Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002354

Physical Location & Seq

Genomic Coordinates Reverse (-)

134410 .. 138224

Gene Structure 3815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00120.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGCCTGGTGGTTGCAAAACGTGCGAGATTTGACCCAAAAAAAAAAGAGGCGGCCATAACTGGGCAATTGGTTCTCCATCCAAATTTTGATTTCTTAATTTCCGACAAAACCACAAAATTCCTCAGCCTCATCCCTCATCCGGTCATCCCCCATCCCCCAGAACCAAAGAAGCAAAGAAGCAAAGAAGCAAAGAAGCAAAGAAGCAAAGAAGCAAAGAAGCAAAGAAGCAAAGAAGCAACGAAGATGAAGGCAGCTCACCCACTGGTGCTAGTTTTTGTGGGTTTGCTTGCGCTTGCAGTAGCACCTTCCACTTCAGCTTCCACAGTGCCAGCTTTCCTCTGGTCCCCTCATTATCATCAAGTCAAGGCAGCCGTAAATTATCAGACAATATCCCCCAAGGATTTAGCAAAGTCTCTTCTTTCCGAAGGTGGCTGGTCCAACGTACTGTGTTCCGCAAATAAAGTTCATCAGCCTTTGGAGCTGGCTCTTGTCTTCGTGGGTGGAGAGTTGCAATCTTCAGATATTCCTGCAAACAGACATGCAGATCCAGCTCTTGTGGACTTCCTCAAAACCTCTTTCTCAGGATCCAATTTCTCCATGGCCTTCCCTTTTGTTGCTGCACCGGAGGAGGATTCTATGGAAAATTCTTTGGTGTTAGAGATTTCAGAGACTTGTGGGCAGGATTTGGGATTCAGTAATGTTACTTTATTTGGGTCATGCTCTATTGAGGGTGAAAATTTTCAAAAGCTCGCAAATGTGCAATCATTCCATGATTATCTTGTTTCAGGGGTGGAGAAGAGATCCAAAGGGGAAGTAGATTTGGTTGTGTTCTGCCATAAACGATCTGAATCTTCCAAAGAACTTGACCAAACACATTCTGAGGGTAAAGTTTTTTCTGACCTTGTTAATTCCATGGATCGATCGTTAATGCAAAGAAATGCATCAGCCAATTCGACGGCCTGTGATGAAGTTTGTCAGATAAAATCATCTCTTCTAGAGGGACTTCTAGTTGGAATCGTTTTGCTTATAATCTTAATATCGGGCATTTGCTGTATGATGGGGATTGACACTCCGACGAGATTTGAGTTGCCCCAAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

40.2

Weight (kDa)

