Rroxscaffold_1G00000540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002354
Physical Location & Seq
Reverse (-)
982582 .. 986746
4165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000540.1

Sequence Viewer

Length: 966 bp
ATGAAGGCTGCTCTACCTTTGCTAGCATATTTGGTGGCTTTGTTGCTTGCCTCTCAGATTCCTTCAGGGCTTCCAATGCCCTCCACTTACAACACAGTGCCAGCTTTCCTTTGGTCACCGCACTACCATCAAGTCAAGGCAGCCATTAATTACCAGACTATCTCTCCAAAGGATTTAGCAAAGTCTGTGCTTTCAGAAGGGGGCTGGTCGAACTTGCTGTGCCCTAGCAACGAAGTTCATCAGCCTTTGGACCTTGCTCTTGTCTTCGTTGGTACAGAGTTGCAATCTTCGGATATTTCTGCAAGCAAACATGCTGATCCAGCTCTTGTGGACTTACTCAAAGTCTCTTTCACACAATCAAATTTCTCCATGGCATTTCCCTATATTGCTGCATCAGAGAAGGATGCTATGGAAAGTTCTTTAGTGTCAGGGATGTCAGAGATCTGTGGGCAAAATTTTGGATTCAATAATGTTCGTTTCTCGGAGTCATGTTCTATGGACAGTGATAATGTTCAAAAGCTTTCAGACCTGCATTCGGTCCATGATTATCTTCTTTCAAGGATGGAGAAAAGATCAAGTGGGGAAGCAGATTTGGTGGTGTTCTGCCACAAAGGATCTGATTCTTTAAAGGAACTAGAACACCCACATTCAGAGAGTGAAATTTTCTCTGAGATTATTAGTTCTGTGGATCAGTCTGGGGCAAAATATGCCGTTCTGTATGTTTCAGACCCCATTAAATCAATCCAATATCCTTCTCATCGAGAGTTAGAAAGGTTTCTCGCTGAAAGTGCCTCAGGAAATGCATCAGCCAATTCGACAGCCTGTGATGAAGTTTGTCAGATCAAATCATCACTTCTGGAGGGACTTCTAGTTGCAATTGTTCTGCTTATAATCTTAATATCAGGCATCTGCTGTATGATGGGCATTGATACTCCCACGAGATTTGAGGCACCCCAAGAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

34.85

Weight (kDa)

