Rh5CG589100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002354
Physical Location & Seq
Forward (+)
83411700 .. 83416158
4459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG589100.1

Sequence Viewer

Length: 819 bp
ATGCTTTCAAATAACAGAGTCAAGGCAGCCATTAATTACCAGACTATCTCTCCAAAGGATTTAGCAAAGTCTGTGCTTTCAGAAGGGGGCTGGTCGAACTTGCTGTGCCCTAGCAATGAAGTTCATCAGCCTTTGGACCTTGCTCTTGTCTTCATTGGTACAGAGTTGCAATCTTCGGATATTTCTGCAAGCAAACATGCTGATCCAGCTCTTGTGGACTTACTCAAAGTCTCTTTCACACAATCAAATTTCTCCATGGCATTTCCCTATATTGCTGCATCAGAGAAGGATGCTATGGAAAGTTCTTTAGTGTCAGGGATGTCAGAGATCTGTGGGCAGAATTTTGGATTCAATAATGTTCGTTTCTCGGAGTCATGCTCTATGGACAGTGATAATGTTCAAAAGCTTTCAGACCTGCATTCGGTCCATGATTATCTTCTTTCGAGGATGGAGAAAAGATCAAGTGGGGAAGCAGATTTGGTGGTGTTCTGCCACAAAGGATCTGATTCCTCAAAGGAACTAGAACACCCACATTCAGAGAGTGAAATTTTCTCTGAGATTATTAGTTCTGTGGATCAGTCTGGGGCGAAATATGCCGTTCTGTATGTTTCAGACCCCATTAAATCAATCCAATATCCTTCTCATCGAGAGTTAGAAAGGTTTCTCGCTGAAAGTGCCTCAGGAAATGCATCAGCCAATTCGACAGCCTGTGATGAAGTTTGTCAGATCAAATCATCACTTCTGGAGGGACTTCTAGTTGTAAGTTTATCTTTTGTTTTTCCTCTTTTGGTTATTCTGTGGTTAAGTGTTTGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

29.7

Weight (kDa)

