RchiOBHm_Chr7g0192441

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002354
Physical Location & Seq
Forward (+)
10930198 .. 10930854
657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17201

Sequence Viewer

Length: 522 bp
ATGAAGTTCATCAGCCTTTGGACCTTGCTCGTCTTCGTTGGTACAGAGTTGCAATCTTCAGATATTTCTGCAAGCAAACTCTCCAAACATGCTTATCCAGCTCTTGTGGACTTGCTTAAAGTCTCTTTCACACAATCAAATTTCTCCATGGCATTCCCCTGTATTTCTGCATCAGAGAAGGATGCTATGGAAAGTTCTTTAGTGTCAGGGATGTCAGAGATTTGTGGGCAGAATTTTGGATTCAGTAATGTTTGTTTCTTGGAGTCATGCTCAATGTTTGTTTCAGACCTGCATTCGGTCCATGATTATATTCTTTCGAGGATGGAGAAGAGACCAAATGGGGAAGCAGATTTGGTGGTGTTCTGCCACAAAGGATCTGATTCTAAAAAGGAACTAGAACCCCCACATTCAGAGAGTAAAAAATTCTCTGAGATGGTTAGTTTTGTGGATCAGTCTGGGGCAAAATATGCAGTTCTATATGTTTCAGACCCCATTAAATCAATCCAATATCCTTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.17

Weight (kDa)

5.63

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 297
AclWI GGATC 2 cut(s) 382, 456
AcsI RAATTY 3 cut(s) 139, 232, 422
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 295
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 127, 325
AlwI GGATC 2 cut(s) 382, 456
ApoI RAATTY 3 cut(s) 139, 232, 422
AspS9I GGNCC 2 cut(s) 21, 298
AvaII GGWCC 2 cut(s) 21, 298
BbsI GAAGAC 1 cut(s) 25
BccI CCATC 2 cut(s) 316, 427
BcoDI GTCTC 2 cut(s) 127, 325
BfaI CTAG 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 297
Bme18I GGWCC 2 cut(s) 21, 298
BmgT120I GGNCC 2 cut(s) 21, 298
BmsI GCATC 2 cut(s) 172, 179
BpiI GAAGAC 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 3 cut(s) 187, 216, 327
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 2 cut(s) 127, 325
BsmI GAATGC 2 cut(s) 152, 292
Bso31I GGTCTC 1 cut(s) 325
Bsp143I GATC 2 cut(s) 374, 448
Bsp19I CCATGG 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 421
BspMI ACCTGC 1 cut(s) 297
BspPI GGATC 2 cut(s) 382, 456
BspTNI GGTCTC 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 374, 448
BssT1I CCWWGG 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 323
BstAPI GCANNNNNTGC 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 187, 216, 327
BstKTI GATC 2 cut(s) 377, 451
BstMAI GTCTC 2 cut(s) 127, 325
BstMBI GATC 2 cut(s) 374, 448
BstMWI GCNNNNNNNGC 2 cut(s) 98, 467
BstNSI RCATGY 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 3 cut(s) 187, 216, 327
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 21, 298
Csp6I GTAC 1 cut(s) 42
CviAII CATG 4 cut(s) 89, 148, 267, 302
CviJI RGCY 2 cut(s) 15, 101
CviKI_1 RGCY 2 cut(s) 15, 101
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 429
DpnI GATC 2 cut(s) 376, 450
DpnII GATC 2 cut(s) 374, 448
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 325
Eco47I GGWCC 2 cut(s) 21, 298
Eco57I CTGAAG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 92, 151, 270, 305
FaiI YATR 9 cut(s) 90, 149, 188, 268, 303, 309, 468, 478, 480
FatI CATG 4 cut(s) 88, 147, 266, 301
FokI GGATG 3 cut(s) 194, 223, 334
FspBI CTAG 1 cut(s) 395
Hin1II CATG 4 cut(s) 92, 151, 270, 305
HinfI GANTC 3 cut(s) 240, 263, 380
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 8 cut(s) 61, 175, 217, 286, 379, 412, 430, 487
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 172, 522
HpyCH4V TGCA 5 cut(s) 52, 71, 170, 292, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 467
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 4 cut(s) 92, 151, 270, 305
Kzo9I GATC 2 cut(s) 374, 448
LpnPI CCDG 5 cut(s) 111, 172, 192, 302, 441
LweI GCATC 2 cut(s) 172, 179
MaeI CTAG 1 cut(s) 395
MalI GATC 2 cut(s) 376, 450
MboI GATC 2 cut(s) 374, 448
MboII GAAGA 3 cut(s) 25, 48, 340
MflI RGATCY 1 cut(s) 374
MluCI AATT 3 cut(s) 139, 232, 422
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 1 cut(s) 312
MseI TTAA 2 cut(s) 117, 495
Mva1269I GAATGC 2 cut(s) 152, 292
MwoI GCNNNNNNNGC 2 cut(s) 98, 467
NcoI CCATGG 1 cut(s) 147
NdeII GATC 2 cut(s) 374, 448
NlaIII CATG 4 cut(s) 92, 151, 270, 305
NspI RCATGY 1 cut(s) 92
PctI GAATGC 2 cut(s) 152, 292
PfeI GAWTC 2 cut(s) 240, 380
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PspPI GGNCC 2 cut(s) 21, 298
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 117, 495
Sau3AI GATC 2 cut(s) 374, 448
Sau96I GGNCC 2 cut(s) 21, 298
SchI GAGTC 1 cut(s) 272
SetI ASST 3 cut(s) 26, 103, 291
SfaNI GCATC 2 cut(s) 172, 179
SinI GGWCC 2 cut(s) 21, 298
Sse9I AATT 3 cut(s) 139, 232, 422
SspMI CTAG 1 cut(s) 395
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 1 cut(s) 317
TaqII GACCGA 1 cut(s) 286
TasI AATT 3 cut(s) 139, 232, 422
TfiI GAWTC 2 cut(s) 240, 380
Tru1I TTAA 2 cut(s) 117, 495
Tru9I TTAA 2 cut(s) 117, 495
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 21, 298
XapI RAATTY 3 cut(s) 139, 232, 422
XceI RCATGY 1 cut(s) 92
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.