4.88

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ac45-VOA1_TM PF20520 285 - 316 4.1e-09 V0 complex accessory subunit Ac45/VOA1 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 890
Acc36I ACCTGC 1 cut(s) 537
AccB1I GGYRCC 1 cut(s) 949
AciI CCGC 1 cut(s) 119
AclWI GGATC 3 cut(s) 311, 622, 696
AcsI RAATTY 3 cut(s) 361, 454, 660
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 535
AgsI TTSAA 3 cut(s) 466, 515, 558
AluBI AGCT 3 cut(s) 104, 323, 520
AluI AGCT 3 cut(s) 104, 323, 520
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 3 cut(s) 311, 622, 696
ApeKI GCWGC 3 cut(s) 8, 140, 389
ApoI RAATTY 3 cut(s) 361, 454, 660
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 774
AspS9I GGNCC 2 cut(s) 250, 538
AsuHPI GGTGA 1 cut(s) 108
AsuNHI GCTAGC 1 cut(s) 22
AvaII GGWCC 2 cut(s) 250, 538
AxyI CCTNAGG 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 224
BanI GGYRCC 1 cut(s) 949
BauI CACGAG 1 cut(s) 937
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 152, 376
BccI CCATC 3 cut(s) 135, 556, 913
BceAI ACGGC 1 cut(s) 695
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 4 cut(s) 23, 225, 635, 869
BfuAI ACCTGC 1 cut(s) 537
BglII AGATCT 1 cut(s) 441
BisI GCNGC 3 cut(s) 9, 141, 390
BlsI GCNGC 3 cut(s) 10, 142, 391
Bme18I GGWCC 2 cut(s) 250, 538
BmgT120I GGNCC 2 cut(s) 250, 538
BmiI GGNNCC 1 cut(s) 951
BmsI GCATC 4 cut(s) 394, 401, 812, 915
BmtI GCTAGC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 878
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse21I CCTNAGG 1 cut(s) 793
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 3 cut(s) 409, 438, 567
BseLI CCNNNNNNNGG 1 cut(s) 535
BseMII CTCAG 3 cut(s) 68, 660, 807
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 2 cut(s) 152, 376
BshNI GGYRCC 1 cut(s) 949
BslFI GGGAC 1 cut(s) 876
BslI CCNNNNNNNGG 1 cut(s) 535
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 876
BsmI GAATGC 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 6 cut(s) 316, 441, 572, 614, 688, 840
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 1 cut(s) 119
BspCNI CTCAG 3 cut(s) 67, 661, 806
BspLI GGNNCC 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 537
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 3 cut(s) 311, 622, 696
BspT107I GGYRCC 1 cut(s) 949
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 6 cut(s) 316, 441, 572, 614, 688, 840
BssSI CACGAG 1 cut(s) 937
BssT1I CCWWGG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 937
Bst4CI ACNGT 2 cut(s) 97, 503
BstAPI GCANNNNNTGC 1 cut(s) 707
BstC8I GCNNGC 4 cut(s) 24, 48, 102, 304
BstDEI CTNAG 3 cut(s) 54, 669, 793
BstDSI CCRYGG 1 cut(s) 369
BstEII GGTNACC 1 cut(s) 114
BstF5I GGATG 3 cut(s) 409, 438, 567
BstKTI GATC 6 cut(s) 319, 444, 575, 617, 691, 843
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 6 cut(s) 316, 441, 572, 614, 688, 840
BstMWI GCNNNNNNNGC 4 cut(s) 76, 320, 707, 788
BstNSI RCATGY 1 cut(s) 314
BstPI GGTNACC 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 152, 376
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 2 cut(s) 441, 614
BstYI RGATCY 2 cut(s) 441, 614
Bsu36I CCTNAGG 1 cut(s) 793
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 3 cut(s) 409, 438, 567
BtsIMutI CAGTG 2 cut(s) 102, 508
BveI ACCTGC 1 cut(s) 537
Cac8I GCNNGC 4 cut(s) 24, 48, 102, 304
Cfr13I GGNCC 2 cut(s) 250, 538
Csp6I GTAC 1 cut(s) 273
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
CviAII CATG 4 cut(s) 311, 370, 489, 542
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 3 cut(s) 54, 669, 793
DpnI GATC 6 cut(s) 318, 443, 574, 616, 690, 842
DpnII GATC 6 cut(s) 316, 441, 572, 614, 688, 840
DraI TTTAAA 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 250, 538
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 793
Eco91I GGTNACC 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 4 cut(s) 314, 373, 492, 545
FaqI GGGAC 1 cut(s) 876
FatI CATG 4 cut(s) 310, 369, 488, 541
Fnu4HI GCNGC 3 cut(s) 9, 141, 390
FokI GGATG 3 cut(s) 416, 445, 574
Fsp4HI GCNGC 3 cut(s) 9, 141, 390
FspBI CTAG 4 cut(s) 23, 225, 635, 869
GluI GCNGC 3 cut(s) 9, 141, 390
GsuI CTGGAG 1 cut(s) 878
Hin1II CATG 4 cut(s) 314, 373, 492, 545
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 5 cut(s) 58, 462, 485, 620, 959
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 331
Hpy188III TCNNGA 3 cut(s) 761, 795, 857
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 4 cut(s) 72, 191, 394, 762
HpyCH4III ACNGT 2 cut(s) 97, 503
HpyCH4V TGCA 6 cut(s) 283, 302, 392, 532, 803, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 320, 707, 788
HpyF3I CTNAG 3 cut(s) 54, 669, 793
Hsp92II CATG 4 cut(s) 314, 373, 492, 545
Kzo9I GATC 6 cut(s) 316, 441, 572, 614, 688, 840
Lsp1109I GCAGC 2 cut(s) 152, 376
LweI GCATC 4 cut(s) 394, 401, 812, 915
MaeI CTAG 4 cut(s) 23, 225, 635, 869
MaeIII GTNAC 1 cut(s) 114
MalI GATC 6 cut(s) 318, 443, 574, 616, 690, 842
MboI GATC 6 cut(s) 316, 441, 572, 614, 688, 840
MboII GAAGA 3 cut(s) 256, 279, 542
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 2 cut(s) 441, 614
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 6 cut(s) 148, 361, 454, 660, 811, 876
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 5 cut(s) 61, 91, 802, 853, 940
Mph1103I ATGCAT 1 cut(s) 805
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 5 cut(s) 147, 626, 735, 896, 964
MunI CAATTG 1 cut(s) 876
Mva1269I GAATGC 1 cut(s) 532
MwoI GCNNNNNNNGC 4 cut(s) 76, 320, 707, 788
NcoI CCATGG 1 cut(s) 369
NdeII GATC 6 cut(s) 316, 441, 572, 614, 688, 840
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 4 cut(s) 314, 373, 492, 545
NlaIV GGNNCC 1 cut(s) 951
NmuCI GTSAC 1 cut(s) 114
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 1 cut(s) 314
PctI GAATGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 3 cut(s) 58, 462, 620
PkrI GCNGC 3 cut(s) 10, 142, 391
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 147
PsiI TTATAA 1 cut(s) 890
PspEI GGTNACC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 951
PspPI GGNCC 2 cut(s) 250, 538
PsuI RGATCY 2 cut(s) 441, 614
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 5 cut(s) 147, 626, 735, 896, 964
SatI GCNGC 3 cut(s) 9, 141, 390
Sau3AI GATC 6 cut(s) 316, 441, 572, 614, 688, 840
Sau96I GGNCC 2 cut(s) 250, 538
SchI GAGTC 1 cut(s) 494
SduI GDGCHC 1 cut(s) 224
SetI ASST 7 cut(s) 19, 106, 255, 325, 522, 531, 776
SfaNI GCATC 4 cut(s) 394, 401, 812, 915
SinI GGWCC 2 cut(s) 250, 538
Sse9I AATT 6 cut(s) 148, 361, 454, 660, 811, 876
SsiI CCGC 1 cut(s) 119
SspMI CTAG 4 cut(s) 23, 225, 635, 869
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 97, 503
TaqI TCGA 3 cut(s) 209, 760, 815
TaqII GACCGA 1 cut(s) 526
TasI AATT 6 cut(s) 148, 361, 454, 660, 811, 876
TfiI GAWTC 3 cut(s) 58, 462, 620
Tru1I TTAA 5 cut(s) 147, 626, 735, 896, 964
Tru9I TTAA 5 cut(s) 147, 626, 735, 896, 964
TscAI CASTG 2 cut(s) 102, 508
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 3 cut(s) 8, 140, 389
Tsp45I GTSAC 1 cut(s) 114
TspDTI ATGAA 3 cut(s) 17, 227, 843
TspRI CASTG 2 cut(s) 102, 508
VpaK11BI GGWCC 2 cut(s) 250, 538
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 3 cut(s) 361, 454, 660
XceI RCATGY 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 4 cut(s) 23, 225, 635, 869
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.