Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004021

Physical Location & Seq

Genomic Coordinates Forward (+)

88806903 .. 88807469

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGAGGACAGACATACTCATAAAACGACTCCTAGATATACTGATGAAAAGGCTAAACGTGACAGAAATAAACACAACCAAAGAACCACTTCTAATGGGATCCAGGCGAATTAACCTTAATTACTTCCCCGTTTGCCCAAACCCTGAGCTGACAGTTGGAGTTGGGCGTCACTCTGATGTCTCCACACTCACAATCCTCCTTCAAGAGTACTACATCGGAGGGCTTTACGTCCGACCTGAGTTTACTGATGAAGATACCTGGGTGCATGTTCCTCCATTGGAAGGGTCATTAGTGATCAACGTTGGCGATGCACTGCAAATAATGAGCAATGGAAAATACAAGAGCGTCGAGCATCGAGTGGCTGCTAATGGAAGTAAGACTAGAATTTCGGTTCCCATATTTGTGAATCCGAGGCCATCGGACGTGATAGGGCCTCTGCATGAAGTGCTTGAGAGTAGTGGGGAGAAACCATTGTATAAGCAAGTTCTGTATTCTGACTATGTCAAGCATTTCTTCCGGAAGGCTCATGATGGGAAGAGTACGGTTGACTTCGCCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010421 GO:0012501 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046677 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:0097468 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00940 ko01110 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map00940 map01110 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

188

Amino Acids

21.28

Weight (kDa)

