATACAAGAGCGTCGAGCATCGAGTGGTTGCTAATGGAAGTAAGACTAGAATTTCGGTTCCCATATTTGTGAATCCGAGGCCATCGGACGTGATAGGGCCTCTGCATGAAGTGCTTGAGAGTAGTGGGGAGAAACCATTGTATAAGCAAGTTCTGTATTCTGACTATGTCAAGCATTTCTTCCGGAAGGCTCATGATGGGAAGATTACAGTTGACTTCGCCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

252

Amino Acids

28.55

Weight (kDa)

6.26

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	104 - 202	8.3e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	711
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	2 cut(s)	291, 304
AcsI	RAATTY	1 cut(s)	579
AcuI	CTGAAG	2 cut(s)	102, 198
AcyI	GRCGYC	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	48, 401
AjiI	CACGTC	1 cut(s)	619
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	4 cut(s)	72, 346, 431, 453
AluI	AGCT	4 cut(s)	72, 346, 431, 453
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	3 cut(s)	125, 382, 428
AlwI	GGATC	2 cut(s)	291, 304
Aor13HI	TCCGGA	1 cut(s)	711
AoxI	GGCC	4 cut(s)	144, 158, 608, 626
ApoI	RAATTY	1 cut(s)	579
ArsI	GACNNNNNNTTYG	2 cut(s)	565, 597
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	626
AsuHPI	GGTGA	1 cut(s)	512
BamHI	GGATCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	9
BccI	CCATC	2 cut(s)	619, 719
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	3 cut(s)	125, 382, 428
BfaI	CTAG	2 cut(s)	230, 576
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	2 cut(s)	298, 588
BmsI	GCATC	2 cut(s)	493, 556
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	2 cut(s)	119, 147
Bpu10I	CCTNAGC	2 cut(s)	9, 342
BpuEI	CTTGAG	1 cut(s)	665
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	605
BsaWI	WCCGGW	2 cut(s)	57, 711
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	4 cut(s)	102, 116, 161, 164
Bse3DI	GCAATG	1 cut(s)	529
BseAI	TCCGGA	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	3 cut(s)	126, 333, 423
BseNI	ACTGG	4 cut(s)	102, 116, 161, 164
BseRI	GAGGAG	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	453
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	146, 160, 610, 628
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	3 cut(s)	5, 58, 712
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	3 cut(s)	125, 382, 428
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	4 cut(s)	146, 160, 610, 628
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	296, 489
BspANI	GGCC	4 cut(s)	146, 160, 610, 628
BspCNI	CTCAG	3 cut(s)	127, 334, 424
BspEI	TCCGGA	1 cut(s)	711
BspHI	TCATGA	1 cut(s)	721
BspLI	GGNNCC	2 cut(s)	298, 588
BspPI	GGATC	2 cut(s)	291, 304
BsrDI	GCAATG	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	4 cut(s)	102, 116, 161, 164
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	2 cut(s)	296, 489
BssNI	GRCGYC	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	352, 739
Bst6I	CTCTTC	2 cut(s)	128, 194
BstACI	GRCGYC	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	9, 116, 135, 342, 432
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	299, 492
BstMAI	GTCTC	3 cut(s)	125, 382, 428
BstMBI	GATC	2 cut(s)	296, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 640
BstNSI	RCATGY	1 cut(s)	464
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	4 cut(s)	146, 160, 610, 628
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	3 cut(s)	95, 154, 506
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	721
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	626
CseI	GACGC	2 cut(s)	353, 529
CviAII	CATG	4 cut(s)	193, 461, 635, 722
DdeI	CTNAG	5 cut(s)	9, 116, 135, 342, 432
DpnI	GATC	2 cut(s)	298, 491
DpnII	GATC	2 cut(s)	296, 489
Eam1104I	CTCTTC	2 cut(s)	128, 194
EarI	CTCTTC	2 cut(s)	128, 194
