Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002354

Physical Location & Seq

Genomic Coordinates Reverse (-)

179551 .. 185072

Gene Structure 5522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G000900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAGGCAGCTCTGCCTTTGCTACTATGTTTGGTGGCTTTGCTTGTTGCGCCTCAGATTCTCTCGGGGTTTCCCTTGCCTTCCACTTCCACAGTGCCAGCTTTCCTCTGGTCACCTCATTACCATCAAGTGAAGGCAGCTATAAATTATCAGACTATCTCTCCAAAGGATTTAGCTAAGTCTGTTCTTTCAGAAGGTGGCTGGTCAAACGTACTATGCTCTGGAAACAAATTTCATCAGCCTTTGGAGCTGGCTCTTGTCTTCGTTGGTAGAGAGTTACAATCTTCAGATATTCCTGCAAACAAACATGCAGATCCAGCCCTTGTGGACTTGCTCAAAGGTTCTTTCACAGGATCCAATTTCTCAATGGCCTTCCCATATGTTGCTGCACCAGAGGAGGATGCTATGGAAAATTCTTTGGTGTCAGGGATTTCGGAGACTTGTGGGCAGGATTTTGGATTCAGTAACGTTGCTTTCTTGGAGTCGTGCTCTATTGAGGGTGAAAATTTTCAAAAGCTTGCAAACCTGCAATCATTCCATGATTATCTTGGTTCAAGGACGGAGAAGAGATCCAATGGAGAAGTAGATTTGGTTGTGTTCTGCCATAAAGAATCTGGTTCTTCCAAAGAACTTGACCAAACACATACGGAGGGTAAAATTTTTTCCGAGCTTATTAGTTCCATGGATCAGTCTGGGGCAAAATATGGAGTTCTATATGTTTCAGATCCCAGTAAGTCAATCCAATATCCTTCTTATCGAGAATTGCAAAGGTTTCTTGCTGAAAGTGCTTCAGGAAATGCATCAGCCAATTCAACAGCCTGTGATGAAGTTTGTCAGATCAAATCATCTCTTCTAGAGGGACTTCTAGTTGGAATCGTTTTGCTTATAATCTTAATATCAGGAATTTGTTGTATGATGGGCATCGACACTCCAACAAGATTTGAGGCACCCCAAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

34.53

Weight (kDa)

