Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002354

Physical Location & Seq

Genomic Coordinates Forward (+)

10069539 .. 10070495

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAGGCTGCTTTACCTTTGCTAAGCATATTTGGCGGCTTTGCTGGTTGCCTCTCAGATTTCTTCAGGGCTCCAAGTGTGCAATCAGAAGGGGGCTGGTCGAACTTGCTGTACCCTAGCAATGAAGTTCATCAGCCTTTGGACCTTGCTCTTGTCTTCGTTGGTACAGAGTTGCAATCTTCAGATATTTCTGCAAGCAAACTCTCCAAACATGCTTATCCAGCTCTTGTGGACTTGCTTAAAGTCTCTTTCACACAATCAAATTTCTCCATGGCATTCCCCTGTATTTCTGCATCAGAGAAGGATGCTATGGAAAGTTCTGTAGTGTCAGGGATGTCAGAGATTTGTGGGCAGAATTTTGGATTCAGTAATGTTTGTTTCTTGGAGTCATGCTCAATGTGGGGTGATGATGTTCAAAAGCTTTCAGACCTGCATTCGGTCCATGATTATATTCTTTCGAGGATGGAGAAGAGACCAAATGGGGAAGCAGATTTGGTGGTGTTCTGCCACAAAGGATCTGATTCTAAAAAGGAACTAGAACCCCCACATTCAGAGAGTAAAAAATTCTCTGAGATGTTCTATATGTTTCAGACCCCATTAAATCAATCCAATATCCTTCTCATTGAGAGTTTCTCGCTGAAAGTGCCTCAGGATTCAGGAAATGCATCAGCCAATTCGACAACCTGTGATGAAGTTTGTCAGTTCAAATCATCAATTCTGGAGGGACTTCTAGTTGCACCCCAAGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.31

Weight (kDa)