4.92

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 423
AclWI GGATC 3 cut(s) 197, 508, 582
AcsI RAATTY 3 cut(s) 247, 340, 546
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 3 cut(s) 9, 352, 401
AluBI AGCT 2 cut(s) 209, 406
AluI AGCT 2 cut(s) 209, 406
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 3 cut(s) 197, 508, 582
ApeKI GCWGC 2 cut(s) 26, 275
ApoI RAATTY 3 cut(s) 247, 340, 546
AseI ATTAAT 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 660
AspS9I GGNCC 2 cut(s) 136, 424
AvaII GGWCC 2 cut(s) 136, 424
AxyI CCTNAGG 1 cut(s) 679
BaeGI GKGCMC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 38, 262
BccI CCATC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 581
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 3 cut(s) 111, 521, 755
BfuAI ACCTGC 1 cut(s) 423
BglII AGATCT 1 cut(s) 327
BisI GCNGC 2 cut(s) 27, 276
BlsI GCNGC 2 cut(s) 28, 277
Bme18I GGWCC 2 cut(s) 136, 424
BmgT120I GGNCC 2 cut(s) 136, 424
BmsI GCATC 3 cut(s) 280, 287, 698
BpiI GAAGAC 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpmI CTGGAG 1 cut(s) 764
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse21I CCTNAGG 1 cut(s) 679
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 3 cut(s) 295, 324, 453
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 546, 693
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 2 cut(s) 38, 262
BslFI GGGAC 1 cut(s) 762
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 762
BsmI GAATGC 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 6 cut(s) 202, 327, 458, 500, 574, 726
Bsp19I CCATGG 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 547, 692
BspMI ACCTGC 1 cut(s) 423
BspPI GGATC 3 cut(s) 197, 508, 582
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 6 cut(s) 202, 327, 458, 500, 574, 726
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 555, 679
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 295, 324, 453
BstKTI GATC 6 cut(s) 205, 330, 461, 503, 577, 729
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 6 cut(s) 202, 327, 458, 500, 574, 726
BstMWI GCNNNNNNNGC 3 cut(s) 206, 593, 674
BstNSI RCATGY 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 38, 262
BstV2I GAAGAC 1 cut(s) 142
BstX2I RGATCY 2 cut(s) 327, 500
BstYI RGATCY 2 cut(s) 327, 500
Bsu36I CCTNAGG 1 cut(s) 679
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 3 cut(s) 295, 324, 453
BtsIMutI CAGTG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 136, 424
Csp6I GTAC 1 cut(s) 159
CviAII CATG 4 cut(s) 197, 256, 375, 428
CviJI RGCY 7 cut(s) 29, 90, 130, 209, 406, 695, 707
CviKI_1 RGCY 7 cut(s) 29, 90, 130, 209, 406, 695, 707
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 2 cut(s) 555, 679
DpnI GATC 6 cut(s) 204, 329, 460, 502, 576, 728
DpnII GATC 6 cut(s) 202, 327, 458, 500, 574, 726
Eco130I CCWWGG 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 136, 424
Eco81I CCTNAGG 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 691
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 200, 259, 378, 431
FaiI YATR 9 cut(s) 198, 257, 270, 296, 376, 383, 429, 594, 606
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FaqI GGGAC 1 cut(s) 762
FatI CATG 4 cut(s) 196, 255, 374, 427
Fnu4HI GCNGC 2 cut(s) 27, 276
FokI GGATG 3 cut(s) 302, 331, 460
Fsp4HI GCNGC 2 cut(s) 27, 276
FspBI CTAG 3 cut(s) 111, 521, 755
GluI GCNGC 2 cut(s) 27, 276
GsuI CTGGAG 1 cut(s) 764
Hin1II CATG 4 cut(s) 200, 259, 378, 431
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 4 cut(s) 18, 348, 371, 506
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 647, 681, 743
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 3 cut(s) 77, 280, 648
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 5 cut(s) 169, 188, 278, 418, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 593, 674
HpyF3I CTNAG 2 cut(s) 555, 679
Hsp92II CATG 4 cut(s) 200, 259, 378, 431
Kzo9I GATC 6 cut(s) 202, 327, 458, 500, 574, 726
LpnPI CCDG 9 cut(s) 53, 76, 219, 300, 428, 567, 666, 721, 728
Lsp1109I GCAGC 2 cut(s) 38, 262
LweI GCATC 3 cut(s) 280, 287, 698
MaeI CTAG 3 cut(s) 111, 521, 755
MalI GATC 6 cut(s) 204, 329, 460, 502, 576, 728
MboI GATC 6 cut(s) 202, 327, 458, 500, 574, 726
MboII GAAGA 3 cut(s) 142, 165, 428
MflI RGATCY 2 cut(s) 327, 500
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 5 cut(s) 34, 247, 340, 546, 697
MlyI GAGTC 2 cut(s) 27, 380
MnlI CCTC 5 cut(s) 438, 520, 688, 739, 792
Mph1103I ATGCAT 1 cut(s) 691
MroXI GAANNNNTTC 1 cut(s) 660
MseI TTAA 3 cut(s) 33, 621, 803
Mva1269I GAATGC 1 cut(s) 418
MwoI GCNNNNNNNGC 3 cut(s) 206, 593, 674
NcoI CCATGG 1 cut(s) 255
NdeII GATC 6 cut(s) 202, 327, 458, 500, 574, 726
NlaIII CATG 4 cut(s) 200, 259, 378, 431
NsiI ATGCAT 1 cut(s) 691
NspI RCATGY 1 cut(s) 200
PctI GAATGC 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 2 cut(s) 348, 506
PkrI GCNGC 2 cut(s) 28, 277
PleI GAGTC 2 cut(s) 26, 379
PpsI GAGTC 2 cut(s) 26, 379
PshBI ATTAAT 1 cut(s) 33
PspPI GGNCC 2 cut(s) 136, 424
PsuI RGATCY 2 cut(s) 327, 500
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SaqAI TTAA 3 cut(s) 33, 621, 803
SatI GCNGC 2 cut(s) 27, 276
Sau3AI GATC 6 cut(s) 202, 327, 458, 500, 574, 726
Sau96I GGNCC 2 cut(s) 136, 424
SchI GAGTC 2 cut(s) 27, 380
SduI GDGCHC 1 cut(s) 110
SetI ASST 5 cut(s) 141, 211, 408, 417, 662
SfaNI GCATC 3 cut(s) 280, 287, 698
SinI GGWCC 2 cut(s) 136, 424
Sse9I AATT 5 cut(s) 34, 247, 340, 546, 697
SspMI CTAG 3 cut(s) 111, 521, 755
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 4 cut(s) 95, 443, 646, 701
TaqII GACCGA 1 cut(s) 412
TasI AATT 5 cut(s) 34, 247, 340, 546, 697
TfiI GAWTC 2 cut(s) 348, 506
Tru1I TTAA 3 cut(s) 33, 621, 803
Tru9I TTAA 3 cut(s) 33, 621, 803
TscAI CASTG 1 cut(s) 394
TseI GCWGC 2 cut(s) 26, 275
TspDTI ATGAA 4 cut(s) 113, 132, 142, 729
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 2 cut(s) 136, 424
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 3 cut(s) 247, 340, 546
XceI RCATGY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 3 cut(s) 111, 521, 755
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.