Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002354

Physical Location & Seq

Genomic Coordinates Reverse (-)

36268438 .. 36289746

Gene Structure 21309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG290500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATTTCGAGAGTGGAGTATTTGTGTACAAACTTGTTTGGTTTTGCGGTACAAGTAAGTTACATCATTCCAAATTTCCAGTTTGTTTCAAAACATTCGGCTATTGGTTGCAGGGTTGGTACAGGGTTGCAATCTTCGGATATTTCTGCAAGAAAACATGCTGATCCAGCTCTTGTGGACTTGCTCAAAGTCTCTTTCACACAATCAAATTTCTCCATGGCATTCCCCTATATTTCTACATCGGAGAATGATGCTGTGGAAAGTTTTTTAGTGTCAGGGATGTCAGAGATTTGTGGGCAGAATTTTGGATTCAGTAATGTTTGTTTCTTGGAGTCATGCTCTATGTGGGGTGATGATGTTCAAAAGCTTTCAGACCTGCATTCGGTCCATGATTATTTTCTTTTGAGGATGGAGAAGAGACCAAATGGGGAAGCAGATTTGGTGGTGTTCTGCCACAAAGGATCTGATTCTAAAAAGGAATTAGAACACCCACATTCAGAGAGTAAAATTTTCTCTGAGATGGTTAGTTTTGTGGATCAGTCTGGGGCAAAATATGCAGTTCTATATGTCTCAGACCCCATTAAATCAATCCAATATCCTTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.52

Weight (kDa)

5.55

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55546 AT3G13410
fragaria_vesca	FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990
malus_domestica	MD03G1001400.v1.1 MD11G1000600.v1.1
prunus_persica	Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1
pyrus_communis	pycom03g00120 pycom11g00090
rosa_chinensis	RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441
rosa_laevigata	RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082
rosa_multiflora	Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093
rosa_roxburghii	Rroxscaffold_1G00000540 Rroxscaffold_7G00215590
rosa_rugosa	Rorug05G0489000 Rorug05G0489100
rosa_samantha	Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500
rosa_wichuraiana	Rw5G050390 Rw7G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	3 cut(s)	158, 469, 543
AcsI	RAATTY	4 cut(s)	73, 208, 301, 507
AfaI	GTAC	3 cut(s)	28, 51, 121
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	90, 362
AluBI	AGCT	2 cut(s)	170, 367
AluI	AGCT	2 cut(s)	170, 367
Alw26I	GTCTC	3 cut(s)	196, 412, 574
AlwI	GGATC	3 cut(s)	158, 469, 543
ApoI	RAATTY	4 cut(s)	73, 208, 301, 507
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	385
BccI	CCATC	2 cut(s)	403, 514
BcoDI	GTCTC	3 cut(s)	196, 412, 574
BfuAI	ACCTGC	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmsI	GCATC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	285, 414
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	507, 585
BseNI	ACTGG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	3 cut(s)	196, 412, 574
BsmI	GAATGC	2 cut(s)	221, 379
Bso31I	GGTCTC	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	163, 461, 535
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	508, 584
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	158, 469, 543
BspTNI	GGTCTC	1 cut(s)	412
BsrGI	TGTACA	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	163, 461, 535
BssT1I	CCWWGG	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	516, 571
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	285, 414
BstKTI	GATC	3 cut(s)	166, 464, 538
BstMAI	GTCTC	3 cut(s)	196, 412, 574
BstMBI	GATC	3 cut(s)	163, 461, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 554
BstNSI	RCATGY	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	285, 414
BveI	ACCTGC	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	385
Csp6I	GTAC	3 cut(s)	27, 50, 120
CviAII	CATG	4 cut(s)	158, 217, 336, 389
CviJI	RGCY	3 cut(s)	101, 170, 367
CviKI_1	RGCY	3 cut(s)	101, 170, 367
CviQI	GTAC	3 cut(s)	27, 50, 120
DdeI	CTNAG	2 cut(s)	516, 571
DpnI	GATC	3 cut(s)	165, 463, 537
DpnII	GATC	3 cut(s)	163, 461, 535
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	4 cut(s)	161, 220, 339, 392
FaiI	YATR	9 cut(s)	159, 218, 231, 337, 344, 390, 555, 565, 567
FatI	CATG	4 cut(s)	157, 216, 335, 388
FokI	GGATG	2 cut(s)	292, 421
Hin1II	CATG	4 cut(s)	161, 220, 339, 392
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	3 cut(s)	309, 332, 467
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	27, 178
Hpy188I	TCNGA	8 cut(s)	139, 244, 286, 373, 466, 499, 517, 574
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	2 cut(s)	27, 178
HpyAV	CCTTC	1 cut(s)	609
HpyCH4V	TGCA	5 cut(s)	111, 130, 149, 379, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 554
HpyF3I	CTNAG	2 cut(s)	516, 571
Hsp92II	CATG	4 cut(s)	161, 220, 339, 392
Kzo9I	GATC	3 cut(s)	163, 461, 535
LpnPI	CCDG	7 cut(s)	92, 97, 108, 180, 261, 389, 528
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	3 cut(s)	165, 463, 537
MboI	GATC	3 cut(s)	163, 461, 535
MboII	GAAGA	2 cut(s)	126, 427
MflI	RGATCY	1 cut(s)	461
MluCI	AATT	5 cut(s)	73, 208, 301, 479, 507
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	582
Mva1269I	GAATGC	2 cut(s)	221, 379
MwoI	GCNNNNNNNGC	2 cut(s)	167, 554
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	163, 461, 535
NlaIII	CATG	4 cut(s)	161, 220, 339, 392
NspI	RCATGY	1 cut(s)	161
PctI	GAATGC	2 cut(s)	221, 379
PfeI	GAWTC	2 cut(s)	309, 467
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	3 cut(s)	28, 51, 121
RsaNI	GTAC	3 cut(s)	27, 50, 120
SaqAI	TTAA	1 cut(s)	582
Sau3AI	GATC	3 cut(s)	163, 461, 535
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	341
SetI	ASST	3 cut(s)	172, 369, 378
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	385
Sse9I	AATT	5 cut(s)	73, 208, 301, 479, 507
SsiI	CCGC	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	216
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	373
TasI	AATT	5 cut(s)	73, 208, 301, 479, 507
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	309, 467
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	4 cut(s)	73, 208, 301, 507
XceI	RCATGY	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.