Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

1785556 .. 1787212

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCACCATCTATAAGCCAAACCATCACAGACCCTTCAGATCTCACTGATTTTGTCATAAACAAAGGCAATGGAGTAAAGGGTCTTTCCCAAATGGGACTCAACAGCCTCCCAAAGCAATATATCCAACCCCTTGAAGAAAGAATGAGTATGAATATGACAAAAATGCCTGAAGAATCCATTCCCATCATTGACATGTCAAACTGGGAAGACCCGAAAGTGGCAGAATCAATTTGCAATGCGGCAGAGAAGTGGGGGTTCTTTCAGCTACTCAACCATGGTGTGCCCATTGAAGTCCTTGAGCATGTCAAGGAAGCAACTCACAAGTTTTTTGAGATGCCAGCTGAGGAGAAGTGTAAGTTCTCGAAAGAGCATTCGTCTTCAAACAATGTCCGGTTTGGGACAAGCTTTAGTCCTGAAGCAGAGAAGGCACTGGAGTGGAAAGACTGGCTTAGTCTCTTCTACGTTTCTGAGGATGAGGCCTCTGCACACTGGCCTCCAGTTTGCAAGGCTGAAGTGCTCGAATACATGAAGAGGACACACATACTCATAAAACGACTCCTAGAGATACTGATGAAAAGGTTAAACGTGACAGAAATAGACGCAACCAAAGAACCAATTCTAATGGGATCCAAGCGAATTAACCTCAACTACTACCCCGTTTGCCCAAACCCTGAGCTGACAGTTGGAGTTGGGCGTCACTCTGATGTCTCCACACTCACAATCCTCCTTCAAGACTACATCGGAGGGCTTTACGTCCGAGCTGAGACTACTGATGAAGATAGCTGGGTGCATGTTCCTCCATTGGAAGGGCCATCGGACGTGATAGGGCCTCTGCCTGAAGTGCTTGAGAGTAGTGGGGAGAAAGCATTGTATAAGCAAGTTCTGTATTCTGACTATGTCAGGCATTTCTTCCGGAAGGCTCATGATGGGAAGAGTTCAGTTGACTTTGCCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

320

Amino Acids

36.28

Weight (kDa)

