Rh7AG125500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002354
Physical Location & Seq
Forward (+)
9860439 .. 9860996
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG125500.1

Sequence Viewer

Length: 558 bp
ATGGCATTCCCCTGTATTTCTGCATCAGAGAAGGATGCTATGGAAAGTTCTTTAGTGTCAGGGATGTCAGAGATTTGTGGGCAGAATTTTGGATTCAGTAATGTTTGTTTCTCGGAGTCATGCTCAATGTGGGGTGATGATGTTCAAAAGCTTTCAGACCTGCATTCGGTCCATGATTATCTTCTTTCGAGGATGGAGAAGAGACCAACTGGGGAAGCAGATTTGGTGGTGTTCTGCCACAAAGGATCTGATTCTAAAAAGGAACTAGAACCCCACATTCAGAGAGTAAAAATTTCTCTGAGAAGGTTAGTTTTGTGGATCAGTCTGGGGCAAAATATGCAGTTCTATATGTTTCAGACCACATTAAATCAATCCTATATCCTTCTCATTGAGAGTTTCTCGCTGAAAGTGCCTCAGGATTCAGGAAATGCATCAGCCAATTCGACAACCTGTGATGAAGTTTGTCAGATCAAATCATCAATTCTGGAGGGAGTTCTAGTTGCAATTGTTCTGCTTATAATCTTAATATCAAGCCATCTGCTGTATGATGGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.59

Weight (kDa)

5.28

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 168
AclWI GGATC 2 cut(s) 253, 326
AcsI RAATTY 2 cut(s) 85, 291
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 2 cut(s) 253, 326
ApoI RAATTY 2 cut(s) 85, 291
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 169
AxyI CCTNAGG 1 cut(s) 414
BccI CCATC 3 cut(s) 187, 542, 543
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 266, 497
BfuAI ACCTGC 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 3 cut(s) 25, 32, 440
BmuI ACTGGG 1 cut(s) 219
BplI GAGNNNNNCTC 4 cut(s) 107, 139, 383, 415
BpmI CTGGAG 1 cut(s) 506
BsaI GGTCTC 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 414
BseGI GGATG 3 cut(s) 40, 69, 198
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 290, 428
BseNI ACTGG 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 196
BsmI GAATGC 2 cut(s) 5, 163
Bso31I GGTCTC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 245, 318, 468
BspCNI CTCAG 2 cut(s) 291, 427
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 2 cut(s) 253, 326
BspTNI GGTCTC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 214
BssMI GATC 3 cut(s) 245, 318, 468
Bst6I CTCTTC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 299, 414
BstF5I GGATG 3 cut(s) 40, 69, 198
BstKTI GATC 3 cut(s) 248, 321, 471
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 3 cut(s) 245, 318, 468
BstMWI GCNNNNNNNGC 2 cut(s) 337, 409
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
Bsu36I CCTNAGG 1 cut(s) 414
BtsCI GGATG 3 cut(s) 40, 69, 198
BveI ACCTGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 169
CviAII CATG 2 cut(s) 120, 173
CviJI RGCY 3 cut(s) 151, 437, 534
CviKI_1 RGCY 3 cut(s) 151, 437, 534
DdeI CTNAG 2 cut(s) 299, 414
DpnI GATC 3 cut(s) 247, 320, 470
DpnII GATC 3 cut(s) 245, 318, 468
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 169
Eco81I CCTNAGG 1 cut(s) 414
EcoT22I ATGCAT 1 cut(s) 433
FaeI CATG 2 cut(s) 123, 176
FaiI YATR 9 cut(s) 41, 121, 174, 338, 348, 350, 378, 518, 546
FatI CATG 2 cut(s) 119, 172
FokI GGATG 3 cut(s) 47, 76, 205
FspBI CTAG 2 cut(s) 266, 497
GsuI CTGGAG 1 cut(s) 506
Hin1II CATG 2 cut(s) 123, 176
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 4 cut(s) 93, 116, 251, 419
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 9 cut(s) 28, 70, 115, 157, 250, 282, 300, 357, 468
Hpy188III TCNNGA 3 cut(s) 416, 423, 485
HpyAV CCTTC 3 cut(s) 25, 297, 392
HpyCH4V TGCA 5 cut(s) 23, 163, 340, 431, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 409
HpyF3I CTNAG 2 cut(s) 299, 414
Hsp92II CATG 2 cut(s) 123, 176
Kzo9I GATC 3 cut(s) 245, 318, 468
LpnPI CCDG 9 cut(s) 25, 45, 173, 195, 311, 401, 408, 463, 470
LweI GCATC 3 cut(s) 25, 32, 440
MaeI CTAG 2 cut(s) 266, 497
MalI GATC 3 cut(s) 247, 320, 470
MboI GATC 3 cut(s) 245, 318, 468
MboII GAAGA 2 cut(s) 173, 211
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 1 cut(s) 245
MluCI AATT 5 cut(s) 85, 291, 439, 480, 504
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 3 cut(s) 183, 423, 481
Mph1103I ATGCAT 1 cut(s) 433
MseI TTAA 2 cut(s) 365, 524
MunI CAATTG 1 cut(s) 504
Mva1269I GAATGC 2 cut(s) 5, 163
MwoI GCNNNNNNNGC 2 cut(s) 337, 409
NdeII GATC 3 cut(s) 245, 318, 468
NlaIII CATG 2 cut(s) 123, 176
NsiI ATGCAT 1 cut(s) 433
PctI GAATGC 2 cut(s) 5, 163
PfeI GAWTC 3 cut(s) 93, 251, 419
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PsiI TTATAA 1 cut(s) 518
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 1 cut(s) 245
SaqAI TTAA 2 cut(s) 365, 524
Sau3AI GATC 3 cut(s) 245, 318, 468
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 125
SetI ASST 4 cut(s) 153, 162, 308, 452
SfaNI GCATC 3 cut(s) 25, 32, 440
SinI GGWCC 1 cut(s) 169
Sse9I AATT 5 cut(s) 85, 291, 439, 480, 504
SspMI CTAG 2 cut(s) 266, 497
TaqI TCGA 2 cut(s) 188, 443
TaqII GACCGA 1 cut(s) 157
TasI AATT 5 cut(s) 85, 291, 439, 480, 504
TfiI GAWTC 3 cut(s) 93, 251, 419
Tru1I TTAA 2 cut(s) 365, 524
Tru9I TTAA 2 cut(s) 365, 524
TspDTI ATGAA 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 2 cut(s) 85, 291
XspI CTAG 2 cut(s) 266, 497
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.