AT1G55546

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002354
Physical Location & Seq
Forward (+)
20743828 .. 20745109
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55546.1

Sequence Viewer

Length: 396 bp
ATGACAAGATTTGCATTGGATGAGTACCTTCTTCATTGCTGTTTGATGAAGCTTGCCATTAATTATTATCAATACTTGTTGGTAGTTCTTGAGTTTGCGTCTCTCGTGGATTTTGGATTAGCTTCACCTTCCACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTATGCTAATGGTGAAACGGATGTAAATTATCAAGTCATGTCTGCAAAGGATCTAGTAGACTCTGTTTTCACTCTAGGAGGTTGGTCTAATTTTCTGTGCTCGGAGAAAAAACTTCAGCAACCTGTTGATGTTGCACTCGTGTTCATTGGCAGAGAGTTATTGTCTTCAGATGTTTCTTCAAATCAGAACTCGGATCCTGTCCTTGTTAACACATTGAAGTACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

4.57

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AciI CCGC 1 cut(s) 158
AclWI GGATC 3 cut(s) 225, 356, 369
AcuI CTGAAG 2 cut(s) 266, 318
AfaI GTAC 2 cut(s) 26, 389
AgsI TTSAA 2 cut(s) 348, 385
AluBI AGCT 2 cut(s) 52, 122
AluI AGCT 2 cut(s) 52, 122
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 2 cut(s) 105, 159
AlwI GGATC 3 cut(s) 225, 356, 369
AlwNI CAGNNNCTG 1 cut(s) 140
AseI ATTAAT 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 117, 191
BamHI GGATCC 1 cut(s) 361
BauI CACGAG 2 cut(s) 104, 305
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 105, 159
BfaI CTAG 2 cut(s) 221, 242
BmcAI AGTACT 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 363
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 34
BseGI GGATG 2 cut(s) 25, 193
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 105, 159
BsmBI CGTCTC 1 cut(s) 105
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 2 cut(s) 217, 361
BspACI CCGC 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 3 cut(s) 225, 356, 369
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 166
BssMI GATC 2 cut(s) 217, 361
BssSI CACGAG 2 cut(s) 104, 305
Bst2BI CACGAG 2 cut(s) 104, 305
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 54
BstF5I GGATG 2 cut(s) 25, 193
BstKTI GATC 2 cut(s) 220, 364
BstMAI GTCTC 2 cut(s) 105, 159
BstMBI GATC 2 cut(s) 217, 361
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 217, 361
BstYI RGATCY 2 cut(s) 217, 361
BtsCI GGATG 2 cut(s) 25, 193
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 140
CseI GACGC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 25, 388
CviAII CATG 1 cut(s) 205
CviJI RGCY 2 cut(s) 52, 122
CviKI_1 RGCY 2 cut(s) 52, 122
CviQI GTAC 2 cut(s) 25, 388
DpnI GATC 2 cut(s) 219, 363
DpnII GATC 2 cut(s) 217, 361
Eco31I GGTCTC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 266, 318
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 1 cut(s) 208
FaiI YATR 2 cut(s) 171, 206
FatI CATG 1 cut(s) 204
FblI GTMKAC 1 cut(s) 225
FokI GGATG 2 cut(s) 32, 200
FspBI CTAG 2 cut(s) 221, 242
GsuI CTGGAG 1 cut(s) 149
HgaI GACGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 208
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 227
HpaI GTTAAC 1 cut(s) 376
HphI GGTGA 2 cut(s) 117, 191
Hpy166II GTNNAC 2 cut(s) 226, 376
Hpy188I TCNGA 4 cut(s) 271, 337, 354, 361
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 2 cut(s) 226, 376
HpyAV CCTTC 2 cut(s) 38, 138
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 14, 212, 302
Hsp92II CATG 1 cut(s) 208
KspAI GTTAAC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 217, 361
LpnPI CCDG 5 cut(s) 136, 153, 179, 303, 378
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 221, 242
MalI GATC 2 cut(s) 219, 363
MboI GATC 2 cut(s) 217, 361
MboII GAAGA 3 cut(s) 23, 324, 336
MflI RGATCY 2 cut(s) 217, 361
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 3 cut(s) 61, 193, 256
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 2 cut(s) 158, 239
MseI TTAA 2 cut(s) 60, 375
NdeII GATC 2 cut(s) 217, 361
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 363
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PshBI ATTAAT 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 363
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 2 cut(s) 217, 361
RsaI GTAC 2 cut(s) 26, 389
RsaNI GTAC 2 cut(s) 25, 388
SaqAI TTAA 2 cut(s) 60, 375
Sau3AI GATC 2 cut(s) 217, 361
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 269
SetI ASST 6 cut(s) 30, 54, 124, 130, 250, 292
SfaNI GCATC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 61, 193, 256
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 221, 242
TaaI ACNGT 1 cut(s) 136
TasI AATT 3 cut(s) 61, 193, 256
TatI WGTACW 1 cut(s) 387
Tru1I TTAA 2 cut(s) 60, 375
Tru9I TTAA 2 cut(s) 60, 375
TspDTI ATGAA 3 cut(s) 23, 62, 301
TspGWI ACGGA 1 cut(s) 200
VspI ATTAAT 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 221, 242
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.