Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002354

Physical Location & Seq

Genomic Coordinates Reverse (-)

58759904 .. 58760659

Gene Structure 756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGGCTGCTTTACCTTTGCTGCACATTTGGCGGCTTTGCTGGTTGCCTCTCAGATTTCTTCAGGGCTGTCATTGCCCTCCACTTATAACACTGTGCCAGCTGTCCTCTGAAGGGGGCTGGTCGAACTTGCTGTACCCTAGCAATGAAGTTCATCAGCCTTTGGACCTTGCTTTTGTCTTCGTTGGTACAGAGTTGCAATCTTCAGATATTTCTGCAAGCAAACATGCTGATCCAGCTCTTGTGGACTTGCTTAATGTCTCTTTCACACGATCAAATTTCTCCATGGCATTCCCCTGTATTTCTGCATCGGAGAATGATGCTGTGGAAAATTCTCTAGTGTCAGGGATGGCAGAGATTTGTGGGCAGAATTTTGGATTCAGTAATGTTTGTTTCTCGGAGTCATGCTCTATGTGGGGTGACGATGTTCAAAAGCTTTCAGACCTGCATTCGGTCCATGATTATCTTCTTCCAAGGATGGAGAAGAGACCAAATGGGGAAGCAGATTTGGTGGTATTCTGCCACAAAGGATCTGATTCTAAAAAGGAACTAGAACATCCACATTCAAAGAGTAAAATTTTCTCTGAGATGGTTAGTTTTGTGGATCAGTCTGGGCCAAAATATGCAGTTCTATCGATCAATCCAATATCCTTCTCATTGAGTGTTTCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.77

Weight (kDa)

