AT3G13410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002354
Physical Location & Seq
Reverse (-)
4361635 .. 4364316
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13410.1

Sequence Viewer

Length: 966 bp
ATGAAGAAGATTCAAATTGGTGCGGTGGCGCTATTGGTGTTTCTATCTGTGGCCTCTCTCTTTGAAATCGGATTGGCTTCTCCGAACACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAGGCTGTAAATTATCAGGTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTTCTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCTGCCCTTGTTAACACATTGAATAATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCTCCAGAGGAAGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAAGCTTGTCCCAACAATGTAGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAGAAACTTTCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAACAAGGAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCCGAGGGTTCTGAATCGAATAGTCAAGCTGGACAGTCACATTCAGAGCGTGAAAGCTTCTTGGAACTTGTTAGTTCTGTAGAACAATCCGGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACAGTACTCCTGAAATTGCTACTGGCTGTGATGAACTCTGCAAATTTAAGTCATCACTTTTGGAGGGCATACTAGTGGGAATCGTTTTTCTTCTCATCTTGATCAGTGGACTTTGCTGTATGGCGGGTATCGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

34.99

Weight (kDa)

4.64

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ac45-VOA1_TM PF20520 285 - 316 3.9e-08 V0 complex accessory subunit Ac45/VOA1 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 23, 113, 920
AclWI GGATC 3 cut(s) 186, 317, 728
AcsI RAATTY 2 cut(s) 421, 839
AfaI GTAC 2 cut(s) 746, 802
AgsI TTSAA 5 cut(s) 14, 65, 309, 346, 547
AhdI GACNNNNNGTC 1 cut(s) 538
AhlI ACTAGT 1 cut(s) 868
AluBI AGCT 7 cut(s) 241, 362, 449, 641, 669, 719, 779
AluI AGCT 7 cut(s) 241, 362, 449, 641, 669, 719, 779
Alw21I GWGCWC 2 cut(s) 230, 609
Alw26I GTCTC 2 cut(s) 114, 941
AlwI GGATC 3 cut(s) 186, 317, 728
AlwNI CAGNNNCTG 2 cut(s) 95, 326
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 421, 839
AspLEI GCGC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 2 cut(s) 230, 609
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 409, 503
BclI TGATCA 1 cut(s) 897
BcoDI GTCTC 2 cut(s) 114, 941
BcuI ACTAGT 1 cut(s) 868
BfaI CTAG 5 cut(s) 182, 564, 776, 869, 939
BfmI CTRYAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
BmcAI AGTACT 1 cut(s) 802
BmeRI GACNNNNNGTC 1 cut(s) 538
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 2 cut(s) 104, 384
BpuEI CTTGAG 3 cut(s) 186, 263, 939
Bsa29I ATCGAT 1 cut(s) 927
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 615
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bse1I ACTGG 2 cut(s) 121, 823
BseCI ATCGAT 1 cut(s) 927
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 3 cut(s) 148, 420, 514
BseMII CTCAG 3 cut(s) 243, 333, 501
BseNI ACTGG 2 cut(s) 121, 823
BseRI GAGGAG 1 cut(s) 942
BseXI GCAGC 1 cut(s) 382
BshFI GGCC 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 927
BsiHKAI GWGCWC 2 cut(s) 230, 609
BsiSI CCGG 1 cut(s) 702
BslFI GGGAC 1 cut(s) 438
BsmAI GTCTC 2 cut(s) 114, 941
BsmFI GGGAC 1 cut(s) 438
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 230, 609
Bsp143I GATC 5 cut(s) 178, 322, 550, 733, 897
BspACI CCGC 3 cut(s) 23, 113, 920
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 3 cut(s) 242, 332, 500
BspDI ATCGAT 1 cut(s) 927
BspPI GGATC 3 cut(s) 186, 317, 728
BspTNI GGTCTC 1 cut(s) 114
BsrI ACTGG 2 cut(s) 121, 823
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 5 cut(s) 178, 322, 550, 733, 897
Bst4CI ACNGT 4 cut(s) 91, 291, 648, 800
Bst6I CTCTTC 1 cut(s) 562
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 3 cut(s) 229, 319, 487
BstF5I GGATG 3 cut(s) 148, 420, 514
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 5 cut(s) 181, 325, 553, 736, 900
BstMAI GTCTC 2 cut(s) 114, 941
BstMBI GATC 5 cut(s) 178, 322, 550, 733, 897
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 2 cut(s) 178, 322
BstYI RGATCY 2 cut(s) 178, 322
Bsu15I ATCGAT 1 cut(s) 927
BsuRI GGCC 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 927