7.16

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55546 AT3G13410
fragaria_vesca	FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990
malus_domestica	MD03G1001400.v1.1 MD11G1000600.v1.1
prunus_persica	Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1
pyrus_communis	pycom03g00120 pycom11g00090
rosa_chinensis	RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441
rosa_laevigata	RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082
rosa_multiflora	Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093
rosa_roxburghii	Rroxscaffold_1G00000540 Rroxscaffold_7G00215590
rosa_rugosa	Rorug05G0489000 Rorug05G0489100
rosa_samantha	Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500
rosa_wichuraiana	Rw5G050390 Rw7G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1031
AciI	CCGC	2 cut(s)	53, 456
AclWI	GGATC	5 cut(s)	542, 582, 595, 798, 927
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	4 cut(s)	85, 119, 646, 739
AcuI	CTGAAG	2 cut(s)	300, 504
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	2 cut(s)	63, 142
AgsI	TTSAA	1 cut(s)	746
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	6 cut(s)	257, 320, 335, 484, 554, 751
AluI	AGCT	6 cut(s)	257, 320, 335, 484, 554, 751
Alw26I	GTCTC	2 cut(s)	420, 665
AlwI	GGATC	5 cut(s)	542, 582, 595, 798, 927
AoxI	GGCC	4 cut(s)	4, 54, 603, 960
ApeKI	GCWGC	3 cut(s)	254, 371, 620
ApoI	RAATTY	4 cut(s)	85, 119, 646, 739
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	3 cut(s)	4, 345, 438
AsuHPI	GGTGA	2 cut(s)	251, 746
AvaII	GGWCC	2 cut(s)	345, 438
BamHI	GGATCC	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	487
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	266, 383, 607
BccI	CCATC	3 cut(s)	87, 162, 1054
BceAI	ACGGC	2 cut(s)	359, 975
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	2 cut(s)	420, 665
BfaI	CTAG	3 cut(s)	272, 998, 1010
BisI	GCNGC	4 cut(s)	54, 255, 372, 621
BlsI	GCNGC	4 cut(s)	55, 256, 373, 622
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	2 cut(s)	345, 438
BmgT120I	GGNCC	3 cut(s)	4, 345, 438
BmiI	GGNNCC	2 cut(s)	347, 589
BmrFI	CCNGG	1 cut(s)	8
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	953
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	487
Bpu10I	CCTNAGC	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	922
BsaBI	GATNNNNATC	1 cut(s)	850
BsaJI	CCNNGG	3 cut(s)	399, 600, 915
BsaWI	WCCGGW	2 cut(s)	142, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 142
Bse1I	ACTGG	2 cut(s)	67, 270
Bse8I	GATNNNNATC	1 cut(s)	850
BseBI	CCWGG	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	922
BseDI	CCNNGG	3 cut(s)	399, 600, 915
BseGI	GGATG	5 cut(s)	79, 132, 139, 147, 154
BseJI	GATNNNNATC	1 cut(s)	850
BseLI	CCNNNNNNNGG	2 cut(s)	63, 142
BseMII	CTCAG	3 cut(s)	139, 597, 873
BseNI	ACTGG	2 cut(s)	67, 270
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	3 cut(s)	266, 383, 607
BsgI	GTGCAG	1 cut(s)	606
Bsh1285I	CGRYCG	1 cut(s)	926
BshFI	GGCC	4 cut(s)	6, 56, 605, 962
BshVI	ATCGAT	1 cut(s)	922
BsiEI	CGRYCG	1 cut(s)	926
BsiSI	CCGG	2 cut(s)	143, 626
BslFI	GGGAC	2 cut(s)	331, 1017
BslI	CCNNNNNNNGG	2 cut(s)	63, 142
BsmAI	GTCTC	2 cut(s)	420, 665
BsmFI	GGGAC	2 cut(s)	331, 1017
BsnI	GGCC	4 cut(s)	6, 56, 605, 962
Bsp143I	GATC	6 cut(s)	547, 587, 803, 845, 919, 923
Bsp19I	CCATGG	2 cut(s)	600, 915
BspACI	CCGC	2 cut(s)	53, 456
BspANI	GGCC	4 cut(s)	6, 56, 605, 962
BspCNI	CTCAG	3 cut(s)	138, 596, 874
BspDI	ATCGAT	1 cut(s)	922
BspLI	GGNNCC	2 cut(s)	347, 589
BspPI	GGATC	5 cut(s)	542, 582, 595, 798, 927
BsrI	ACTGG	2 cut(s)	67, 270
BssECI	CCNNGG	3 cut(s)	399, 600, 915
BssMI	GATC	6 cut(s)	547, 587, 803, 845, 919, 923
BssT1I	CCWWGG	3 cut(s)	399, 600, 915
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	328, 450
Bst6I	CTCTTC	3 cut(s)	423, 794, 999
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	5 cut(s)	291, 297, 333, 486, 753
BstDEI	CTNAG	3 cut(s)	125, 583, 882
BstDSI	CCRYGG	2 cut(s)	600, 915
BstF5I	GGATG	5 cut(s)	79, 132, 139, 147, 154
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	6 cut(s)	550, 590, 806, 848, 922, 926
BstMAI	GTCTC	2 cut(s)	420, 665
BstMBI	GATC	6 cut(s)	547, 587, 803, 845, 919, 923
BstMCI	CGRYCG	1 cut(s)	926
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 481, 551
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	266, 383, 607
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	3 cut(s)	547, 587, 803
BstYI	RGATCY	3 cut(s)	547, 587, 803
Bsu15I	ATCGAT	1 cut(s)	922
BsuRI	GGCC	4 cut(s)	6, 56, 605, 962
BsuTUI	ATCGAT	1 cut(s)	922
BtgI	CCRYGG	2 cut(s)	600, 915