5.52

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55546 AT3G13410
fragaria_vesca	FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990
malus_domestica	MD03G1001400.v1.1 MD11G1000600.v1.1
prunus_persica	Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1
pyrus_communis	pycom03g00120 pycom11g00090
rosa_chinensis	RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441
rosa_laevigata	RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082
rosa_multiflora	Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093
rosa_roxburghii	Rroxscaffold_1G00000540 Rroxscaffold_7G00215590
rosa_rugosa	Rorug05G0489000 Rorug05G0489100
rosa_samantha	Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500
rosa_wichuraiana	Rw5G050390 Rw7G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	453
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	3 cut(s)	227, 538, 612
AcsI	RAATTY	4 cut(s)	277, 331, 370, 576
AcuI	CTGAAG	3 cut(s)	47, 132, 189
AfaI	GTAC	2 cut(s)	137, 190
AfiI	CCNNNNNNNGG	2 cut(s)	114, 451
AgsI	TTSAA	2 cut(s)	431, 567
AluBI	AGCT	3 cut(s)	103, 239, 436
AluI	AGCT	3 cut(s)	103, 239, 436
Alw26I	GTCTC	2 cut(s)	265, 481
AlwI	GGATC	3 cut(s)	227, 538, 612
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	2 cut(s)	8, 22
ApoI	RAATTY	4 cut(s)	277, 331, 370, 576
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspS9I	GGNCC	3 cut(s)	166, 454, 614
AsuHPI	GGTGA	1 cut(s)	431
AvaII	GGWCC	2 cut(s)	166, 454
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	3 cut(s)	343, 472, 583
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BcoDI	GTCTC	2 cut(s)	265, 481
BfaI	CTAG	3 cut(s)	141, 338, 551
BfuAI	ACCTGC	1 cut(s)	453
BisI	GCNGC	3 cut(s)	9, 23, 35
BlsI	GCNGC	3 cut(s)	10, 24, 36
Bme18I	GGWCC	2 cut(s)	166, 454
BmgT120I	GGNCC	3 cut(s)	166, 454, 614
BmsI	GCATC	2 cut(s)	310, 317
BpiI	GAAGAC	1 cut(s)	172
BplI	GAGNNNNNCTC	3 cut(s)	392, 424, 652
Bsa29I	ATCGAT	1 cut(s)	635
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	285, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 451
Bse3DI	GCAATG	2 cut(s)	73, 151
BseCI	ATCGAT	1 cut(s)	635
BseDI	CCNNGG	2 cut(s)	285, 473
BseGI	GGATG	3 cut(s)	354, 483, 556
BseLI	CCNNNNNNNGG	2 cut(s)	114, 451
BseMI	GCAATG	2 cut(s)	73, 151
BseMII	CTCAG	2 cut(s)	67, 576
BseXI	GCAGC	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	616
BshVI	ATCGAT	1 cut(s)	635
BslI	CCNNNNNNNGG	2 cut(s)	114, 451
BsmAI	GTCTC	2 cut(s)	265, 481
BsmI	GAATGC	2 cut(s)	290, 448
BsnI	GGCC	1 cut(s)	616
Bso31I	GGTCTC	1 cut(s)	481
Bsp143I	GATC	5 cut(s)	232, 272, 530, 604, 636
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	2 cut(s)	66, 577
BspDI	ATCGAT	1 cut(s)	635
BspMI	ACCTGC	1 cut(s)	453
BspPI	GGATC	3 cut(s)	227, 538, 612
BspTNI	GGTCTC	1 cut(s)	481
BsrDI	GCAATG	2 cut(s)	73, 151
BssECI	CCNNGG	2 cut(s)	285, 473
BssMI	GATC	5 cut(s)	232, 272, 530, 604, 636
BssT1I	CCWWGG	2 cut(s)	285, 473
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	101, 220
BstDEI	CTNAG	2 cut(s)	53, 585
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	354, 483, 556
BstKTI	GATC	5 cut(s)	235, 275, 533, 607, 639
BstMAI	GTCTC	2 cut(s)	265, 481
BstMBI	GATC	5 cut(s)	232, 272, 530, 604, 636
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 75, 236
BstNSI	RCATGY	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
Bsu15I	ATCGAT	1 cut(s)	635
BsuRI	GGCC	1 cut(s)	616
BsuTUI	ATCGAT	1 cut(s)	635
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	354, 483, 556
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	101, 220
Cfr13I	GGNCC	3 cut(s)	166, 454, 614
ClaI	ATCGAT	1 cut(s)	635
Csp6I	GTAC	2 cut(s)	136, 189
CviAII	CATG	4 cut(s)	227, 286, 405, 458
CviJI	RGCY	9 cut(s)	8, 37, 69, 103, 120, 160, 239, 436, 616
CviKI_1	RGCY	9 cut(s)	8, 37, 69, 103, 120, 160, 239, 436, 616
CviQI	GTAC	2 cut(s)	136, 189
DdeI	CTNAG	2 cut(s)	53, 585
DpnI	GATC	5 cut(s)	234, 274, 532, 606, 638
DpnII	GATC	5 cut(s)	232, 272, 530, 604, 636
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	285, 473
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	166, 454
Eco57I	CTGAAG	3 cut(s)	47, 132, 189
EcoT14I	CCWWGG	2 cut(s)	285, 473
ErhI	CCWWGG	2 cut(s)	285, 473
FaeI	CATG	4 cut(s)	230, 289, 408, 461
FaiI	YATR	7 cut(s)	89, 228, 287, 406, 413, 459, 624
FatI	CATG	4 cut(s)	226, 285, 404, 457
Fnu4HI	GCNGC	3 cut(s)	9, 23, 35
FokI	GGATG	3 cut(s)	361, 490, 543
Fsp4HI	GCNGC	3 cut(s)	9, 23, 35
FspBI	CTAG	3 cut(s)	141, 338, 551
GluI	GCNGC	3 cut(s)	9, 23, 35
HaeIII	GGCC	1 cut(s)	616
Hin1II	CATG	4 cut(s)	230, 289, 408, 461
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	378, 401, 536
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	8 cut(s)	56, 112, 208, 313, 400, 442, 535, 586
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	2 cut(s)	107, 661
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	6 cut(s)	25, 199, 218, 308, 448, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 75, 236
HpyF3I	CTNAG	2 cut(s)	53, 585
Hsp92II	CATG	4 cut(s)	230, 289, 408, 461
Kzo9I	GATC	5 cut(s)	232, 272, 530, 604, 636
LpnPI	CCDG	9 cut(s)	28, 50, 106, 113, 249, 310, 330, 458, 597
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	2 cut(s)	310, 317
MaeI	CTAG	3 cut(s)	141, 338, 551
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	5 cut(s)	234, 274, 532, 606, 638
MboI	GATC	5 cut(s)	232, 272, 530, 604, 636
MboII	GAAGA	6 cut(s)	53, 172, 195, 458, 461, 496
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	4 cut(s)	277, 331, 370, 576
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	3 cut(s)	60, 90, 118
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	103
Mva1269I	GAATGC	2 cut(s)	290, 448
MwoI	GCNNNNNNNGC	3 cut(s)	31, 75, 236
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	5 cut(s)	232, 272, 530, 604, 636
NlaIII	CATG	4 cut(s)	230, 289, 408, 461
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	230
PctI	GAATGC	2 cut(s)	290, 448
PfeI	GAWTC	2 cut(s)	378, 536
PkrI	GCNGC	3 cut(s)	10, 24, 36
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	89
PspPI	GGNCC	3 cut(s)	166, 454, 614
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
PsuI	RGATCY	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	137, 190
RsaNI	GTAC	2 cut(s)	136, 189
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	3 cut(s)	9, 23, 35
Sau3AI	GATC	5 cut(s)	232, 272, 530, 604, 636
Sau96I	GGNCC	3 cut(s)	166, 454, 614
SchI	GAGTC	1 cut(s)	410
SetI	ASST	6 cut(s)	19, 105, 171, 241, 438, 447
SfaNI	GCATC	2 cut(s)	310, 317
SinI	GGWCC	2 cut(s)	166, 454
Sse9I	AATT	4 cut(s)	277, 331, 370, 576
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	3 cut(s)	141, 338, 551
StyI	CCWWGG	2 cut(s)	285, 473
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	125, 635
TaqII	GACCGA	1 cut(s)	442
TasI	AATT	4 cut(s)	277, 331, 370, 576
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	378, 536
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	2 cut(s)	8, 22
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	17, 143, 162
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	166, 454
XapI	RAATTY	4 cut(s)	277, 331, 370, 576
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	3 cut(s)	141, 338, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.