Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

540081 .. 541761

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G006000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTTCCAACCATGACCAGCCCTTCAGGTATCACCAACTTTGTTATAAACAATGGCAATGGAGTTAAGGGTCTTTCAGAAATGGGTCTCAAAAGCCTTCCAAAGCAATATATCCAGCCCCTTGAAGAGAGAATTAGCACTGCGAGTTTTGGGATAAAAAACTCCGAAGAGACAGTTCCCATCATCGACATGTCAAACTGGGACGACCCGAAAGTTGCAGAAGCTATTTGCAGTGCAGCAGAGAAGTGGGGGTTTTTTCAACTTGTCAACCATGGGGTGCCCGTTGAAGTGCTTGAGAATGTGAAGGAGGCAACTCATCGCTTCTTTGAGTTGCCAGCTGAGGAGAAGAGTAAGAATTCGAAAGAGCGTTCGTGTTCGAACAATGTCCGGTTTGGGACGAGCTTTAGCCCTCAAGCAGAGAAGGCTTTGGAGTGGAAAGATTACCTTAGTCTCTTCTATGTTTCTGAGGATGAGGCCTCTGCACTTTGGCCTCCTGCCTGCAAGGATGAAGTGCTTGAATACATGAAGAAATCCGAAATTCTCATAAAACGACTCCTAGAGATGCTAATGAAGAGATTAAATGTAAAAGAAATAGACCAAGAAAAAGAAGGTCTTCTAATGGGATCCATGCGGATTAACCTCAACTACTACCCCATTTGCCCAAACCCTGAGCTCACAGTTGGAGTTGGCCGCCACTCCGACGTCTCAACACTCACCGTCCTCCTTCAAGACCAGATTGGCGGCCTTTATGTGCGAGGCGGCACCGACAAGAAGACTTGGATTCATGTCCCTCCGGTGAAGGGGTCGTTGGTGATCAACATTGGTGATGCACTCCAAATCATGAGCAACGGACGATACAAGAGCATCGAGCATCGAGTGGCTGCGAATGGAAGTAAGAACAGGATTTCAGTCCCCATATTTGTCAACCCGAGGCCGTCGGATTTGATCTCTCCGCTGCCGGAAGTGCTTGCAAGTGGGGAGAAAGCAGTGTACAAGCAAGTTCTGTATTCTGATTATGTCAAGCATTTCTTCCGCAAGGCTCATGATGGGAAGAGTACGATTGAGTTTGCCAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

360

Amino Acids

40.19

Weight (kDa)

