Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Forward (+)

66314688 .. 66316725

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0481900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGAGATGCAAAAGAGAACCCCGAGAGGTCAGAGATTGGTCCTAGTTCCAACTCCATACCAAGGCCACATAAACCCAATGCTTCAGTTGGGTACGTTTCTTCACTCAAAGGGATTTTCCATTACCATCGTTCACACCCATTTCAACTCTCCAAGCCCTTCCAACCACCCTGAGTTCACATTCATTCCGATTCAAGACGGCCTAACTGTTCCTCTAGTCTCATCCGGGAATATAATAGCTATTCTGTTGGCTCTCAATGCCAATTGCAAAGCGAGTTTCGAACAATGTTTGACTACTCAAGTAATGAAACAAGAACCGGAGAAGATCACCTGCATCATCTACGATGAATTCATGTACTTCTCTGAAGCTGCTGCTAATTATCTGAAGATTCCAAGCATCATCCTCCGTACTACCAGTGCAGCCAACTTTCATGCTCGATCTACTGTCGTAGAACTTCATTCAAAAGGCCACATTCCCTTCCCAGAGTCTATGTCATCGGAGCCGGTGCCCCAACTTCATCCCCTCAGATTCAAGGATCTGCCCATCTCACCCTGGGACACGTTAGAAAACTTCTTAAAACTAGTAGTTAAGTCACATGATGTTGGGAGATCTTCGGCCATCATTTGTAATACCATAGACTGCCTTGACCAATCATCACTAGCACGGATCCAAAAACATTGCCAAGTACCGATCTTCTGCATAGGCCCTCTTCACAAAATCACAACAGCGGCCTCTAGTAGTTTACTTGAAGAGGACACAAGCTGCATTGAGTGGCTTGACAAGCAATCTCACAAGTCAGTTATCTATGTCAGTTTGGGGAGTATAGCATCCATTGGTGAGAAAGAACTGGCAGAAATGGCTTGGGGATTAGCCAACAGCAAACAACCTTTTTTGTGGGTGATCAGACCTGGCTCCATTACCGGCTCAGATTGGATCGAGCTATTGCCTCAAGAGTTTAGAGAAGCTATTGGAGAAAGAGGTTTCATAGTGAAATGGGCACCCCAAAGGGAAGTTTTGGCTCATGGTGCTGTGGGCGCGTTTTGGACCCATTGTGGCTGGAATTCAACTCTTGAAAGCATATCTGAAGGGGTTCCGATGATTTGCAAACCATGTTTTAGTGATCAGAAGGTGCATGCGAGGTATGTTAGCGAAGTATGGAGACTAGGTTTAGAATTGGAGGATGAGTTTGAGAGAGGAGAGATAGAGAGAGCTGTTAGGAAACTCATGGTAAATAGTGATGGGGAAGAAATAAGGGCGAGGGCCAAGGATATGAAAGAGAAAATACAAGTTTCTATGAGCAAGGGTGGATCTAACTACAATTTCTTGAATGAACTTGTGGAATTCATCATGGCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

452

Amino Acids

50.72

Weight (kDa)