BtsCI GGATG 3 cut(s) 148, 420, 514
BtsIMutI CAGTG 1 cut(s) 907
Cac8I GCNNGC 1 cut(s) 561
CaiI CAGNNNCTG 2 cut(s) 95, 326
CfoI GCGC 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 927
Csp6I GTAC 2 cut(s) 745, 801
CviAII CATG 1 cut(s) 166
CviQI GTAC 2 cut(s) 745, 801
DdeI CTNAG 3 cut(s) 229, 319, 487
DpnI GATC 5 cut(s) 180, 324, 552, 735, 899
DpnII GATC 5 cut(s) 178, 322, 550, 733, 897
DriI GACNNNNNGTC 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 562
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 562
Eco31I GGTCTC 1 cut(s) 114
FaeI CATG 1 cut(s) 169
FaiI YATR 8 cut(s) 167, 275, 388, 390, 714, 726, 866, 917
FaqI GGGAC 1 cut(s) 438
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 913
FbaI TGATCA 1 cut(s) 897
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 3 cut(s) 155, 427, 521
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 5 cut(s) 182, 564, 776, 869, 939
GlaI GCGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 396
GsuI CTGGAG 2 cut(s) 104, 384
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 702
HhaI GCGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 3 cut(s) 239, 447, 667
HinfI GANTC 8 cut(s) 10, 468, 491, 626, 876, 942, 949, 959
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 1 cut(s) 702
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 3 cut(s) 337, 747, 905
Hpy188III TCNNGA 5 cut(s) 401, 806, 895, 946, 956
Hpy8I GTNNAC 3 cut(s) 337, 747, 905
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 4 cut(s) 91, 291, 648, 800
HpyCH4V TGCA 4 cut(s) 173, 263, 538, 837
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpyF3I CTNAG 3 cut(s) 229, 319, 487
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 897
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 5 cut(s) 178, 322, 550, 733, 897
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 124
MaeI CTAG 5 cut(s) 182, 564, 776, 869, 939
MaeIII GTNAC 3 cut(s) 285, 426, 648
MalI GATC 5 cut(s) 180, 324, 552, 735, 899
MboI GATC 5 cut(s) 178, 322, 550, 733, 897
MboII GAAGA 8 cut(s) 16, 19, 247, 285, 297, 419, 579, 878
MflI RGATCY 2 cut(s) 178, 322
MhlI GDGCHC 2 cut(s) 230, 609
MluCI AATT 7 cut(s) 15, 137, 154, 421, 516, 810, 839
MlyI GAGTC 2 cut(s) 477, 943
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 9 cut(s) 64, 113, 139, 200, 397, 499, 610, 853, 963
MseI TTAA 4 cut(s) 336, 441, 843, 964
MslI CAYNNNNRTG 1 cut(s) 869
MspI CCGG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 785
NdeII GATC 5 cut(s) 178, 322, 550, 733, 897
NlaIII CATG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 648
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 6 cut(s) 10, 491, 626, 876, 942, 959
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 2 cut(s) 476, 943
PpsI GAGTC 2 cut(s) 476, 943
PstNI CAGNNNCTG 2 cut(s) 95, 326
PsuI RGATCY 2 cut(s) 178, 322
RsaI GTAC 2 cut(s) 746, 802
RsaNI GTAC 2 cut(s) 745, 801
RseI CAYNNNNRTG 1 cut(s) 869
SaqAI TTAA 4 cut(s) 336, 441, 843, 964
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 5 cut(s) 178, 322, 550, 733, 897
ScaI AGTACT 1 cut(s) 802
SchI GAGTC 2 cut(s) 477, 943
SduI GDGCHC 2 cut(s) 230, 609
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 3 cut(s) 201, 242, 954
SmoI CTYRAG 3 cut(s) 201, 242, 954
SpeI ACTAGT 1 cut(s) 868
Sse9I AATT 7 cut(s) 15, 137, 154, 421, 516, 810, 839
SsiI CCGC 3 cut(s) 23, 113, 920
SspMI CTAG 5 cut(s) 182, 564, 776, 869, 939
TaaI ACNGT 4 cut(s) 91, 291, 648, 800
TaqI TCGA 3 cut(s) 629, 927, 945
TasI AATT 7 cut(s) 15, 137, 154, 421, 516, 810, 839
TatI WGTACW 1 cut(s) 800
TfiI GAWTC 6 cut(s) 10, 491, 626, 876, 942, 959
Tru1I TTAA 4 cut(s) 336, 441, 843, 964
Tru9I TTAA 4 cut(s) 336, 441, 843, 964
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 3 cut(s) 17, 262, 843
TspRI CASTG 1 cut(s) 907
XapI RAATTY 2 cut(s) 421, 839
XcmI CCANNNNNNNNNTGG 2 cut(s) 128, 373
XspI CTAG 5 cut(s) 182, 564, 776, 869, 939
ZrmI AGTACT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.