Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003727.1

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Reverse (-)

57572 .. 58039

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003727.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgggatccaagcgaattaacctcaactactaccccgtttgcccaaaccctgagctgacagttggagttgggcgtcactctgatgtctccacactcacaatcctccttcaagactacattggagggctttacgtccgagctgagactactgatgaagatacctggatgcatgttcctccattggatgggtcattagtgatcaacgttggtgatgcactgcaaataatgagcaatggaaaatacaagagcgtcgagcatcgagtggttgctaatggaagtaagactagaatttcggttcccatatttgtgaatccgaggccatcggacgtaatagggcctctgcctgaagtgcttgagagtagtggggagaaaccattgtataagcaagttctgtattctgactatgtcaggcatttcttccggaaggctcatgatgggaagagtacagttgacgttgccaaaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

6.96

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	420
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	73
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	55, 140
AluI	AGCT	2 cut(s)	55, 140
Alw26I	GTCTC	2 cut(s)	91, 137
AlwI	GGATC	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	2 cut(s)	317, 335
ApoI	RAATTY	1 cut(s)	288
ArsI	GACNNNNNNTTYG	2 cut(s)	274, 306
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	5
BccI	CCATC	3 cut(s)	179, 328, 428
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	91, 137
BfaI	CTAG	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	7, 297
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	3 cut(s)	156, 202, 265
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	314
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	171, 190
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	42, 132
BshFI	GGCC	2 cut(s)	319, 337
BsiSI	CCGG	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	91, 137
BsnI	GGCC	2 cut(s)	319, 337
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	5, 198
BspANI	GGCC	2 cut(s)	319, 337
BspCNI	CTCAG	2 cut(s)	43, 133
BspEI	TCCGGA	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	7, 297
BspPI	GGATC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	2 cut(s)	5, 198
BssNI	GRCGYC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	61, 448
Bst6I	CTCTTC	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	51, 141
BstF5I	GGATG	2 cut(s)	171, 190
BstKTI	GATC	2 cut(s)	8, 201
BstMAI	GTCTC	2 cut(s)	91, 137
BstMBI	GATC	2 cut(s)	5, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	2 cut(s)	319, 337
BtsCI	GGATG	2 cut(s)	171, 190
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	335
CseI	GACGC	2 cut(s)	62, 238
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	2 cut(s)	170, 431
CviJI	RGCY	6 cut(s)	55, 127, 140, 319, 337, 428
CviKI_1	RGCY	6 cut(s)	55, 127, 140, 319, 337, 428
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	2 cut(s)	51, 141
DpnI	GATC	2 cut(s)	7, 200
DpnII	GATC	2 cut(s)	5, 198
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	171
FaeI	CATG	2 cut(s)	173, 434
FaiI	YATR	5 cut(s)	171, 302, 381, 405, 432
FatI	CATG	2 cut(s)	169, 430
FbaI	TGATCA	1 cut(s)	198
FokI	GGATG	2 cut(s)	178, 197
FspBI	CTAG	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	319, 337
HapII	CCGG	1 cut(s)	421
HgaI	GACGC	2 cut(s)	62, 238
Hin1I	GRCGYC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	173, 434
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	6 cut(s)	82, 137, 315, 325, 400, 467
Hpy188III	TCNNGA	3 cut(s)	110, 421, 431
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	116, 418
HpyCH4III	ACNGT	2 cut(s)	61, 448
HpyCH4IV	ACGT	4 cut(s)	132, 204, 327, 453
HpyCH4V	TGCA	3 cut(s)	169, 215, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	2 cut(s)	51, 141
HpySE526I	ACGT	4 cut(s)	132, 204, 327, 453
Hsp92I	GRCGYC	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	173, 434
Kpn2I	TCCGGA	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	5, 198
LpnPI	CCDG	6 cut(s)	63, 148, 175, 357, 394, 434
LweI	GCATC	3 cut(s)	156, 202, 265
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	4 cut(s)	132, 204, 327, 453
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	7, 200
MboI	GATC	2 cut(s)	5, 198
MboII	GAAGA	3 cut(s)	167, 409, 451
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	2 cut(s)	15, 288
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	6 cut(s)	32, 113, 116, 186, 309, 348
Mph1103I	ATGCAT	1 cut(s)	171
MroI	TCCGGA	1 cut(s)	420
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	2 cut(s)	81, 305
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	2 cut(s)	5, 198
NlaIII	CATG	2 cut(s)	173, 434
NlaIV	GGNNCC	2 cut(s)	7, 297
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	1 cut(s)	173
PagI	TCATGA	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	185
Psp1406I	AACGTT	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	7, 297
PspPI	GGNCC	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	5
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	2 cut(s)	81, 305
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	5, 198
Sau96I	GGNCC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	8 cut(s)	24, 57, 135, 142, 164, 207, 330, 456
SfaNI	GCATC	3 cut(s)	156, 202, 265
SmiMI	CAYNNNNRTG	2 cut(s)	81, 305
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	2 cut(s)	15, 288
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	61, 448
TaiI	ACGT	4 cut(s)	135, 207, 330, 456
TaqI	TCGA	2 cut(s)	252, 259
TasI	AATT	2 cut(s)	15, 288
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	404
Van91I	CCANNNNNTGG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	288
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.