8.91

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	39 - 138	1.2e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55290 AT3G13610
fragaria_vesca	FvH4_3g45310
malus_domestica	MD03G1006400.v1.1 MD15G1313900.v1.1
prunus_persica	Prupe.6G006000_v2.0.a1
pyrus_communis	pycom03g00660
rosa_chinensis	RchiOBHm_Chr5g0082981 RchiOBHm_Chr5g0082991 RchiOBHm_Chr5g0083061 RchiOBHm_Chr5g0083081
rosa_laevigata	RLG00000028679 RLG00000037007 RLG00000037009
rosa_multiflora	Rmu_sc0003727.1_g000002 Rmu_sc0003727.1_g000007 Rmu_sc0003727.1_g000008
rosa_roxburghii	Rroxscaffold_1G00001420 Rroxscaffold_1G00001430 Rroxscaffold_1G00001440
rosa_rugosa	Rorug05G0481900
rosa_samantha	Rh5AG531500 Rh5AG531600 Rh5BG558600 Rh5BG558700 Rh5CG581500 Rh5CG581600 Rh5DG567300 Rh5DG567400 Rh5DG567600
rosa_wichuraiana	Rw5G049670 Rw5G049700 Rw5G049710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	519
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	2 cut(s)	96, 109
AcsI	RAATTY	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	2 cut(s)	212, 544
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	206
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	104, 260
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	2 cut(s)	96, 109
Aor13HI	TCCGGA	1 cut(s)	519
AoxI	GGCC	2 cut(s)	416, 434
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	387
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
Asp700I	GAANNNNTTC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	434
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BamHI	GGATCC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	2 cut(s)	427, 527
BciT130I	CCWGG	2 cut(s)	106, 262
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	35, 384
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	106, 262
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	103, 396
BmrFI	CCNGG	2 cut(s)	106, 262
BmsI	GCATC	2 cut(s)	301, 364
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	261, 413
BsaWI	WCCGGW	1 cut(s)	519
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	337
BseAI	TCCGGA	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	106, 262
BseDI	CCNNGG	2 cut(s)	261, 413
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	138, 231
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	418, 436
BsiSI	CCGG	1 cut(s)	520
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	418, 436
Bsp13I	TCCGGA	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	101, 297
BspANI	GGCC	2 cut(s)	418, 436
BspCNI	CTCAG	2 cut(s)	139, 232
BspEI	TCCGGA	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	103, 396
BspPI	GGATC	2 cut(s)	96, 109
BsrDI	GCAATG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	261, 413
BssMI	GATC	2 cut(s)	101, 297
BssNI	GRCGYC	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	106, 262
Bst4CI	ACNGT	2 cut(s)	157, 547
Bst6I	CTCTTC	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	147, 240
BstKTI	GATC	2 cut(s)	104, 300
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	101, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	448
BstNI	CCWGG	2 cut(s)	106, 262
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	104, 260
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	418, 436
BtgZI	GCGATG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	2 cut(s)	158, 337
Csp6I	GTAC	2 cut(s)	211, 543
CviAII	CATG	3 cut(s)	269, 443, 530
CviJI	RGCY	7 cut(s)	55, 151, 226, 365, 418, 436, 527
CviKI_1	RGCY	7 cut(s)	55, 151, 226, 365, 418, 436, 527
CviQI	GTAC	2 cut(s)	211, 543
DdeI	CTNAG	2 cut(s)	147, 240
DpnI	GATC	2 cut(s)	103, 299
DpnII	GATC	2 cut(s)	101, 297
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	104, 260
FaeI	CATG	3 cut(s)	272, 446, 533
FaiI	YATR	9 cut(s)	17, 23, 41, 270, 401, 444, 480, 504, 531
FalI	AAGNNNNNCTT	4 cut(s)	75, 107, 500, 532
FatI	CATG	3 cut(s)	268, 442, 529
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	2 cut(s)	35, 384
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	418, 436
HapII	CCGG	1 cut(s)	520
HgaI	GACGC	2 cut(s)	158, 337
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	3 cut(s)	272, 446, 533
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	2 cut(s)	30, 409
HpaII	CCGG	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	246, 550
Hpy188I	TCNGA	7 cut(s)	178, 221, 236, 414, 424, 499, 566
Hpy188III	TCNNGA	3 cut(s)	206, 520, 530
Hpy8I	GTNNAC	2 cut(s)	246, 550
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	212, 278, 517
HpyCH4III	ACNGT	2 cut(s)	157, 547
HpyCH4IV	ACGT	4 cut(s)	60, 231, 303, 426
HpyCH4V	TGCA	4 cut(s)	268, 314, 319, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	448
HpyF3I	CTNAG	2 cut(s)	147, 240
HpySE526I	ACGT	4 cut(s)	60, 231, 303, 426
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	3 cut(s)	272, 446, 533
Kpn2I	TCCGGA	1 cut(s)	519
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	101, 297
LpnPI	CCDG	7 cut(s)	91, 118, 159, 247, 252, 274, 533
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	301, 364
MaeI	CTAG	2 cut(s)	35, 384
MaeII	ACGT	4 cut(s)	60, 231, 303, 426
MaeIII	GTNAC	2 cut(s)	61, 170
MalI	GATC	2 cut(s)	103, 299
MboI	GATC	2 cut(s)	101, 297
MboII	GAAGA	4 cut(s)	16, 266, 508, 550
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	3 cut(s)	111, 121, 387
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	139, 259
MnlI	CCTC	5 cut(s)	209, 215, 285, 408, 447
MroI	TCCGGA	1 cut(s)	519
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	114, 120
MslI	CAYNNNNRTG	2 cut(s)	177, 404
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	2 cut(s)	106, 262
MvaI	CCWGG	2 cut(s)	106, 262
MwoI	GCNNNNNNNGC	1 cut(s)	448
NdeII	GATC	2 cut(s)	101, 297
NlaIII	CATG	3 cut(s)	272, 446, 533
NlaIV	GGNNCC	2 cut(s)	103, 396
NmuCI	GTSAC	2 cut(s)	61, 170
NspI	RCATGY	1 cut(s)	272
PagI	TCATGA	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	409
PflFI	GACNNNGTC	1 cut(s)	503
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
Psp1406I	AACGTT	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	104, 260
PspGI	CCWGG	2 cut(s)	104, 260
PspN4I	GGNNCC	2 cut(s)	103, 396
PspPI	GGNCC	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	101
PsyI	GACNNNGTC	1 cut(s)	503
RsaI	GTAC	2 cut(s)	212, 544
RsaNI	GTAC	2 cut(s)	211, 543
RseI	CAYNNNNRTG	2 cut(s)	177, 404
SaqAI	TTAA	2 cut(s)	114, 120
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	2 cut(s)	101, 297
Sau96I	GGNCC	1 cut(s)	434
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	106, 262
SetI	ASST	8 cut(s)	63, 120, 153, 234, 241, 263, 306, 429
SfaNI	GCATC	2 cut(s)	301, 364
SmiMI	CAYNNNNRTG	2 cut(s)	177, 404
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	111, 121, 387
SspMI	CTAG	2 cut(s)	35, 384
StyD4I	CCNGG	2 cut(s)	104, 260
TaaI	ACNGT	2 cut(s)	157, 547
TaiI	ACGT	4 cut(s)	63, 234, 306, 429
TaqI	TCGA	2 cut(s)	351, 358
TasI	AATT	3 cut(s)	111, 121, 387
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	2 cut(s)	114, 120
Tru9I	TTAA	2 cut(s)	114, 120
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	2 cut(s)	61, 170
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	2 cut(s)	61, 170
TspDTI	ATGAA	4 cut(s)	17, 62, 267, 459
TspRI	CASTG	1 cut(s)	321
Tth111I	GACNNNGTC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	2 cut(s)	35, 384
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.