4.79

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55546 AT3G13410
fragaria_vesca	FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990
malus_domestica	MD03G1001400.v1.1 MD11G1000600.v1.1
prunus_persica	Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1
pyrus_communis	pycom03g00120 pycom11g00090
rosa_chinensis	RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441
rosa_laevigata	RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082
rosa_multiflora	Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093
rosa_roxburghii	Rroxscaffold_1G00000540 Rroxscaffold_7G00215590
rosa_rugosa	Rorug05G0489000 Rorug05G0489100
rosa_samantha	Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500
rosa_wichuraiana	Rw5G050390 Rw7G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	438
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	523
AcsI	RAATTY	3 cut(s)	262, 355, 563
AcuI	CTGAAG	2 cut(s)	49, 165
AfaI	GTAC	2 cut(s)	113, 166
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	416, 706
AluBI	AGCT	2 cut(s)	224, 421
AluI	AGCT	2 cut(s)	224, 421
Alw26I	GTCTC	2 cut(s)	250, 466
AlwI	GGATC	1 cut(s)	523
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	3 cut(s)	262, 355, 563
AspS9I	GGNCC	2 cut(s)	142, 439
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	142, 439
AxyI	CCTNAGG	1 cut(s)	648
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	148
BccI	CCATC	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	250, 466
BfaI	CTAG	3 cut(s)	117, 536, 731
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	438
BisI	GCNGC	2 cut(s)	9, 37
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	2 cut(s)	10, 38
Bme18I	GGWCC	2 cut(s)	142, 439
BmgT120I	GGNCC	2 cut(s)	142, 439
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	3 cut(s)	295, 302, 674
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	4 cut(s)	377, 409, 617, 649
BpmI	CTGGAG	1 cut(s)	740
Bpu1102I	GCTNAGC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse21I	CCTNAGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	3 cut(s)	310, 339, 468
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	3 cut(s)	69, 561, 662
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	2 cut(s)	250, 466
BsmFI	GGGAC	1 cut(s)	738
BsmI	GAATGC	2 cut(s)	275, 433
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	515
Bsp1720I	GCTNAGC	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	1 cut(s)	36
BspCNI	CTCAG	3 cut(s)	68, 562, 661
BspLI	GGNNCC	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	4 cut(s)	23, 55, 570, 648
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	310, 339, 468
BstKTI	GATC	1 cut(s)	518
BstMAI	GTCTC	2 cut(s)	250, 466
BstMBI	GATC	1 cut(s)	515
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 221, 643
BstNSI	RCATGY	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
Bsu36I	CCTNAGG	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	3 cut(s)	310, 339, 468
BveI	ACCTGC	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	142, 439
Csp6I	GTAC	2 cut(s)	112, 165
CviAII	CATG	4 cut(s)	212, 271, 390, 443
CviJI	RGCY	8 cut(s)	8, 39, 71, 96, 136, 224, 421, 671
CviKI_1	RGCY	8 cut(s)	8, 39, 71, 96, 136, 224, 421, 671
CviQI	GTAC	2 cut(s)	112, 165
DdeI	CTNAG	4 cut(s)	23, 55, 570, 648
DpnI	GATC	1 cut(s)	517
DpnII	GATC	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	142, 439
Eco57I	CTGAAG	2 cut(s)	49, 165
Eco81I	CCTNAGG	1 cut(s)	648
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	4 cut(s)	215, 274, 393, 446
FaiI	YATR	9 cut(s)	29, 213, 272, 311, 391, 444, 450, 582, 584
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	4 cut(s)	211, 270, 389, 442
Fnu4HI	GCNGC	2 cut(s)	9, 37
FokI	GGATG	3 cut(s)	317, 346, 475
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	9, 37
FspBI	CTAG	3 cut(s)	117, 536, 731
GluI	GCNGC	2 cut(s)	9, 37
GsuI	CTGGAG	1 cut(s)	740
Hin1II	CATG	4 cut(s)	215, 274, 393, 446
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	5 cut(s)	363, 386, 521, 653, 746
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	650, 657, 719
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	3 cut(s)	83, 295, 626
HpyCH4V	TGCA	7 cut(s)	82, 175, 194, 293, 433, 665, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 221, 643
HpyF3I	CTNAG	4 cut(s)	23, 55, 570, 648
Hsp92II	CATG	4 cut(s)	215, 274, 393, 446
Kzo9I	GATC	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	76
LweI	GCATC	3 cut(s)	295, 302, 674
MaeI	CTAG	3 cut(s)	117, 536, 731
MalI	GATC	1 cut(s)	517
MboI	GATC	1 cut(s)	515
MboII	GAAGA	4 cut(s)	55, 148, 171, 481
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	5 cut(s)	262, 355, 563, 673, 714
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	4 cut(s)	62, 453, 657, 715
Mph1103I	ATGCAT	1 cut(s)	667
MseI	TTAA	3 cut(s)	240, 599, 751
Mva1269I	GAATGC	2 cut(s)	275, 433
MwoI	GCNNNNNNNGC	3 cut(s)	33, 221, 643
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	515
NlaIII	CATG	4 cut(s)	215, 274, 393, 446
NlaIV	GGNNCC	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	1 cut(s)	215
PctI	GAATGC	2 cut(s)	275, 433
PfeI	GAWTC	3 cut(s)	363, 521, 653
PkrI	GCNGC	2 cut(s)	10, 38
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	142, 439
PsrI	GAACNNNNNNTAC	2 cut(s)	95, 127
PsuI	RGATCY	1 cut(s)	515
RsaI	GTAC	2 cut(s)	113, 166
RsaNI	GTAC	2 cut(s)	112, 165
SaqAI	TTAA	3 cut(s)	240, 599, 751
SatI	GCNGC	2 cut(s)	9, 37
Sau3AI	GATC	1 cut(s)	515
Sau96I	GGNCC	2 cut(s)	142, 439
SchI	GAGTC	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	6 cut(s)	19, 147, 226, 423, 432, 686
SfaNI	GCATC	3 cut(s)	295, 302, 674
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	142, 439
Sse9I	AATT	5 cut(s)	262, 355, 563, 673, 714
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	3 cut(s)	117, 536, 731
StyI	CCWWGG	1 cut(s)	270
TaqI	TCGA	3 cut(s)	101, 458, 677
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	5 cut(s)	262, 355, 563, 673, 714
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	363, 521, 653
Tru1I	TTAA	3 cut(s)	240, 599, 751
Tru9I	TTAA	3 cut(s)	240, 599, 751
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	4 cut(s)	17, 119, 138, 705
VpaK11BI	GGWCC	2 cut(s)	142, 439
XapI	RAATTY	3 cut(s)	262, 355, 563
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	3 cut(s)	117, 536, 731
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.