7.06

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AatII	GACGTC	1 cut(s)	705
AccB1I	GGYRCC	2 cut(s)	277, 761
AciI	CCGC	6 cut(s)	631, 691, 741, 759, 953, 1033
AclWI	GGATC	2 cut(s)	618, 631
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	3 cut(s)	355, 537, 1074
AcuI	CTGAAG	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	2 cut(s)	992, 1057
AfiI	CCNNNNNNNGG	1 cut(s)	800
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	5 cut(s)	125, 260, 287, 518, 728
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	4 cut(s)	224, 338, 402, 673
AluI	AGCT	4 cut(s)	224, 338, 402, 673
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	4 cut(s)	92, 164, 455, 709
AlwI	GGATC	2 cut(s)	618, 631
Ama87I	CYCGRG	1 cut(s)	928
AoxI	GGCC	5 cut(s)	474, 488, 688, 742, 932
ApeKI	GCWGC	3 cut(s)	236, 881, 955
ApoI	RAATTY	3 cut(s)	355, 537, 1074
Asp700I	GAANNNNTTC	1 cut(s)	612
AsuHPI	GGTGA	5 cut(s)	25, 706, 808, 823, 836
AsuII	TTCGAA	2 cut(s)	359, 377
AvaI	CYCGRG	1 cut(s)	928
BaeGI	GKGCMC	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	623
BanI	GGYRCC	2 cut(s)	277, 761
BanII	GRGCYC	1 cut(s)	675
BbsI	GAAGAC	2 cut(s)	605, 779
Bbv12I	GWGCWC	1 cut(s)	675
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	248, 868, 942
BccI	CCATC	2 cut(s)	188, 1040
BceAI	ACGGC	1 cut(s)	919
BclI	TGATCA	1 cut(s)	813
BcoDI	GTCTC	4 cut(s)	92, 164, 455, 709
BfaI	CTAG	1 cut(s)	557
BisI	GCNGC	6 cut(s)	237, 691, 742, 760, 882, 956
BlsI	GCNGC	6 cut(s)	238, 692, 743, 761, 883, 957
BmeT110I	CYCGRG	1 cut(s)	928
BmiI	GGNNCC	4 cut(s)	6, 279, 625, 763
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	4 cut(s)	552, 817, 873, 880
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	2 cut(s)	605, 779
Bpu10I	CCTNAGC	2 cut(s)	339, 669
Bpu14I	TTCGAA	2 cut(s)	359, 377
BpuEI	CTTGAG	2 cut(s)	314, 396
BsaHI	GRCGYC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	271, 929
BsaWI	WCCGGW	2 cut(s)	387, 793
Bsc4I	CCNNNNNNNGG	1 cut(s)	800
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	271, 929
BseGI	GGATG	2 cut(s)	475, 511
BseLI	CCNNNNNNNGG	1 cut(s)	800
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	330, 456, 660
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	248, 868, 942
BsgI	GTGCAG	2 cut(s)	255, 465
BshFI	GGCC	5 cut(s)	476, 490, 690, 744, 934
BshNI	GGYRCC	2 cut(s)	277, 761
BsiHKAI	GWGCWC	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	928
BsiSI	CCGG	3 cut(s)	388, 794, 959
BslFI	GGGAC	4 cut(s)	215, 409, 773, 896
BslI	CCNNNNNNNGG	1 cut(s)	800
BsmAI	GTCTC	4 cut(s)	92, 164, 455, 709
BsmBI	CGTCTC	1 cut(s)	709
BsmFI	GGGAC	4 cut(s)	215, 409, 773, 896
BsnI	GGCC	5 cut(s)	476, 490, 690, 744, 934
Bso31I	GGTCTC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	928
Bsp119I	TTCGAA	2 cut(s)	359, 377
Bsp1286I	GDGCHC	2 cut(s)	282, 675
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	3 cut(s)	623, 813, 945
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	6 cut(s)	631, 691, 741, 759, 953, 1033
BspANI	GGCC	5 cut(s)	476, 490, 690, 744, 934
BspCNI	CTCAG	3 cut(s)	331, 457, 661
BspHI	TCATGA	2 cut(s)	840, 1042
BspLI	GGNNCC	4 cut(s)	6, 279, 625, 763
BspPI	GGATC	2 cut(s)	618, 631
BspT104I	TTCGAA	2 cut(s)	359, 377
BspT107I	GGYRCC	2 cut(s)	277, 761
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	271, 929
BssMI	GATC	3 cut(s)	623, 813, 945
BssNI	GRCGYC	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	271
Bst4CI	ACNGT	3 cut(s)	175, 679, 718
Bst6I	CTCTTC	6 cut(s)	120, 162, 341, 458, 566, 1046
BstACI	GRCGYC	1 cut(s)	702
BstAUI	TGTACA	1 cut(s)	990
BstBI	TTCGAA	2 cut(s)	359, 377
BstC8I	GCNNGC	3 cut(s)	336, 499, 969
BstDEI	CTNAG	4 cut(s)	339, 446, 465, 669
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	475, 511
BstKTI	GATC	3 cut(s)	626, 816, 948
BstMAI	GTCTC	4 cut(s)	92, 164, 455, 709
BstMBI	GATC	3 cut(s)	623, 813, 945
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 964
BstNSI	RCATGY	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	248, 868, 942
BstV2I	GAAGAC	2 cut(s)	605, 779
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuRI	GGCC	5 cut(s)	476, 490, 690, 744, 934
BtgI	CCRYGG	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	475, 511
BtsI	GCAGTG	3 cut(s)	138, 238, 993
BtsIMutI	CAGTG	3 cut(s)	138, 238, 993
Cac8I	GCNNGC	3 cut(s)	336, 499, 969
CciI	TCATGA	2 cut(s)	840, 1042
Csp6I	GTAC	2 cut(s)	991, 1056
CviAII	CATG	8 cut(s)	13, 190, 272, 523, 628, 785, 841, 1043
CviQI	GTAC	2 cut(s)	991, 1056
DdeI	CTNAG	4 cut(s)	339, 446, 465, 669
DpnI	GATC	3 cut(s)	625, 815, 947
DpnII	GATC	3 cut(s)	623, 813, 945