5.3

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 162	4e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 270	3.1e-11	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccIII	TCCGGA	1 cut(s)	915
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	624, 637
AcuI	CTGAAG	5 cut(s)	21, 192, 438, 534, 861
AcyI	GRCGYC	1 cut(s)	697
AfiI	CCNNNNNNNGG	2 cut(s)	220, 809
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	137, 293, 384, 734
AjiI	CACGTC	1 cut(s)	823
AleI	CACNNNNGTG	1 cut(s)	436
AluBI	AGCT	6 cut(s)	268, 344, 408, 679, 764, 786
AluI	AGCT	6 cut(s)	268, 344, 408, 679, 764, 786
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	3 cut(s)	461, 715, 761
AlwI	GGATC	2 cut(s)	624, 637
Aor13HI	TCCGGA	1 cut(s)	915
AoxI	GGCC	4 cut(s)	480, 494, 812, 830
Asp700I	GAANNNNTTC	2 cut(s)	180, 618
AspS9I	GGNCC	2 cut(s)	812, 830
BaeGI	GKGCMC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	216, 372
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	345
BccI	CCATC	5 cut(s)	16, 32, 194, 823, 923
BcoDI	GTCTC	3 cut(s)	461, 715, 761
BfaI	CTAG	1 cut(s)	563
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	823
BmgT120I	GGNCC	2 cut(s)	812, 830
BmiI	GGNNCC	2 cut(s)	6, 631
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	2 cut(s)	216, 372
BpmI	CTGGAG	2 cut(s)	455, 483
Bpu10I	CCTNAGC	2 cut(s)	345, 675
BpuEI	CTTGAG	2 cut(s)	320, 869
BsaHI	GRCGYC	1 cut(s)	697
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	2 cut(s)	393, 915
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 809
Bse1I	ACTGG	5 cut(s)	209, 438, 452, 497, 500
Bse3DI	GCAATG	2 cut(s)	76, 244
BseAI	TCCGGA	1 cut(s)	915
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	220, 809
BseMI	GCAATG	2 cut(s)	76, 244
BseMII	CTCAG	4 cut(s)	336, 462, 666, 756
BseNI	ACTGG	5 cut(s)	209, 438, 452, 497, 500
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	786
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	482, 496, 814, 832
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	394, 916
BslFI	GGGAC	2 cut(s)	111, 415
BslI	CCNNNNNNNGG	2 cut(s)	220, 809
BsmAI	GTCTC	3 cut(s)	461, 715, 761
BsmFI	GGGAC	2 cut(s)	111, 415
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	482, 496, 814, 832
Bsp1286I	GDGCHC	2 cut(s)	288, 522
Bsp13I	TCCGGA	1 cut(s)	915
Bsp143I	GATC	2 cut(s)	40, 629
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	4 cut(s)	482, 496, 814, 832
BspCNI	CTCAG	4 cut(s)	337, 463, 667, 757
BspEI	TCCGGA	1 cut(s)	915
BspHI	TCATGA	1 cut(s)	925
BspLI	GGNNCC	2 cut(s)	6, 631
BspPI	GGATC	2 cut(s)	624, 637
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	76, 244
BsrI	ACTGG	5 cut(s)	209, 438, 452, 497, 500
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	40, 629
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	3 cut(s)	464, 527, 929
BstACI	GRCGYC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	5 cut(s)	345, 452, 471, 675, 765
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	2 cut(s)	43, 632
BstMAI	GTCTC	3 cut(s)	461, 715, 761
BstMBI	GATC	2 cut(s)	40, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 844
BstNSI	RCATGY	3 cut(s)	199, 308, 797
BstSLI	GKGCMC	1 cut(s)	288
BstV2I	GAAGAC	2 cut(s)	216, 372
BstX2I	RGATCY	2 cut(s)	40, 629
BstYI	RGATCY	2 cut(s)	40, 629
BsuRI	GGCC	4 cut(s)	482, 496, 814, 832
BtgI	CCRYGG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	823
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	45, 431, 490
Cac8I	GCNNGC	1 cut(s)	342
CciI	TCATGA	1 cut(s)	925
Cfr13I	GGNCC	2 cut(s)	812, 830
CseI	GACGC	2 cut(s)	611, 686
CviAII	CATG	6 cut(s)	196, 278, 305, 529, 794, 926
DdeI	CTNAG	5 cut(s)	345, 452, 471, 675, 765
DpnI	GATC	2 cut(s)	42, 631
DpnII	GATC	2 cut(s)	40, 629
Eam1104I	CTCTTC	3 cut(s)	464, 527, 929
EarI	CTCTTC	3 cut(s)	464, 527, 929
Eco130I	CCWWGG	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	482
