Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002354

Physical Location & Seq

Genomic Coordinates Forward (+)

38187596 .. 38191897

Gene Structure 4302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45990.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGGGTCTGTTAGCTTATTTGGTGGCCTTTTTGGTGGTTGCCTCTGGGATCCCTTCAGGACTGTCTTACAACACAGCGCCAGCTTTCCTCTGGTCACCACATTACCATCATGTCAAGGCAGCCGTCAATTACCAGACTATCTCTCCAAAGGATTTGGCAAAGTCTGTGCTTTCAGAAGGGGGCTGGTCGAACTTGCTGTGTCCTAGCAACGAAGTTCATCAGCCTTTGGATCTTGCTCTTGTCTTTGTTGGTACAGAGTTGCAATCTTCGGATATTTCTGCAAGCAAACATGCTGATCCAGCTCTTGTGGACTTGCTCAAAGTCTCTTTCACACGATCAAATTTCTCTATGGCATTCCCCTATATTTCTACATCAGAGAAGGATACCATGGAAAGTTCTCTATTGTCAGGGATGTCAGATATTTGTGGGCAGAATTTTGGACTCAGTAATGTTCGTTTCTCAGAGTCATGCTCTATGGAGGGTGATAATGTTCAAAAGCTTTCAGACCTGCAATCAGTCCGTAATTATCTTGTTTCGAGGATGGAGAAGAGATCAAATGGTGAAGCAGATTTGGTGGTGTTCTGCCACAGAGGATCTGATTCTTCAAACGAACTAGAACACCCACATCCAGAGAGTAAAATTTTCTCTGAGATTATTAGTTCCGTGGATCAGTCTGGTGCAAAGTATGCAGTTCTTTATGTTTCAGACCCCATTAAATCAATCCAGTATCCTTCTCATCGAGAGTTAGAAAGGTTTCTTGCTGAAAGTTCTGGAAATGCATCAGCCAATTCGACAGCCTGTGATGAAGTTTGTCAGATCAAATCATCACTTCTGGAGGGACTTCTAGTTAAAGAATCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

31.35

Weight (kDa)