6.16

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	261 - 411	1.3e-27	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
AccB1I	GGYRCC	2 cut(s)	505, 997
AccII	CGCG	1 cut(s)	1037
AciI	CCGC	1 cut(s)	728
AclWI	GGATC	5 cut(s)	543, 661, 674, 941, 1315
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	3 cut(s)	347, 1060, 1340
AcuI	CTGAAG	4 cut(s)	68, 384, 404, 1104
AfaI	GTAC	4 cut(s)	94, 356, 409, 687
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	8 cut(s)	145, 194, 462, 532, 749, 1065, 1073, 1327
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	2 cut(s)	551, 907
AluBI	AGCT	6 cut(s)	239, 368, 762, 940, 965, 1211
AluI	AGCT	6 cut(s)	239, 368, 762, 940, 965, 1211
Alw26I	GTCTC	2 cut(s)	223, 1153
AlwI	GGATC	5 cut(s)	543, 661, 674, 941, 1315
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	7 cut(s)	64, 199, 466, 615, 703, 729, 1260
ApeKI	GCWGC	4 cut(s)	368, 371, 419, 762
ApoI	RAATTY	3 cut(s)	347, 1060, 1340
Asp700I	GAANNNNTTC	1 cut(s)	1089
AspLEI	GCGC	1 cut(s)	1037
AspS9I	GGNCC	4 cut(s)	40, 704, 1044, 1260
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	4 cut(s)	319, 540, 848, 910
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	40, 1044
BaeGI	GKGCMC	2 cut(s)	510, 1000
BamHI	GGATCC	1 cut(s)	666
BanI	GGYRCC	2 cut(s)	505, 997
BbvI	GCAGC	4 cut(s)	355, 358, 431, 749
BccI	CCATC	4 cut(s)	134, 551, 626, 1232
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	553, 909
BclI	TGATCA	2 cut(s)	900, 1120
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	223, 1153
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	6 cut(s)	44, 215, 581, 659, 735, 1163
BfuAI	ACCTGC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	5 cut(s)	369, 372, 420, 729, 763
BlsI	GCNGC	5 cut(s)	370, 373, 421, 730, 764
Bme1390I	CCNGG	3 cut(s)	226, 553, 909
Bme18I	GGWCC	2 cut(s)	40, 1044
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	40, 704, 1044, 1260
BmiI	GGNNCC	7 cut(s)	501, 507, 668, 913, 999, 1046, 1092
BmrFI	CCNGG	3 cut(s)	226, 553, 909
BmsI	GCATC	3 cut(s)	342, 405, 836
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	282, 933
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	4 cut(s)	61, 551, 552, 1263
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	4 cut(s)	1150, 1169, 1180, 1199
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	2 cut(s)	502, 920
Bse1I	ACTGG	2 cut(s)	414, 852
Bse3DI	GCAATG	1 cut(s)	676
BseBI	CCWGG	2 cut(s)	553, 909
BseDI	CCNNGG	4 cut(s)	61, 551, 552, 1263
BseGI	GGATG	5 cut(s)	221, 399, 517, 827, 1186
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	3 cut(s)	162, 538, 939
BseNI	ACTGG	2 cut(s)	414, 852
BseRI	GAGGAG	1 cut(s)	1209
BseSI	GKGCMC	2 cut(s)	510, 1000
BseXI	GCAGC	4 cut(s)	355, 358, 431, 749
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	1037
BshFI	GGCC	7 cut(s)	66, 201, 468, 617, 705, 731, 1262
BshNI	GGYRCC	2 cut(s)	505, 997
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	4 cut(s)	225, 317, 503, 921
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	223, 1153
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	1352
BsnI	GGCC	7 cut(s)	66, 201, 468, 617, 705, 731, 1262
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	510, 1000
