Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000372.1

Orthogroup ID

OG0002354

Physical Location & Seq

Genomic Coordinates Forward (+)

360506 .. 365019

Gene Structure 4514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000372.1_g000093.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atgaagaagcatgcactccctagctcatacgctatttgtcttattgcccttaagttttttgagacaattcatcaacatcttacccttgacccttctaatgggggatctctttttttacctcagccctcaggaccaaagatgaaggctgctctacctttgctagcatatttggtggctttgttgcttgcctctcagattccttcagggcttccgatgccctccacttacaacacagtgccagctttcctctggtcaccgcactaccatcaagtcaaggcagccgttaattaccagactatctctccaaaggatttagcaaagtctgtgctttcagaagggggctggtcgaacttgctgtgccctagcaatgaaggtcatcagcctttggaccttgctcttgtcttcattggtacagagttgcaatcttcggatatttctgcaagcaaacatgctgatccagctcttgtggacttactcaaagtctctttcacacaatcaaatttctccatggcatttccctatattgctgcatcagagaaggatgctatggaaagttctttagtgtcagggatgtcagagatctgtgggcagaattttggattcaataatgttcgtttctcggagtcatgctctatggacagtgataatgttcaaaagctttcagacctgcattcggtccatgattatcttctttcgaggatggagaaaagatccagtggggaagcagatttggtggtgttctgccacaaaggatctgattcctcaaaggaactagaacacccacattcagagagtgaaattttctctgagattattagttctgtggatcagtctggggcgaaatatgccgttctgtatgtttcagaccccattaaatcaatccaatatccttctcatcgagagttagaaaggtttctcgctgaaagtgcctcaggaaatgcatcagccaattcgacagcctgtgatgaagtttgtcagatcaaatcatcacttctggagggacttctagttgcaattgttctgcttataatcttaatatcaggcatctgctgtatgatgggcattgatactcccacgagatttgaggcaccccaagagtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

39.79

Weight (kDa)