Eco57I	CTGAAG	5 cut(s)	21, 192, 438, 534, 861
EcoO109I	RGGNCCY	1 cut(s)	830
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	6 cut(s)	199, 281, 308, 532, 797, 929
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	2 cut(s)	111, 415
FatI	CATG	6 cut(s)	195, 277, 304, 528, 793, 925
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	790
GsuI	CTGGAG	2 cut(s)	455, 483
HaeIII	GGCC	4 cut(s)	482, 496, 814, 832
HapII	CCGG	2 cut(s)	394, 916
HgaI	GACGC	2 cut(s)	611, 686
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	6 cut(s)	199, 281, 308, 532, 797, 929
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	4 cut(s)	99, 176, 227, 558
HpaII	CCGG	2 cut(s)	394, 916
Hpy166II	GTNNAC	1 cut(s)	946
Hpy188I	TCNGA	8 cut(s)	40, 472, 706, 746, 761, 820, 895, 962
Hpy188III	TCNNGA	5 cut(s)	364, 416, 734, 916, 926
Hpy8I	GTNNAC	1 cut(s)	946
HpyAV	CCTTC	5 cut(s)	45, 421, 740, 803, 913
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4IV	ACGT	4 cut(s)	465, 588, 756, 822
HpyCH4V	TGCA	4 cut(s)	237, 488, 507, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 844
HpyF3I	CTNAG	5 cut(s)	345, 452, 471, 675, 765
HpySE526I	ACGT	4 cut(s)	465, 588, 756, 822
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	6 cut(s)	199, 281, 308, 532, 797, 929
Kpn2I	TCCGGA	1 cut(s)	915
Kzo9I	GATC	2 cut(s)	40, 629
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	4 cut(s)	465, 588, 756, 822
MaeIII	GTNAC	2 cut(s)	589, 698
MalI	GATC	2 cut(s)	42, 631
MboI	GATC	2 cut(s)	40, 629
MboII	GAAGA	9 cut(s)	149, 185, 221, 372, 451, 544, 791, 904, 946
MflI	RGATCY	2 cut(s)	40, 629
MhlI	GDGCHC	2 cut(s)	288, 522
MluCI	AATT	3 cut(s)	231, 618, 639
MlyI	GAGTC	2 cut(s)	93, 552
MmeI	TCCRAC	2 cut(s)	151, 667
MroI	TCCGGA	1 cut(s)	915
MroXI	GAANNNNTTC	2 cut(s)	180, 618
MseI	TTAA	2 cut(s)	584, 642
MslI	CAYNNNNRTG	3 cut(s)	194, 436, 705
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	2 cut(s)	394, 916
Mva1269I	GAATGC	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	428, 844
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	2 cut(s)	40, 629
NlaIII	CATG	6 cut(s)	199, 281, 308, 532, 797, 929
NlaIV	GGNNCC	2 cut(s)	6, 631
NmuCI	GTSAC	2 cut(s)	589, 698
NspI	RCATGY	3 cut(s)	199, 308, 797
OliI	CACNNNNGTG	1 cut(s)	436
PagI	TCATGA	1 cut(s)	925
PceI	AGGCCT	1 cut(s)	482
PciI	ACATGT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	2 cut(s)	180, 618
PfeI	GAWTC	2 cut(s)	176, 227
PflFI	GACNNNGTC	1 cut(s)	899
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	93, 552
PpsI	GAGTC	2 cut(s)	93, 552
PscI	ACATGT	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	786
PspN4I	GGNNCC	2 cut(s)	6, 631
PspPI	GGNCC	2 cut(s)	812, 830
PsuI	RGATCY	2 cut(s)	40, 629
PsyI	GACNNNGTC	1 cut(s)	899
PvuII	CAGCTG	1 cut(s)	344
RseI	CAYNNNNRTG	3 cut(s)	194, 436, 705
SaqAI	TTAA	2 cut(s)	584, 642
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	40, 629
Sau96I	GGNCC	2 cut(s)	812, 830
SchI	GAGTC	2 cut(s)	93, 552
SduI	GDGCHC	2 cut(s)	288, 522
SfaNI	GCATC	1 cut(s)	327
SmiMI	CAYNNNNRTG	3 cut(s)	194, 436, 705
SmlI	CTYRAG	2 cut(s)	299, 848
SmoI	CTYRAG	2 cut(s)	299, 848
Sse9I	AATT	3 cut(s)	231, 618, 639
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	563
StuI	AGGCCT	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	685
TaiI	ACGT	4 cut(s)	468, 591, 759, 825
TaqI	TCGA	2 cut(s)	365, 522
TasI	AATT	3 cut(s)	231, 618, 639
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	176, 227
Tru1I	TTAA	2 cut(s)	584, 642
Tru9I	TTAA	2 cut(s)	584, 642
TscAI	CASTG	3 cut(s)	52, 438, 497
TseFI	GTSAC	2 cut(s)	589, 698
Tsp45I	GTSAC	2 cut(s)	589, 698
TspDTI	ATGAA	4 cut(s)	167, 545, 590, 792
TspRI	CASTG	3 cut(s)	52, 438, 497
Tth111I	GACNNNGTC	1 cut(s)	899
XceI	RCATGY	3 cut(s)	199, 308, 797
XmnI	GAANNNNTTC	2 cut(s)	180, 618
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.