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	6 cut(s)	120, 162, 341, 458, 566, 1046
EarI	CTCTTC	6 cut(s)	120, 162, 341, 458, 566, 1046
Ecl136II	GAGCTC	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	675
Eco31I	GGTCTC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	928
EcoICRI	GAGCTC	1 cut(s)	673
EcoRI	GAATTC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	8 cut(s)	16, 193, 275, 526, 631, 788, 844, 1046
FalI	AAGNNNNNCTT	6 cut(s)	429, 461, 597, 629, 1013, 1045
FaqI	GGGAC	4 cut(s)	215, 409, 773, 896
FatI	CATG	8 cut(s)	12, 189, 271, 522, 627, 784, 840, 1042
FbaI	TGATCA	1 cut(s)	813
Fnu4HI	GCNGC	6 cut(s)	237, 691, 742, 760, 882, 956
FokI	GGATG	2 cut(s)	482, 518
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	6 cut(s)	237, 691, 742, 760, 882, 956
FspBI	CTAG	1 cut(s)	557
GluI	GCNGC	6 cut(s)	237, 691, 742, 760, 882, 956
HaeIII	GGCC	5 cut(s)	476, 490, 690, 744, 934
HapII	CCGG	3 cut(s)	388, 794, 959
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	8 cut(s)	16, 193, 275, 526, 631, 788, 844, 1046
HincII	GTYRAC	2 cut(s)	268, 925
HindII	GTYRAC	2 cut(s)	268, 925
HinfI	GANTC	2 cut(s)	552, 781
HpaII	CCGG	3 cut(s)	388, 794, 959
HphI	GGTGA	5 cut(s)	25, 706, 808, 823, 836
Hpy166II	GTNNAC	3 cut(s)	268, 925, 991
Hpy188I	TCNGA	7 cut(s)	79, 166, 466, 535, 700, 940, 1012
Hpy188III	TCNNGA	3 cut(s)	728, 841, 1043
Hpy8I	GTNNAC	3 cut(s)	268, 925, 991
Hpy99I	CGWCG	2 cut(s)	704, 940
HpyAV	CCTTC	7 cut(s)	33, 107, 298, 415, 602, 734, 793
HpyCH4III	ACNGT	3 cut(s)	175, 679, 718
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	7 cut(s)	218, 231, 236, 482, 501, 830, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 964
HpyF3I	CTNAG	4 cut(s)	339, 446, 465, 669
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	8 cut(s)	16, 193, 275, 526, 631, 788, 844, 1046
Ksp22I	TGATCA	1 cut(s)	813
Kzo9I	GATC	3 cut(s)	623, 813, 945
Lsp1109I	GCAGC	3 cut(s)	248, 868, 942
LweI	GCATC	4 cut(s)	552, 817, 873, 880
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	1 cut(s)	702
MalI	GATC	3 cut(s)	625, 815, 947
MboI	GATC	3 cut(s)	623, 813, 945
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	2 cut(s)	282, 675
MluCI	AATT	4 cut(s)	132, 355, 537, 1074
MlyI	GAGTC	1 cut(s)	546
MmeI	TCCRAC	4 cut(s)	32, 661, 723, 918
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	3 cut(s)	66, 578, 636
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	2 cut(s)	338, 955
MspI	CCGG	3 cut(s)	388, 794, 959
MwoI	GCNNNNNNNGC	2 cut(s)	422, 964
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	3 cut(s)	623, 813, 945
NlaIII	CATG	8 cut(s)	16, 193, 275, 526, 631, 788, 844, 1046
NlaIV	GGNNCC	4 cut(s)	6, 279, 625, 763
NspI	RCATGY	1 cut(s)	193
NspV	TTCGAA	2 cut(s)	359, 377
PagI	TCATGA	2 cut(s)	840, 1042
PceI	AGGCCT	1 cut(s)	476
PciI	ACATGT	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	781
PkrI	GCNGC	6 cut(s)	238, 692, 743, 761, 883, 957
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
PscI	ACATGT	1 cut(s)	189
PsiI	TTATAA	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	675
PspN4I	GGNNCC	4 cut(s)	6, 279, 625, 763
PsuI	RGATCY	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	992, 1057
RsaNI	GTAC	2 cut(s)	991, 1056
RseI	CAYNNNNRTG	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	675
SaqAI	TTAA	3 cut(s)	66, 578, 636
SatI	GCNGC	6 cut(s)	237, 691, 742, 760, 882, 956
Sau3AI	GATC	3 cut(s)	623, 813, 945
SchI	GAGTC	1 cut(s)	546
SduI	GDGCHC	2 cut(s)	282, 675
SetI	ASST	9 cut(s)	31, 226, 340, 404, 447, 613, 642, 675, 705
SfaNI	GCATC	4 cut(s)	552, 817, 873, 880
SfuI	TTCGAA	2 cut(s)	359, 377
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	293, 411
SmoI	CTYRAG	2 cut(s)	293, 411
Sse9I	AATT	4 cut(s)	132, 355, 537, 1074
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	6 cut(s)	631, 691, 741, 759, 953, 1033
SspMI	CTAG	1 cut(s)	557
SstI	GAGCTC	1 cut(s)	675
StuI	AGGCCT	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	175, 679, 718
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	5 cut(s)	186, 359, 377, 867, 874
TasI	AATT	4 cut(s)	132, 355, 537, 1074
TatI	WGTACW	1 cut(s)	990
TauI	GCSGC	3 cut(s)	693, 744, 762
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	3 cut(s)	66, 578, 636
Tru9I	TTAA	3 cut(s)	66, 578, 636
TscAI	CASTG	3 cut(s)	145, 238, 993
TseI	GCWGC	3 cut(s)	236, 881, 955
TspDTI	ATGAA	4 cut(s)	522, 539, 584, 773
TspGWI	ACGGA	1 cut(s)	864
TspRI	CASTG	3 cut(s)	145, 238, 993
XapI	RAATTY	3 cut(s)	355, 537, 1074
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	1 cut(s)	557
ZraI	GACGTC	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.