Eco147I	AGGCCT	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	102, 198
EcoO109I	RGGNCCY	1 cut(s)	626
FaeI	CATG	4 cut(s)	196, 464, 638, 725
FalI	AAGNNNNNCTT	6 cut(s)	99, 131, 270, 302, 692, 724
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	4 cut(s)	192, 460, 634, 721
FbaI	TGATCA	1 cut(s)	489
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	2 cut(s)	230, 576
GsaI	CCCAGC	1 cut(s)	457
GsuI	CTGGAG	2 cut(s)	119, 147
HaeIII	GGCC	4 cut(s)	146, 160, 610, 628
HapII	CCGG	3 cut(s)	5, 58, 712
HgaI	GACGC	2 cut(s)	353, 529
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	4 cut(s)	196, 464, 638, 725
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	2 cut(s)	225, 601
HpaII	CCGG	3 cut(s)	5, 58, 712
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	8 cut(s)	136, 373, 413, 428, 606, 616, 691, 758
Hpy188III	TCNNGA	5 cut(s)	28, 80, 401, 712, 722
Hpy8I	GTNNAC	1 cut(s)	742
Hpy99I	CGWCG	2 cut(s)	413, 545
HpyAV	CCTTC	4 cut(s)	85, 407, 470, 709
HpyCH4III	ACNGT	2 cut(s)	352, 739
HpyCH4IV	ACGT	5 cut(s)	255, 408, 423, 495, 618
HpyCH4V	TGCA	6 cut(s)	152, 171, 460, 506, 511, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 640
HpyF3I	CTNAG	5 cut(s)	9, 116, 135, 342, 432
HpySE526I	ACGT	5 cut(s)	255, 408, 423, 495, 618
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	4 cut(s)	196, 464, 638, 725
Kpn2I	TCCGGA	1 cut(s)	711
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	296, 489
LweI	GCATC	2 cut(s)	493, 556
MaeI	CTAG	2 cut(s)	230, 576
MaeII	ACGT	5 cut(s)	255, 408, 423, 495, 618
MaeIII	GTNAC	2 cut(s)	256, 365
MalI	GATC	2 cut(s)	298, 491
MboI	GATC	2 cut(s)	296, 489
MboII	GAAGA	6 cut(s)	36, 115, 211, 458, 700, 742
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	306, 579
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	334, 391
MroI	TCCGGA	1 cut(s)	711
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	251, 309
MslI	CAYNNNNRTG	3 cut(s)	100, 372, 596
MspI	CCGG	3 cut(s)	5, 58, 712
Mva1269I	GAATGC	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	92, 640
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	2 cut(s)	296, 489
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	196, 464, 638, 725
NlaIV	GGNNCC	2 cut(s)	298, 588
NmuCI	GTSAC	2 cut(s)	256, 365
NspI	RCATGY	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	721
PceI	AGGCCT	1 cut(s)	146
PctI	GAATGC	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	601
PflFI	GACNNNGTC	2 cut(s)	407, 695
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	298, 588
PspPI	GGNCC	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	296
PsyI	GACNNNGTC	2 cut(s)	407, 695
RseI	CAYNNNNRTG	3 cut(s)	100, 372, 596
SaqAI	TTAA	2 cut(s)	251, 309
Sau3AI	GATC	2 cut(s)	296, 489
Sau96I	GGNCC	1 cut(s)	626
SchI	GAGTC	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	493, 556
SmiMI	CAYNNNNRTG	3 cut(s)	100, 372, 596
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	2 cut(s)	306, 579
SseBI	AGGCCT	1 cut(s)	146
SspMI	CTAG	2 cut(s)	230, 576
StuI	AGGCCT	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	352, 739
TaiI	ACGT	5 cut(s)	258, 411, 426, 498, 621
TaqI	TCGA	4 cut(s)	29, 186, 543, 550
TasI	AATT	2 cut(s)	306, 579
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	2 cut(s)	251, 309
Tru9I	TTAA	2 cut(s)	251, 309
TscAI	CASTG	3 cut(s)	102, 161, 513
TseFI	GTSAC	2 cut(s)	256, 365
Tsp45I	GTSAC	2 cut(s)	256, 365
TspDTI	ATGAA	4 cut(s)	212, 257, 459, 651
TspRI	CASTG	3 cut(s)	102, 161, 513
Tth111I	GACNNNGTC	2 cut(s)	407, 695
XapI	RAATTY	1 cut(s)	579
XceI	RCATGY	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	2 cut(s)	230, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.