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	7 cut(s)	66, 201, 468, 617, 705, 731, 1262
BspCNI	CTCAG	3 cut(s)	163, 537, 938
BspFNI	CGCG	1 cut(s)	1037
BspLI	GGNNCC	7 cut(s)	501, 507, 668, 913, 999, 1046, 1092
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	5 cut(s)	543, 661, 674, 941, 1315
BspT104I	TTCGAA	1 cut(s)	279
BspT107I	GGYRCC	2 cut(s)	505, 997
BsrDI	GCAATG	1 cut(s)	676
BsrFI	RCCGGY	2 cut(s)	502, 920
BsrI	ACTGG	2 cut(s)	414, 852
BssAI	RCCGGY	2 cut(s)	502, 920
BssECI	CCNNGG	4 cut(s)	61, 551, 552, 1263
BssT1I	CCWWGG	2 cut(s)	61, 1263
Bst2UI	CCWGG	2 cut(s)	553, 909
Bst4CI	ACNGT	2 cut(s)	208, 445
Bst6I	CTCTTC	2 cut(s)	714, 744
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	1134
BstDEI	CTNAG	3 cut(s)	171, 524, 925
BstF5I	GGATG	5 cut(s)	221, 399, 517, 827, 1186
BstFNI	CGCG	1 cut(s)	1037
BstHHI	GCGC	1 cut(s)	1037
BstMAI	GTCTC	2 cut(s)	223, 1153
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 781, 857, 1025, 1034
BstNI	CCWGG	2 cut(s)	553, 909
BstNSI	RCATGY	1 cut(s)	1136
BstSCI	CCNGG	3 cut(s)	224, 551, 907
BstSLI	GKGCMC	2 cut(s)	510, 1000
BstUI	CGCG	1 cut(s)	1037
BstV1I	GCAGC	4 cut(s)	355, 358, 431, 749
BstX2I	RGATCY	4 cut(s)	535, 608, 666, 1307
BstYI	RGATCY	4 cut(s)	535, 608, 666, 1307
BsuRI	GGCC	7 cut(s)	66, 201, 468, 617, 705, 731, 1262
BtsCI	GGATG	5 cut(s)	221, 399, 517, 827, 1186
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	1134
CfoI	GCGC	1 cut(s)	1037
Cfr10I	RCCGGY	2 cut(s)	502, 920
Cfr13I	GGNCC	4 cut(s)	40, 704, 1044, 1260
Csp6I	GTAC	4 cut(s)	93, 355, 408, 686
CviAII	CATG	8 cut(s)	352, 431, 596, 1022, 1110, 1133, 1225, 1348
CviQI	GTAC	4 cut(s)	93, 355, 408, 686
DdeI	CTNAG	3 cut(s)	171, 524, 925
EaeI	YGGCCR	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	714, 744
EarI	CTCTTC	2 cut(s)	714, 744
Eco130I	CCWWGG	2 cut(s)	61, 1263
Eco47I	GGWCC	2 cut(s)	40, 1044
Eco57I	CTGAAG	4 cut(s)	68, 384, 404, 1104
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	704
EcoRI	GAATTC	3 cut(s)	347, 1060, 1340
EcoRII	CCWGG	2 cut(s)	551, 907
EcoT14I	CCWWGG	2 cut(s)	61, 1263
ErhI	CCWWGG	2 cut(s)	61, 1263
FaeI	CATG	8 cut(s)	355, 434, 599, 1025, 1113, 1136, 1228, 1351
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	8 cut(s)	351, 430, 595, 1021, 1109, 1132, 1224, 1347
FbaI	TGATCA	2 cut(s)	900, 1120
Fnu4HI	GCNGC	5 cut(s)	369, 372, 420, 729, 763
FokI	GGATG	5 cut(s)	208, 386, 504, 814, 1193
Fsp4HI	GCNGC	5 cut(s)	369, 372, 420, 729, 763
FspBI	CTAG	6 cut(s)	44, 215, 581, 659, 735, 1163
GlaI	GCGC	1 cut(s)	1036
GluI	GCNGC	5 cut(s)	369, 372, 420, 729, 763
HaeIII	GGCC	7 cut(s)	66, 201, 468, 617, 705, 731, 1262
HapII	CCGG	4 cut(s)	225, 317, 503, 921
HhaI	GCGC	1 cut(s)	1037
Hin1II	CATG	8 cut(s)	355, 434, 599, 1025, 1113, 1136, 1228, 1351
Hin6I	GCGC	1 cut(s)	1035
HinP1I	GCGC	1 cut(s)	1035
HinfI	GANTC	4 cut(s)	190, 388, 485, 528
HpaII	CCGG	4 cut(s)	225, 317, 503, 921
HphI	GGTGA	4 cut(s)	319, 540, 848, 910
Hpy166II	GTNNAC	3 cut(s)	133, 177, 743
Hpy188III	TCNNGA	4 cut(s)	194, 950, 1070, 1324
Hpy8I	GTNNAC	3 cut(s)	133, 177, 743
HpyAV	CCTTC	4 cut(s)	168, 487, 1079, 1120
HpyCH4III	ACNGT	2 cut(s)	208, 445
HpyCH4IV	ACGT	2 cut(s)	95, 560
HpyCH4V	TGCA	8 cut(s)	10, 267, 333, 419, 699, 765, 1104, 1132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 781, 857, 1025, 1034
