Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002354

Physical Location & Seq

Genomic Coordinates Reverse (-)

14413226 .. 14413922

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCTATTGAATCTCCGGTCGAGTCTCCGACTACGTCCTCACCGGGTTGCACGGTTGGTACAGGGTTGCAATCTTCGGATATTTCTGCAAACAAACATGCTAATCCAGCTCTTGTGGACTTGCTCAAAGTCTCTTTCACACAATCAAATTTCTCCATGGCATTCCCCTATATTTCTGCATCAGAGAATGATGCTATGGAAAGTTCTTTAGTGTCAGGGATGTCAGAGATTTGTGGGCAGAATTTTGGATTCAGTAATGTTTGTTTCTCGGAGTCATGCTCTATGTGGTGTGATGATGTTCAAAAGCTTTCAGACCTGCATTCGGTCCATGATTATTTTCTTTTGAGGATGGAGAAGAGACCAAATGGGGAAGCAGATTTGGTGGTGTTCTACCACAAAGGATCTGATTCTAAAAAGGAACTAGAACACCCACATTCAGAGAGTAAAATTTTCTCTGAGATGGTTAGTTTTGTGGATCAGTCTGGGGCAAAATATGCAGTTCTATATGTCTCAGACCCCATTAAATCAATCCAATATCCTTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.98

Weight (kDa)

4.9

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55546 AT3G13410
fragaria_vesca	FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990
malus_domestica	MD03G1001400.v1.1 MD11G1000600.v1.1
prunus_persica	Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1
pyrus_communis	pycom03g00120 pycom11g00090
rosa_chinensis	RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441
rosa_laevigata	RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082
rosa_multiflora	Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093
rosa_roxburghii	Rroxscaffold_1G00000540 Rroxscaffold_7G00215590
rosa_rugosa	Rorug05G0489000 Rorug05G0489100
rosa_samantha	Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500
rosa_wichuraiana	Rw5G050390 Rw7G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	324
AclWI	GGATC	2 cut(s)	409, 483
AcsI	RAATTY	3 cut(s)	148, 241, 447
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	11, 302
AluBI	AGCT	2 cut(s)	110, 307
AluI	AGCT	2 cut(s)	110, 307
Alw26I	GTCTC	4 cut(s)	30, 136, 352, 514
AlwI	GGATC	2 cut(s)	409, 483
ApoI	RAATTY	3 cut(s)	148, 241, 447
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	325
BccI	CCATC	2 cut(s)	343, 454
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	4 cut(s)	30, 136, 352, 514
BfaI	CTAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	181, 188
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpuMI	CCSGG	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	225, 354
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	447, 525
Bsh1285I	CGRYCG	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	17, 44
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	4 cut(s)	30, 136, 352, 514
BsmI	GAATGC	2 cut(s)	161, 319
Bso31I	GGTCTC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	401, 475
Bsp19I	CCATGG	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	448, 524
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	409, 483
BspTNI	GGTCTC	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	401, 475
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	456, 511
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	225, 354
BstKTI	GATC	2 cut(s)	404, 478
BstMAI	GTCTC	4 cut(s)	30, 136, 352, 514
BstMBI	GATC	2 cut(s)	401, 475
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 494
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	225, 354
BveI	ACCTGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	4 cut(s)	98, 157, 276, 329
CviJI	RGCY	2 cut(s)	110, 307
CviKI_1	RGCY	2 cut(s)	110, 307
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	456, 511
DpnI	GATC	2 cut(s)	403, 477
DpnII	GATC	2 cut(s)	401, 475
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	4 cut(s)	101, 160, 279, 332
FatI	CATG	4 cut(s)	97, 156, 275, 328
FokI	GGATG	2 cut(s)	232, 361
FspBI	CTAG	1 cut(s)	422
HapII	CCGG	2 cut(s)	17, 44
Hin1II	CATG	4 cut(s)	101, 160, 279, 332
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	5 cut(s)	11, 23, 249, 272, 407
HpaII	CCGG	2 cut(s)	17, 44
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	549
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	6 cut(s)	51, 70, 89, 179, 319, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 494
HpyF3I	CTNAG	2 cut(s)	456, 511
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	101, 160, 279, 332
Kzo9I	GATC	2 cut(s)	401, 475
LpnPI	CCDG	7 cut(s)	30, 48, 57, 120, 201, 329, 468
LweI	GCATC	2 cut(s)	181, 188
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	35
MalI	GATC	2 cut(s)	403, 477
MboI	GATC	2 cut(s)	401, 475
MboII	GAAGA	2 cut(s)	66, 367
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	3 cut(s)	148, 241, 447
MlyI	GAGTC	2 cut(s)	32, 281
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	2 cut(s)	49, 339
MseI	TTAA	1 cut(s)	522
MspI	CCGG	2 cut(s)	17, 44
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	2 cut(s)	161, 319
MwoI	GCNNNNNNNGC	2 cut(s)	107, 494
NciI	CCSGG	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	401, 475
NlaIII	CATG	4 cut(s)	101, 160, 279, 332
NspI	RCATGY	1 cut(s)	101
PctI	GAATGC	2 cut(s)	161, 319
PfeI	GAWTC	3 cut(s)	11, 249, 407
PflFI	GACNNNGTC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	31, 280
PpsI	GAGTC	2 cut(s)	31, 280
PspPI	GGNCC	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	401
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	522
Sau3AI	GATC	2 cut(s)	401, 475
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	2 cut(s)	32, 281
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	4 cut(s)	38, 112, 309, 318
SfaNI	GCATC	2 cut(s)	181, 188
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	3 cut(s)	148, 241, 447
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	21
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	148, 241, 447
TfiI	GAWTC	3 cut(s)	11, 249, 407
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	3 cut(s)	148, 241, 447
XceI	RCATGY	1 cut(s)	101
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.