5.25

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55546 AT3G13410
fragaria_vesca	FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990
malus_domestica	MD03G1001400.v1.1 MD11G1000600.v1.1
prunus_persica	Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1
pyrus_communis	pycom03g00120 pycom11g00090
rosa_chinensis	RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441
rosa_laevigata	RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082
rosa_multiflora	Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093
rosa_roxburghii	Rroxscaffold_1G00000540 Rroxscaffold_7G00215590
rosa_rugosa	Rorug05G0489000 Rorug05G0489100
rosa_samantha	Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500
rosa_wichuraiana	Rw5G050390 Rw7G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	865
Acc36I	ACCTGC	1 cut(s)	519
AclWI	GGATC	6 cut(s)	46, 59, 240, 293, 604, 678
AcsI	RAATTY	3 cut(s)	343, 436, 642
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	497, 609
AluBI	AGCT	4 cut(s)	17, 86, 305, 502
AluI	AGCT	4 cut(s)	17, 86, 305, 502
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	6 cut(s)	46, 59, 240, 293, 604, 678
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	3 cut(s)	343, 436, 642
Asp700I	GAANNNNTTC	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	3 cut(s)	90, 497, 575
BamHI	GGATCC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	2 cut(s)	117, 538
BceAI	ACGGC	1 cut(s)	110
BciVI	GTATCC	2 cut(s)	379, 741
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	3 cut(s)	207, 617, 848
BfoI	RGCGCY	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	519
BfuI	GTATCC	2 cut(s)	379, 741
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	857
BsaJI	CCNNGG	2 cut(s)	390, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bse1I	ACTGG	1 cut(s)	727
BseDI	CCNNGG	2 cut(s)	390, 666
BseGI	GGATG	3 cut(s)	420, 549, 628
BseMII	CTCAG	3 cut(s)	460, 477, 642
BseNI	ACTGG	1 cut(s)	727
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	855
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	855
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	8 cut(s)	51, 232, 298, 338, 554, 596, 670, 819
Bsp19I	CCATGG	1 cut(s)	390
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	3 cut(s)	459, 476, 643
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	519
BspPI	GGATC	6 cut(s)	46, 59, 240, 293, 604, 678
BsrI	ACTGG	1 cut(s)	727
BssECI	CCNNGG	2 cut(s)	390, 666
BssMI	GATC	8 cut(s)	51, 232, 298, 338, 554, 596, 670, 819
BssT1I	CCWWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstC8I	GCNNGC	2 cut(s)	84, 286
BstDEI	CTNAG	3 cut(s)	446, 463, 651
BstDSI	CCRYGG	2 cut(s)	390, 666
BstEII	GGTNACC	1 cut(s)	96
BstF5I	GGATG	3 cut(s)	420, 549, 628
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	8 cut(s)	54, 235, 301, 341, 557, 599, 673, 822
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	8 cut(s)	51, 232, 298, 338, 554, 596, 670, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 689
BstNSI	RCATGY	1 cut(s)	296
BstPI	GGTNACC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	134
BstX2I	RGATCY	3 cut(s)	51, 232, 596
BstYI	RGATCY	3 cut(s)	51, 232, 596
BsuI	GTATCC	2 cut(s)	379, 741
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	2 cut(s)	390, 666
BtsCI	GGATG	3 cut(s)	420, 549, 628
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	84, 286
CfoI	GCGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	4 cut(s)	113, 293, 391, 471
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	3 cut(s)	446, 463, 651
DpnI	GATC	8 cut(s)	53, 234, 300, 340, 556, 598, 672, 821
DpnII	GATC	8 cut(s)	51, 232, 298, 338, 554, 596, 670, 819
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	42
Eco91I	GGTNACC	1 cut(s)	96
EcoO65I	GGTNACC	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	784
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	4 cut(s)	116, 296, 394, 474
FaqI	GGGAC	1 cut(s)	855
FatI	CATG	4 cut(s)	112, 292, 390, 470
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	3 cut(s)	427, 556, 615
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	3 cut(s)	207, 617, 848
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	857
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	4 cut(s)	116, 296, 394, 474
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	4 cut(s)	444, 467, 602, 857
HphI	GGTGA	3 cut(s)	90, 497, 575
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188III	TCNNGA	5 cut(s)	60, 632, 743, 774, 836
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	4 cut(s)	66, 173, 376, 744
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	6 cut(s)	265, 284, 514, 683, 692, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 689
HpyF3I	CTNAG	3 cut(s)	446, 463, 651
Hsp92II	CATG	4 cut(s)	116, 296, 394, 474
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	8 cut(s)	51, 232, 298, 338, 554, 596, 670, 819
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	791
MaeI	CTAG	3 cut(s)	207, 617, 848
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	8 cut(s)	53, 234, 300, 340, 556, 598, 672, 821
MboI	GATC	8 cut(s)	51, 232, 298, 338, 554, 596, 670, 819
MboII	GAAGA	3 cut(s)	261, 562, 597
MflI	RGATCY	3 cut(s)	51, 232, 596
MluCI	AATT	6 cut(s)	130, 343, 436, 526, 642, 790
MlyI	GAGTC	2 cut(s)	438, 476
MnlI	CCTC	6 cut(s)	55, 101, 475, 534, 587, 832
Mph1103I	ATGCAT	1 cut(s)	784
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	2 cut(s)	717, 852
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	302, 689
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	8 cut(s)	51, 232, 298, 338, 554, 596, 670, 819
NlaIII	CATG	4 cut(s)	116, 296, 394, 474
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	1 cut(s)	296
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	602, 857
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	438, 475
PpsI	GAGTC	2 cut(s)	438, 475
PsiI	TTATAA	1 cut(s)	865
PspEI	GGTNACC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	53
PsuI	RGATCY	3 cut(s)	51, 232, 596
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	717, 852
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	8 cut(s)	51, 232, 298, 338, 554, 596, 670, 819
SchI	GAGTC	2 cut(s)	438, 476
SetI	ASST	6 cut(s)	19, 88, 307, 504, 513, 758
SfaNI	GCATC	1 cut(s)	791
Sse9I	AATT	6 cut(s)	130, 343, 436, 526, 642, 790
SspMI	CTAG	3 cut(s)	207, 617, 848
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	4 cut(s)	191, 539, 742, 794
TasI	AATT	6 cut(s)	130, 343, 436, 526, 642, 790
TfiI	GAWTC	2 cut(s)	602, 857
Tru1I	TTAA	2 cut(s)	717, 852
Tru9I	TTAA	2 cut(s)	717, 852
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	3 cut(s)	17, 209, 822
TspGWI	ACGGA	2 cut(s)	512, 655
XapI	RAATTY	3 cut(s)	343, 436, 642
XceI	RCATGY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	3 cut(s)	207, 617, 848
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.