HpyF3I	CTNAG	3 cut(s)	171, 524, 925
HpySE526I	ACGT	2 cut(s)	95, 560
Hsp92II	CATG	8 cut(s)	355, 434, 599, 1025, 1113, 1136, 1228, 1351
HspAI	GCGC	1 cut(s)	1035
Ksp22I	TGATCA	2 cut(s)	900, 1120
LmnI	GCTCC	2 cut(s)	499, 917
Lsp1109I	GCAGC	4 cut(s)	355, 358, 431, 749
LweI	GCATC	3 cut(s)	342, 405, 836
MaeI	CTAG	6 cut(s)	44, 215, 581, 659, 735, 1163
MaeII	ACGT	2 cut(s)	95, 560
MaeIII	GTNAC	1 cut(s)	591
MboII	GAAGA	8 cut(s)	92, 334, 397, 603, 685, 701, 761, 1256
MfeI	CAATTG	1 cut(s)	262
MflI	RGATCY	4 cut(s)	535, 608, 666, 1307
MhlI	GDGCHC	2 cut(s)	510, 1000
MluCI	AATT	7 cut(s)	262, 347, 376, 1060, 1172, 1318, 1340
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	2 cut(s)	74, 186
MroXI	GAANNNNTTC	1 cut(s)	1089
MseI	TTAA	2 cut(s)	575, 588
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	4 cut(s)	225, 317, 503, 921
MspR9I	CCNGG	3 cut(s)	226, 553, 909
MunI	CAATTG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	1352
MvaI	CCWGG	2 cut(s)	553, 909
MvnI	CGCG	1 cut(s)	1037
MwoI	GCNNNNNNNGC	5 cut(s)	257, 781, 857, 1025, 1034
NciI	CCSGG	1 cut(s)	226
NlaIII	CATG	8 cut(s)	355, 434, 599, 1025, 1113, 1136, 1228, 1351
NlaIV	GGNNCC	7 cut(s)	501, 507, 668, 913, 999, 1046, 1092
NmuCI	GTSAC	1 cut(s)	591
NspI	RCATGY	1 cut(s)	1136
NspV	TTCGAA	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	1136
PaqCI	CACCTGC	1 cut(s)	338
PasI	CCCWGGG	1 cut(s)	552
PctI	GAATGC	1 cut(s)	1352
PdmI	GAANNNNTTC	1 cut(s)	1089
PfeI	GAWTC	3 cut(s)	190, 388, 528
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	370, 373, 421, 730, 764
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Psp6I	CCWGG	2 cut(s)	551, 907
PspGI	CCWGG	2 cut(s)	551, 907
PspN4I	GGNNCC	7 cut(s)	501, 507, 668, 913, 999, 1046, 1092
PspPI	GGNCC	4 cut(s)	40, 704, 1044, 1260
PsuI	RGATCY	4 cut(s)	535, 608, 666, 1307
RsaI	GTAC	4 cut(s)	94, 356, 409, 687
RsaNI	GTAC	4 cut(s)	93, 355, 408, 686
SaqAI	TTAA	2 cut(s)	575, 588
SatI	GCNGC	5 cut(s)	369, 372, 420, 729, 763
Sau96I	GGNCC	4 cut(s)	40, 704, 1044, 1260
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	226, 553, 909
SduI	GDGCHC	2 cut(s)	510, 1000
SfaNI	GCATC	3 cut(s)	342, 405, 836
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	2 cut(s)	40, 1044
SmlI	CTYRAG	2 cut(s)	297, 948
SmoI	CTYRAG	2 cut(s)	297, 948
SpeI	ACTAGT	1 cut(s)	580
SphI	GCATGC	1 cut(s)	1136
Sse9I	AATT	7 cut(s)	262, 347, 376, 1060, 1172, 1318, 1340
SsiI	CCGC	1 cut(s)	728
SspMI	CTAG	6 cut(s)	44, 215, 581, 659, 735, 1163
StyD4I	CCNGG	3 cut(s)	224, 551, 907
StyI	CCWWGG	2 cut(s)	61, 1263
TaaI	ACNGT	2 cut(s)	208, 445
TaiI	ACGT	2 cut(s)	98, 563
TaqI	TCGA	3 cut(s)	279, 436, 936
TasI	AATT	7 cut(s)	262, 347, 376, 1060, 1172, 1318, 1340
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	3 cut(s)	190, 388, 528
Tru1I	TTAA	2 cut(s)	575, 588
Tru9I	TTAA	2 cut(s)	575, 588
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	591
TseI	GCWGC	4 cut(s)	368, 371, 419, 762
Tsp45I	GTSAC	1 cut(s)	591
TspGWI	ACGGA	2 cut(s)	395, 679
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	40, 1044
XapI	RAATTY	3 cut(s)	347, 1060, 1340
XceI	RCATGY	1 cut(s)	1136
XmnI	GAANNNNTTC	1 cut(s)	1089
XspI	CTAG	6 cut(s)	44, 215, 581, 659, 735, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.