4.89

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55546 AT3G13410
fragaria_vesca	FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990
malus_domestica	MD03G1001400.v1.1 MD11G1000600.v1.1
prunus_persica	Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1
pyrus_communis	pycom03g00120 pycom11g00090
rosa_chinensis	RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441
rosa_laevigata	RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082
rosa_multiflora	Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093
rosa_roxburghii	Rroxscaffold_1G00000540 Rroxscaffold_7G00215590
rosa_rugosa	Rorug05G0489000 Rorug05G0489100
rosa_samantha	Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500
rosa_wichuraiana	Rw5G050390 Rw7G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
Acc36I	ACCTGC	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	946
AclI	AACGTT	1 cut(s)	468
AclWI	GGATC	6 cut(s)	308, 348, 361, 564, 693, 719
AcsI	RAATTY	5 cut(s)	230, 412, 505, 657, 903
AcuI	CTGAAG	2 cut(s)	270, 774
AfaI	GTAC	1 cut(s)	213
AgsI	TTSAA	3 cut(s)	512, 555, 813
AluBI	AGCT	7 cut(s)	11, 101, 140, 176, 250, 517, 670
AluI	AGCT	7 cut(s)	11, 101, 140, 176, 250, 517, 670
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	6 cut(s)	308, 348, 361, 564, 693, 719
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	3 cut(s)	8, 137, 386
ApoI	RAATTY	5 cut(s)	230, 412, 505, 657, 903
Asp700I	GAANNNNTTC	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	105, 512
AvaI	CYCGRG	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	946
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	3 cut(s)	20, 149, 373
BccI	CCATC	2 cut(s)	132, 910
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	854, 866
BfuAI	ACCTGC	1 cut(s)	534
BisI	GCNGC	3 cut(s)	9, 138, 387
BlsI	GCNGC	3 cut(s)	10, 139, 388
BmeT110I	CYCGRG	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	355, 948
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	3 cut(s)	391, 809, 930
BmuI	ACTGGG	1 cut(s)	723
BpiI	GAAGAC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BsaBI	GATNNNNATC	1 cut(s)	920
BsaJI	CCNNGG	1 cut(s)	681
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse1I	ACTGG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	920
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	1 cut(s)	406
BseJI	GATNNNNATC	1 cut(s)	920
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	729
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	3 cut(s)	20, 149, 373
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	946
BsiHKAI	GWGCWC	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	873
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	873
BsnI	GGCC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	6 cut(s)	313, 353, 569, 685, 724, 837
Bsp19I	CCATGG	1 cut(s)	681
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	355, 948
BspMI	ACCTGC	1 cut(s)	534
BspPI	GGATC	6 cut(s)	308, 348, 361, 564, 693, 719
BspT107I	GGYRCC	1 cut(s)	946
BsrI	ACTGG	1 cut(s)	729
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	6 cut(s)	313, 353, 569, 685, 724, 837
BssT1I	CCWWGG	1 cut(s)	681
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	2 cut(s)	560, 855
BstC8I	GCNNGC	3 cut(s)	99, 252, 519
BstDEI	CTNAG	2 cut(s)	54, 177
BstDSI	CCRYGG	1 cut(s)	681
BstEII	GGTNACC	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	6 cut(s)	316, 356, 572, 688, 727, 840
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	6 cut(s)	313, 353, 569, 685, 724, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 247, 317, 785
BstNSI	RCATGY	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	20, 149, 373
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	4 cut(s)	313, 353, 569, 724
BstYI	RGATCY	4 cut(s)	313, 353, 569, 724
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	99
BveI	ACCTGC	1 cut(s)	534
Cac8I	GCNNGC	3 cut(s)	99, 252, 519
CfoI	GCGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	3 cut(s)	308, 539, 682
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	54, 177
DpnI	GATC	6 cut(s)	315, 355, 571, 687, 726, 839
DpnII	GATC	6 cut(s)	313, 353, 569, 685, 724, 837
Eam1104I	CTCTTC	2 cut(s)	560, 855
EarI	CTCTTC	2 cut(s)	560, 855
Eco130I	CCWWGG	1 cut(s)	681
Eco57I	CTGAAG	2 cut(s)	270, 774
Eco88I	CYCGRG	1 cut(s)	64
Eco91I	GGTNACC	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	681
EcoT22I	ATGCAT	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	3 cut(s)	311, 542, 685
FaqI	GGGAC	1 cut(s)	873
FatI	CATG	3 cut(s)	307, 538, 681
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	9, 138, 387
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	3 cut(s)	9, 138, 387
FspBI	CTAG	2 cut(s)	854, 866
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	9, 138, 387
HaeIII	GGCC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	311, 542, 685
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	6 cut(s)	58, 459, 482, 611, 873, 956
HphI	GGTGA	2 cut(s)	105, 512
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	8 cut(s)	57, 153, 193, 289, 436, 667, 724, 837
Hpy188III	TCNNGA	6 cut(s)	222, 758, 792, 854, 900, 960
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	5 cut(s)	90, 127, 188, 382, 759
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	2 cut(s)	210, 468
HpyCH4V	TGCA	7 cut(s)	299, 311, 389, 521, 529, 766, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 247, 317, 785
HpyF3I	CTNAG	2 cut(s)	54, 177
HpySE526I	ACGT	2 cut(s)	210, 468
Hsp92II	CATG	3 cut(s)	311, 542, 685
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	6 cut(s)	313, 353, 569, 685, 724, 837
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	20, 149, 373
LweI	GCATC	3 cut(s)	391, 809, 930
MaeI	CTAG	2 cut(s)	854, 866
MaeII	ACGT	2 cut(s)	210, 468
MaeIII	GTNAC	3 cut(s)	111, 276, 464
MalI	GATC	6 cut(s)	315, 355, 571, 687, 726, 839
MboI	GATC	6 cut(s)	313, 353, 569, 685, 724, 837
MboII	GAAGA	5 cut(s)	253, 276, 577, 612, 842
MflI	RGATCY	4 cut(s)	313, 353, 569, 724
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	9 cut(s)	145, 230, 358, 412, 505, 657, 761, 808, 903
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	850, 956
MnlI	CCTC	9 cut(s)	63, 116, 126, 388, 391, 490, 643, 850, 937
Mph1103I	ATGCAT	1 cut(s)	802
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	1 cut(s)	893
MwoI	GCNNNNNNNGC	4 cut(s)	49, 247, 317, 785
NcoI	CCATGG	1 cut(s)	681
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	6 cut(s)	313, 353, 569, 685, 724, 837
NlaIII	CATG	3 cut(s)	311, 542, 685
NlaIV	GGNNCC	2 cut(s)	355, 948
NmuCI	GTSAC	1 cut(s)	111
NsiI	ATGCAT	1 cut(s)	802
NspI	RCATGY	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	4 cut(s)	58, 459, 611, 873
PkrI	GCNGC	3 cut(s)	10, 139, 388
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	887
Psp1406I	AACGTT	1 cut(s)	468
PspEI	GGTNACC	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	355, 948
PsuI	RGATCY	4 cut(s)	313, 353, 569, 724
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	893
SatI	GCNGC	3 cut(s)	9, 138, 387
Sau3AI	GATC	6 cut(s)	313, 353, 569, 685, 724, 837
SchI	GAGTC	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	3 cut(s)	391, 809, 930
Sse9I	AATT	9 cut(s)	145, 230, 358, 412, 505, 657, 761, 808, 903
SspMI	CTAG	2 cut(s)	854, 866
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	2 cut(s)	213, 471
TaqI	TCGA	2 cut(s)	757, 924
TasI	AATT	9 cut(s)	145, 230, 358, 412, 505, 657, 761, 808, 903
TfiI	GAWTC	4 cut(s)	58, 459, 611, 873
Tru1I	TTAA	1 cut(s)	893
Tru9I	TTAA	1 cut(s)	893
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	3 cut(s)	8, 137, 386
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	3 cut(s)	17, 224, 840
TspGWI	ACGGA	2 cut(s)	575, 662
TspRI	CASTG	1 cut(s)	99
XapI	RAATTY	5 cut(s)	230, 412, 505, 657, 903
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	4 cut(s)	105, 364, 545, 611
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	2 cut(s)	854, 866
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.