Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002354

Physical Location & Seq

Genomic Coordinates Reverse (-)

96979 .. 99372

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00090.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAGGCAGCTCAGCCTCTGATGCTAGTTTTGGTGGGTTTGCTTGCGCTTGCAGGAGCACCTTCCACTTCAGCTTCCACAGTGCCAGCTTTCCTCTGGTCCCCTCATTACCATATAGTCAAGGCAGCCGTAAATTATCAGACAATATCCCCCAAGGATTTAGCAAAGTCTCTTCTTACCGAAGGTGGCTGGTCCAACGTACTGTGCTCTGCAAACAACGTTCATCAGCCTCTGGAGCTGGCTCTTGTCTTTGTGGGTCAGGAGTTACAATCTTCAGATATTCCTGCAAACAGACATGCAGATCCAGCTCTTGTGGACTTGCTGAAAACCTCTTTCTCAGGATCCAATTTCTCCATGGCCTTCCCTTATGTTGCTGCACCGGAGGATGATTCTATGGAAAATTCTTTGGTGTCAGAGATTTCAGAGACTTGTGGACAGGATTTAGGACTCAGTAATGTTGCTTTATTGGGGTCATGCTCTATTGAGGGTGAAAATGTTCAAAAGCTCACAAATGTGCAATCATTCCATGATTACCTTGTTTCAAGGATGGAGAAGAGATCCAATGGGGAAGTAGATTTGGTTGTGTTCTGCCATAAAGGATCTGAATCTTCCAAAGAACTTGACCAACCACATTCTGAAGGTAAAGTTTTTTCTGAGCTTGTTAATTCCTTGGATCGATCCGGGGCAAAGTATGGAGTTCTATATGTTTCAGATCCCAGTAAGTCGATCCAATATCCTTCTCATCGAGAATTAGAAAGGTTTCTGGCCGAAAGTGGTTCAGGAAATGCATCAGCCAATTCTACGGCCTGTGATGAAGTTTGTCTATTAAAATCATCTCTTCTAGAGGGACTTCTAGTTGGAATCGTTTTGCTTATAATCTTAATATCGGGCATTTGCTGTATGATGGGGATTGACACTCCAACGAGATTTGAGACGCCCCAAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

33.86

Weight (kDa)