BtsCI	GGATG	5 cut(s)	79, 132, 139, 147, 154
BtsIMutI	CAGTG	2 cut(s)	263, 333
Cac8I	GCNNGC	5 cut(s)	291, 297, 333, 486, 753
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	3 cut(s)	4, 345, 438
ClaI	ATCGAT	1 cut(s)	922
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	5 cut(s)	542, 601, 720, 773, 916
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	3 cut(s)	125, 583, 882
DpnI	GATC	6 cut(s)	549, 589, 805, 847, 921, 925
DpnII	GATC	6 cut(s)	547, 587, 803, 845, 919, 923
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	3 cut(s)	423, 794, 999
EarI	CTCTTC	3 cut(s)	423, 794, 999
Eco130I	CCWWGG	3 cut(s)	399, 600, 915
Eco47I	GGWCC	2 cut(s)	345, 438
Eco57I	CTGAAG	2 cut(s)	300, 504
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	3 cut(s)	399, 600, 915
EcoT22I	ATGCAT	1 cut(s)	946
ErhI	CCWWGG	3 cut(s)	399, 600, 915
FaeI	CATG	5 cut(s)	545, 604, 723, 776, 919
FaqI	GGGAC	2 cut(s)	331, 1017
FatI	CATG	5 cut(s)	541, 600, 719, 772, 915
Fnu4HI	GCNGC	4 cut(s)	54, 255, 372, 621
FokI	GGATG	5 cut(s)	66, 119, 126, 134, 141
Fsp4HI	GCNGC	4 cut(s)	54, 255, 372, 621
FspBI	CTAG	3 cut(s)	272, 998, 1010
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	4 cut(s)	54, 255, 372, 621
HaeIII	GGCC	4 cut(s)	6, 56, 605, 962
HapII	CCGG	2 cut(s)	143, 626
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	5 cut(s)	545, 604, 723, 776, 919
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	5 cut(s)	635, 693, 851, 1017, 1100
HpaII	CCGG	2 cut(s)	143, 626
HphI	GGTGA	2 cut(s)	251, 746
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188III	TCNNGA	3 cut(s)	585, 998, 1104
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	2 cut(s)	961, 1081
HpyAV	CCTTC	4 cut(s)	244, 318, 422, 616
HpyCH4III	ACNGT	2 cut(s)	328, 450
HpyCH4IV	ACGT	2 cut(s)	22, 444
HpyCH4V	TGCA	9 cut(s)	17, 299, 514, 533, 545, 623, 763, 934, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 481, 551
HpyF3I	CTNAG	3 cut(s)	125, 583, 882
HpySE526I	ACGT	2 cut(s)	22, 444
Hsp92II	CATG	5 cut(s)	545, 604, 723, 776, 919
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	6 cut(s)	547, 587, 803, 845, 919, 923
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	3 cut(s)	266, 383, 607
LweI	GCATC	1 cut(s)	953
MaeI	CTAG	3 cut(s)	272, 998, 1010
MaeII	ACGT	2 cut(s)	22, 444
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	6 cut(s)	549, 589, 805, 847, 921, 925
MboI	GATC	6 cut(s)	547, 587, 803, 845, 919, 923
MboII	GAAGA	7 cut(s)	256, 410, 487, 510, 811, 846, 986
MfeI	CAATTG	1 cut(s)	68
MflI	RGATCY	3 cut(s)	547, 587, 803
MmeI	TCCRAC	4 cut(s)	129, 465, 994, 1100
Mph1103I	ATGCAT	1 cut(s)	946
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	4 cut(s)	98, 909, 929, 1037
MspI	CCGG	2 cut(s)	143, 626
MspR9I	CCNGG	1 cut(s)	8
MunI	CAATTG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	23, 481, 551
NcoI	CCATGG	2 cut(s)	600, 915
NdeII	GATC	6 cut(s)	547, 587, 803, 845, 919, 923
NlaIII	CATG	5 cut(s)	545, 604, 723, 776, 919
NlaIV	GGNNCC	2 cut(s)	347, 589
NsiI	ATGCAT	1 cut(s)	946
NspI	RCATGY	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	4 cut(s)	635, 693, 851, 1017
PkrI	GCNGC	4 cut(s)	55, 256, 373, 622
Ple19I	CGATCG	1 cut(s)	926
PsiI	TTATAA	1 cut(s)	1031
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	347, 589
PspPI	GGNCC	3 cut(s)	4, 345, 438
PsuI	RGATCY	3 cut(s)	547, 587, 803
PvuI	CGATCG	1 cut(s)	926
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SaqAI	TTAA	4 cut(s)	98, 909, 929, 1037
SatI	GCNGC	4 cut(s)	54, 255, 372, 621
Sau3AI	GATC	6 cut(s)	547, 587, 803, 845, 919, 923
Sau96I	GGNCC	3 cut(s)	4, 345, 438
ScrFI	CCNGG	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	953
SinI	GGWCC	2 cut(s)	345, 438
SsiI	CCGC	2 cut(s)	53, 456
SspMI	CTAG	3 cut(s)	272, 998, 1010
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	3 cut(s)	399, 600, 915
TaaI	ACNGT	2 cut(s)	328, 450
TaiI	ACGT	2 cut(s)	25, 447
TaqI	TCGA	2 cut(s)	922, 956
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	4 cut(s)	635, 693, 851, 1017
Tru1I	TTAA	4 cut(s)	98, 909, 929, 1037
Tru9I	TTAA	4 cut(s)	98, 909, 929, 1037
TscAI	CASTG	2 cut(s)	270, 333
TseI	GCWGC	3 cut(s)	254, 371, 620
TspDTI	ATGAA	3 cut(s)	263, 458, 984
TspRI	CASTG	2 cut(s)	270, 333
VpaK11BI	GGWCC	2 cut(s)	345, 438
XapI	RAATTY	4 cut(s)	85, 119, 646, 739
XbaI	TCTAGA	1 cut(s)	997
XceI	RCATGY	1 cut(s)	545
XcmI	CCANNNNNNNNNTGG	2 cut(s)	339, 598
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	3 cut(s)	272, 998, 1010
Zsp2I	ATGCAT	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.