5.25

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55546 AT3G13410
fragaria_vesca	FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990
malus_domestica	MD03G1001400.v1.1 MD11G1000600.v1.1
prunus_persica	Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1
pyrus_communis	pycom03g00120 pycom11g00090
rosa_chinensis	RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441
rosa_laevigata	RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082
rosa_multiflora	Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093
rosa_roxburghii	Rroxscaffold_1G00000540 Rroxscaffold_7G00215590
rosa_rugosa	Rorug05G0489000 Rorug05G0489100
rosa_samantha	Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500
rosa_wichuraiana	Rw5G050390 Rw7G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1028
Acc36I	ACCTGC	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	1087
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	5 cut(s)	112, 449, 705, 760, 834
AcsI	RAATTY	3 cut(s)	499, 592, 798
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	98, 673
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	604, 653
AluBI	AGCT	4 cut(s)	24, 242, 461, 658
AluI	AGCT	4 cut(s)	24, 242, 461, 658
Alw26I	GTCTC	2 cut(s)	56, 487
AlwI	GGATC	5 cut(s)	112, 449, 705, 760, 834
ApeKI	GCWGC	3 cut(s)	146, 278, 527
ApoI	RAATTY	3 cut(s)	499, 592, 798
Asp700I	GAANNNNTTC	1 cut(s)	912
AspS9I	GGNCC	3 cut(s)	131, 388, 676
AsuHPI	GGTGA	1 cut(s)	246
AsuNHI	GCTAGC	1 cut(s)	160
AvaII	GGWCC	3 cut(s)	131, 388, 676
AxyI	CCTNAGG	2 cut(s)	127, 931
BaeGI	GKGCMC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	1087
BauI	CACGAG	1 cut(s)	1075
BbsI	GAAGAC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	133, 290, 514
BccI	CCATC	3 cut(s)	273, 694, 1051
BceAI	ACGGC	2 cut(s)	266, 833
BcoDI	GTCTC	2 cut(s)	56, 487
BfaI	CTAG	5 cut(s)	21, 161, 363, 773, 1007
BfrI	CTTAAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	675
BglII	AGATCT	1 cut(s)	579
BisI	GCNGC	3 cut(s)	147, 279, 528
BlsI	GCNGC	3 cut(s)	148, 280, 529
Bme18I	GGWCC	3 cut(s)	131, 388, 676
BmgT120I	GGNCC	3 cut(s)	131, 388, 676
BmiI	GGNNCC	1 cut(s)	1089
BmsI	GCATC	5 cut(s)	204, 532, 539, 950, 1053
BmtI	GCTAGC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
BpmI	CTGGAG	1 cut(s)	1016
Bpu10I	CCTNAGC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 673
Bse1I	ACTGG	1 cut(s)	714
Bse21I	CCTNAGG	2 cut(s)	127, 931
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	3 cut(s)	547, 576, 705
BseLI	CCNNNNNNNGG	2 cut(s)	98, 673
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	5 cut(s)	134, 141, 206, 798, 945
BseNI	ACTGG	1 cut(s)	714
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	133, 290, 514
BshNI	GGYRCC	1 cut(s)	1087
BslFI	GGGAC	1 cut(s)	1014
BslI	CCNNNNNNNGG	2 cut(s)	98, 673
BsmAI	GTCTC	2 cut(s)	56, 487
BsmFI	GGGAC	1 cut(s)	1014
BsmI	GAATGC	1 cut(s)	670
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	7 cut(s)	104, 454, 579, 710, 752, 826, 978
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	5 cut(s)	133, 140, 205, 799, 944
BspLI	GGNNCC	1 cut(s)	1089
BspMI	ACCTGC	1 cut(s)	675
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	5 cut(s)	112, 449, 705, 760, 834
BspT107I	GGYRCC	1 cut(s)	1087
BspTI	CTTAAG	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	714
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	7 cut(s)	104, 454, 579, 710, 752, 826, 978
BssSI	CACGAG	1 cut(s)	1075
BssT1I	CCWWGG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	1075
Bst4CI	ACNGT	2 cut(s)	235, 641
BstAFI	CTTAAG	1 cut(s)	50
BstC8I	GCNNGC	5 cut(s)	12, 162, 186, 240, 442
BstDEI	CTNAG	5 cut(s)	120, 127, 192, 807, 931
BstDSI	CCRYGG	1 cut(s)	507
BstEII	GGTNACC	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	547, 576, 705
BstKTI	GATC	7 cut(s)	107, 457, 582, 713, 755, 829, 981
BstMAI	GTCTC	2 cut(s)	56, 487
BstMBI	GATC	7 cut(s)	104, 454, 579, 710, 752, 826, 978
BstMWI	GCNNNNNNNGC	4 cut(s)	214, 458, 845, 926
BstNSI	RCATGY	2 cut(s)	14, 452
BstPI	GGTNACC	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	133, 290, 514
BstV2I	GAAGAC	1 cut(s)	394
BstX2I	RGATCY	4 cut(s)	104, 579, 710, 752
BstYI	RGATCY	4 cut(s)	104, 579, 710, 752
Bsu36I	CCTNAGG	2 cut(s)	127, 931
BtgI	CCRYGG	1 cut(s)	507
BtsCI	GGATG	3 cut(s)	547, 576, 705
BtsIMutI	CAGTG	3 cut(s)	240, 646, 721
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	5 cut(s)	12, 162, 186, 240, 442
Cfr13I	GGNCC	3 cut(s)	131, 388, 676
