No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55546 AT3G13410 |
| fragaria_vesca | FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 |
| malus_domestica | MD03G1001400.v1.1 MD11G1000600.v1.1 |
| prunus_persica | Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1 |
| pyrus_communis | pycom03g00120 pycom11g00090 |
| rosa_chinensis | RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441 |
| rosa_laevigata | RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082 |
| rosa_multiflora | Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093 |
| rosa_roxburghii | Rroxscaffold_1G00000540 Rroxscaffold_7G00215590 |
| rosa_rugosa | Rorug05G0489000 Rorug05G0489100 |
| rosa_samantha | Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500 |
| rosa_wichuraiana | Rw5G050390 Rw7G010810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 301, 375 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 133, 339 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 70 |
| AgsI | TTSAA | 1 cut(s) | 194 |
| AluBI | AGCT | 2 cut(s) | 21, 199 |
| AluI | AGCT | 2 cut(s) | 21, 199 |
| Alw21I | GWGCWC | 1 cut(s) | 23 |
| Alw26I | GTCTC | 2 cut(s) | 244, 406 |
| AlwI | GGATC | 2 cut(s) | 301, 375 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApoI | RAATTY | 2 cut(s) | 133, 339 |
| AspS9I | GGNCC | 2 cut(s) | 30, 61 |
| AsuHPI | GGTGA | 1 cut(s) | 194 |
| AvaII | GGWCC | 2 cut(s) | 30, 61 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 23 |
| Bbv12I | GWGCWC | 1 cut(s) | 23 |
| BccI | CCATC | 2 cut(s) | 235, 346 |
| BcoDI | GTCTC | 2 cut(s) | 244, 406 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BglII | AGATCT | 1 cut(s) | 205 |
| Bme18I | GGWCC | 2 cut(s) | 30, 61 |
| BmgT120I | GGNCC | 2 cut(s) | 30, 61 |
| BmsI | GCATC | 1 cut(s) | 73 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 155, 187 |
| BpuEI | CTTGAG | 1 cut(s) | 62 |
| BsaJI | CCNNGG | 1 cut(s) | 6 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 70 |
| BseDI | CCNNGG | 1 cut(s) | 6 |
| BseGI | GGATG | 3 cut(s) | 52, 117, 246 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 70 |
| BseMII | CTCAG | 3 cut(s) | 36, 339, 417 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKAI | GWGCWC | 1 cut(s) | 23 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 70 |
| BsmAI | GTCTC | 2 cut(s) | 244, 406 |
| BsmBI | CGTCTC | 1 cut(s) | 244 |
| BsmI | GAATGC | 1 cut(s) | 211 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp1286I | GDGCHC | 1 cut(s) | 23 |
| Bsp143I | GATC | 3 cut(s) | 205, 293, 367 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 3 cut(s) | 35, 340, 416 |
| BspPI | GGATC | 2 cut(s) | 301, 375 |
| BssECI | CCNNGG | 1 cut(s) | 6 |
| BssMI | GATC | 3 cut(s) | 205, 293, 367 |
| Bst4CI | ACNGT | 1 cut(s) | 10 |
| Bst6I | CTCTTC | 1 cut(s) | 242 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 386 |
| BstDEI | CTNAG | 3 cut(s) | 22, 348, 403 |
| BstDSI | CCRYGG | 1 cut(s) | 6 |
| BstF5I | GGATG | 3 cut(s) | 52, 117, 246 |
| BstKTI | GATC | 3 cut(s) | 208, 296, 370 |
| BstMAI | GTCTC | 2 cut(s) | 244, 406 |
| BstMBI | GATC | 3 cut(s) | 205, 293, 367 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 386 |
| BstX2I | RGATCY | 2 cut(s) | 205, 293 |
| BstYI | RGATCY | 2 cut(s) | 205, 293 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgI | CCRYGG | 1 cut(s) | 6 |
| BtsCI | GGATG | 3 cut(s) | 52, 117, 246 |
| BtsIMutI | CAGTG | 1 cut(s) | 30 |
| Cfr13I | GGNCC | 2 cut(s) | 30, 61 |
| CviAII | CATG | 3 cut(s) | 34, 168, 221 |