Csp6I	GTAC	1 cut(s)	411
CspCI	CAANNNNNGTGG	2 cut(s)	1063, 1098
CviAII	CATG	5 cut(s)	11, 449, 508, 627, 680
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	5 cut(s)	120, 127, 192, 807, 931
DpnI	GATC	7 cut(s)	106, 456, 581, 712, 754, 828, 980
DpnII	GATC	7 cut(s)	104, 454, 579, 710, 752, 826, 978
Eco130I	CCWWGG	1 cut(s)	507
Eco47I	GGWCC	3 cut(s)	131, 388, 676
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	2 cut(s)	127, 931
Eco91I	GGTNACC	1 cut(s)	252
EcoO65I	GGTNACC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	507
EcoT22I	ATGCAT	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	5 cut(s)	14, 452, 511, 630, 683
FaqI	GGGAC	1 cut(s)	1014
FatI	CATG	5 cut(s)	10, 448, 507, 626, 679
Fnu4HI	GCNGC	3 cut(s)	147, 279, 528
FokI	GGATG	3 cut(s)	554, 583, 712
Fsp4HI	GCNGC	3 cut(s)	147, 279, 528
FspBI	CTAG	5 cut(s)	21, 161, 363, 773, 1007
GluI	GCNGC	3 cut(s)	147, 279, 528
GsuI	CTGGAG	1 cut(s)	1016
Hin1II	CATG	5 cut(s)	14, 452, 511, 630, 683
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	5 cut(s)	196, 600, 623, 758, 1097
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188III	TCNNGA	4 cut(s)	129, 899, 933, 995
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	7 cut(s)	102, 136, 210, 329, 365, 532, 900
HpyCH4III	ACNGT	2 cut(s)	235, 641
HpyCH4V	TGCA	7 cut(s)	14, 421, 440, 530, 670, 941, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	214, 458, 845, 926
HpyF3I	CTNAG	5 cut(s)	120, 127, 192, 807, 931
Hsp92II	CATG	5 cut(s)	14, 452, 511, 630, 683
Kzo9I	GATC	7 cut(s)	104, 454, 579, 710, 752, 826, 978
Lsp1109I	GCAGC	3 cut(s)	133, 290, 514
LweI	GCATC	5 cut(s)	204, 532, 539, 950, 1053
MaeI	CTAG	5 cut(s)	21, 161, 363, 773, 1007
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	7 cut(s)	106, 456, 581, 712, 754, 828, 980
MboI	GATC	7 cut(s)	104, 454, 579, 710, 752, 826, 978
MboII	GAAGA	4 cut(s)	16, 394, 417, 680
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	4 cut(s)	104, 579, 710, 752
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	7 cut(s)	66, 286, 499, 592, 798, 949, 1014
MlyI	GAGTC	1 cut(s)	632
Mph1103I	ATGCAT	1 cut(s)	943
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	5 cut(s)	51, 285, 873, 1034, 1102
MspCI	CTTAAG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	1014
Mva1269I	GAATGC	1 cut(s)	670
MwoI	GCNNNNNNNGC	4 cut(s)	214, 458, 845, 926
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	7 cut(s)	104, 454, 579, 710, 752, 826, 978
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	5 cut(s)	14, 452, 511, 630, 683
NlaIV	GGNNCC	1 cut(s)	1089
NmuCI	GTSAC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	943
NspI	RCATGY	2 cut(s)	14, 452
PaeI	GCATGC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	3 cut(s)	196, 600, 758
PkrI	GCNGC	3 cut(s)	148, 280, 529
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PsiI	TTATAA	1 cut(s)	1028
PspEI	GGTNACC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	1089
PspPI	GGNCC	3 cut(s)	131, 388, 676
PsuI	RGATCY	4 cut(s)	104, 579, 710, 752
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	5 cut(s)	51, 285, 873, 1034, 1102
SatI	GCNGC	3 cut(s)	147, 279, 528
Sau3AI	GATC	7 cut(s)	104, 454, 579, 710, 752, 826, 978
Sau96I	GGNCC	3 cut(s)	131, 388, 676
SchI	GAGTC	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	362
SfaNI	GCATC	5 cut(s)	204, 532, 539, 950, 1053
SinI	GGWCC	3 cut(s)	131, 388, 676
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	7 cut(s)	66, 286, 499, 592, 798, 949, 1014
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	5 cut(s)	21, 161, 363, 773, 1007
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	235, 641
TaqI	TCGA	4 cut(s)	347, 695, 898, 953
TaqII	GACCGA	1 cut(s)	664
TasI	AATT	7 cut(s)	66, 286, 499, 592, 798, 949, 1014
TfiI	GAWTC	3 cut(s)	196, 600, 758
Tru1I	TTAA	5 cut(s)	51, 285, 873, 1034, 1102
Tru9I	TTAA	5 cut(s)	51, 285, 873, 1034, 1102
TscAI	CASTG	3 cut(s)	240, 646, 721
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	3 cut(s)	146, 278, 527
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	6 cut(s)	17, 59, 155, 384, 394, 981
TspRI	CASTG	3 cut(s)	240, 646, 721
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	3 cut(s)	131, 388, 676
XapI	RAATTY	3 cut(s)	499, 592, 798
XceI	RCATGY	2 cut(s)	14, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	5 cut(s)	21, 161, 363, 773, 1007
Zsp2I	ATGCAT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.