| CviJI | RGCY | 3 cut(s) | 5, 21, 199 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 21, 199 |
| DdeI | CTNAG | 3 cut(s) | 22, 348, 403 |
| DpnI | GATC | 3 cut(s) | 207, 295, 369 |
| DpnII | GATC | 3 cut(s) | 205, 293, 367 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 242 |
| EarI | CTCTTC | 1 cut(s) | 242 |
| Ecl136II | GAGCTC | 1 cut(s) | 21 |
| Eco24I | GRGCYC | 1 cut(s) | 23 |
| Eco47I | GGWCC | 2 cut(s) | 30, 61 |
| Eco53kI | GAGCTC | 1 cut(s) | 21 |
| EcoICRI | GAGCTC | 1 cut(s) | 21 |
| EcoT38I | GRGCYC | 1 cut(s) | 23 |
| Esp3I | CGTCTC | 1 cut(s) | 244 |
| FaeI | CATG | 3 cut(s) | 37, 171, 224 |
| FaiI | YATR | 8 cut(s) | 35, 89, 169, 176, 222, 387, 397, 399 |
| FatI | CATG | 3 cut(s) | 33, 167, 220 |
| FokI | GGATG | 3 cut(s) | 59, 124, 253 |
| FriOI | GRGCYC | 1 cut(s) | 23 |
| FspBI | CTAG | 1 cut(s) | 314 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| Hin1II | CATG | 3 cut(s) | 37, 171, 224 |
| HindIII | AAGCTT | 1 cut(s) | 197 |
| HinfI | GANTC | 2 cut(s) | 164, 299 |
| HphI | GGTGA | 1 cut(s) | 194 |
| Hpy188I | TCNGA | 6 cut(s) | 118, 163, 298, 331, 349, 406 |
| Hpy188III | TCNNGA | 1 cut(s) | 41 |
| HpyAV | CCTTC | 1 cut(s) | 441 |
| HpyCH4III | ACNGT | 1 cut(s) | 10 |
| HpyCH4V | TGCA | 2 cut(s) | 211, 389 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 386 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 348, 403 |
| Hsp92II | CATG | 3 cut(s) | 37, 171, 224 |
| Kzo9I | GATC | 3 cut(s) | 205, 293, 367 |
| LmnI | GCTCC | 1 cut(s) | 73 |
| LpnPI | CCDG | 3 cut(s) | 77, 93, 360 |
| LweI | GCATC | 1 cut(s) | 73 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MalI | GATC | 3 cut(s) | 207, 295, 369 |
| MboI | GATC | 3 cut(s) | 205, 293, 367 |
| MboII | GAAGA | 1 cut(s) | 259 |
| MflI | RGATCY | 2 cut(s) | 205, 293 |
| MhlI | GDGCHC | 1 cut(s) | 23 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 133, 339 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 173 |
| MnlI | CCTC | 3 cut(s) | 21, 37, 231 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 143, 414 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| Mva1269I | GAATGC | 1 cut(s) | 211 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 386 |
| NdeII | GATC | 3 cut(s) | 205, 293, 367 |
| NlaIII | CATG | 3 cut(s) | 37, 171, 224 |
| PctI | GAATGC | 1 cut(s) | 211 |
| PfeI | GAWTC | 1 cut(s) | 299 |
| PleI | GAGTC | 1 cut(s) | 172 |
| PpsI | GAGTC | 1 cut(s) | 172 |
| Psp124BI | GAGCTC | 1 cut(s) | 23 |
| PspPI | GGNCC | 2 cut(s) | 30, 61 |
| PsuI | RGATCY | 2 cut(s) | 205, 293 |
| SacI | GAGCTC | 1 cut(s) | 23 |
| SaqAI | TTAA | 2 cut(s) | 143, 414 |
| Sau3AI | GATC | 3 cut(s) | 205, 293, 367 |
| Sau96I | GGNCC | 2 cut(s) | 30, 61 |
| SchI | GAGTC | 1 cut(s) | 173 |
| SduI | GDGCHC | 1 cut(s) | 23 |
| SetI | ASST | 3 cut(s) | 23, 32, 201 |
| SfaNI | GCATC | 1 cut(s) | 73 |
| SinI | GGWCC | 2 cut(s) | 30, 61 |
| SmlI | CTYRAG | 1 cut(s) | 41 |
| SmoI | CTYRAG | 1 cut(s) | 41 |
| Sse9I | AATT | 2 cut(s) | 133, 339 |
| SspI | AATATT | 1 cut(s) | 151 |
| SspMI | CTAG | 1 cut(s) | 314 |
| SstI | GAGCTC | 1 cut(s) | 23 |
| TaaI | ACNGT | 1 cut(s) | 10 |
| TasI | AATT | 2 cut(s) | 133, 339 |
| TfiI | GAWTC | 1 cut(s) | 299 |
| Tru1I | TTAA | 2 cut(s) | 143, 414 |
| Tru9I | TTAA | 2 cut(s) | 143, 414 |
| TscAI | CASTG | 1 cut(s) | 30 |
| TspGWI | ACGGA | 2 cut(s) | 74, 205 |
| TspRI | CASTG | 1 cut(s) | 30 |
| VpaK11BI | GGWCC | 2 cut(s) | 30, 61 |
| XapI | RAATTY | 2 cut(s) | 133, 339 |
| XspI | CTAG | 1 cut(s) | 314 |