4.83

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55546 AT3G13410
fragaria_vesca	FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990 FvH4_3g45990
malus_domestica	MD03G1001400.v1.1 MD11G1000600.v1.1
prunus_persica	Prupe.6G000900_v2.0.a1 Prupe.6G000900_v2.0.a1
pyrus_communis	pycom03g00120 pycom11g00090
rosa_chinensis	RchiOBHm_Chr4g0398051 RchiOBHm_Chr5g0084101 RchiOBHm_Chr7g0192441
rosa_laevigata	RLG00000004367 RLG00000008074 RLG00000008858 RLG00000014509 RLG00000016748 RLG00000018971 RLG00000028663 RLG00000030057 RLG00000035035 RLG00000037082
rosa_multiflora	Rmu_sc0005650.1_g000007 Rmu_ssc0000372.1_g000093
rosa_roxburghii	Rroxscaffold_1G00000540 Rroxscaffold_7G00215590
rosa_rugosa	Rorug05G0489000 Rorug05G0489100
rosa_samantha	Rh3DG104400 Rh5BG567300 Rh5CG359700 Rh5CG589100 Rh5DG290500 Rh5DG575500 Rh7AG125500 Rh7CG129500
rosa_wichuraiana	Rw5G050390 Rw7G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	875
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	9 cut(s)	296, 336, 349, 552, 607, 672, 681, 707, 721
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	3 cut(s)	54, 258, 657
AcyI	GRCGYC	1 cut(s)	935
AfaI	GTAC	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	500, 543
AleI	CACNNNNGTG	1 cut(s)	512
AluBI	AGCT	7 cut(s)	11, 74, 89, 238, 308, 505, 658
AluI	AGCT	7 cut(s)	11, 74, 89, 238, 308, 505, 658
Alw21I	GWGCWC	2 cut(s)	61, 209
Alw26I	GTCTC	3 cut(s)	174, 419, 926
AlwI	GGATC	9 cut(s)	296, 336, 349, 552, 607, 672, 681, 707, 721
AlwNI	CAGNNNCTG	2 cut(s)	19, 232
AoxI	GGCC	3 cut(s)	357, 765, 804
ApeKI	GCWGC	3 cut(s)	8, 125, 374
ApoI	RAATTY	1 cut(s)	400
Asp700I	GAANNNNTTC	2 cut(s)	495, 759
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	99, 192
AsuC2I	CCSGG	1 cut(s)	682
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	99, 192
BamHI	GGATCC	1 cut(s)	341
Bbv12I	GWGCWC	2 cut(s)	61, 209
BbvI	GCAGC	3 cut(s)	20, 137, 361
BccI	CCATC	2 cut(s)	541, 898
BceAI	ACGGC	2 cut(s)	113, 819
BcnI	CCSGG	1 cut(s)	682
BcoDI	GTCTC	3 cut(s)	174, 419, 926
BfaI	CTAG	3 cut(s)	26, 842, 854
BisI	GCNGC	3 cut(s)	9, 126, 375
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	3 cut(s)	10, 127, 376
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	2 cut(s)	99, 192
BmgT120I	GGNCC	2 cut(s)	99, 192
BmiI	GGNNCC	2 cut(s)	101, 343
BmrFI	CCNGG	1 cut(s)	682
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	2 cut(s)	12, 797
BmuI	ACTGGG	1 cut(s)	711
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	682
Bsa29I	ATCGAT	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	604
BsaHI	GRCGYC	1 cut(s)	935
BsaJI	CCNNGG	4 cut(s)	153, 354, 669, 681
BsaWI	WCCGGW	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	604
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	4 cut(s)	153, 354, 669, 681
BseGI	GGATG	2 cut(s)	391, 552
BseJI	GATNNNNATC	1 cut(s)	604
BseMII	CTCAG	4 cut(s)	26, 351, 463, 645
BseNI	ACTGG	1 cut(s)	717
BseXI	GCAGC	3 cut(s)	20, 137, 361
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	359, 767, 806
BshVI	ATCGAT	1 cut(s)	676
BsiHKAI	GWGCWC	2 cut(s)	61, 209
BsiSI	CCGG	2 cut(s)	380, 681
BslFI	GGGAC	2 cut(s)	85, 861
BsmAI	GTCTC	3 cut(s)	174, 419, 926
BsmBI	CGTCTC	1 cut(s)	926
BsmFI	GGGAC	2 cut(s)	85, 861
BsnI	GGCC	3 cut(s)	359, 767, 806
Bsp1286I	GDGCHC	2 cut(s)	61, 209
Bsp143I	GATC	8 cut(s)	301, 341, 557, 599, 673, 677, 712, 726
Bsp1720I	GCTNAGC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	354
BspANI	GGCC	3 cut(s)	359, 767, 806
BspCNI	CTCAG	4 cut(s)	25, 350, 462, 646
BspDI	ATCGAT	1 cut(s)	676
BspLI	GGNNCC	2 cut(s)	101, 343
BspPI	GGATC	9 cut(s)	296, 336, 349, 552, 607, 672, 681, 707, 721
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	4 cut(s)	153, 354, 669, 681
BssMI	GATC	8 cut(s)	301, 341, 557, 599, 673, 677, 712, 726
BssNI	GRCGYC	1 cut(s)	935
BssT1I	CCWWGG	3 cut(s)	153, 354, 669
Bst4CI	ACNGT	2 cut(s)	82, 204
Bst6I	CTCTTC	3 cut(s)	177, 548, 843
BstACI	GRCGYC	1 cut(s)	935
BstC8I	GCNNGC	4 cut(s)	45, 51, 87, 240
BstDEI	CTNAG	4 cut(s)	12, 337, 449, 654
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	391, 552
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	8 cut(s)	304, 344, 560, 602, 676, 680, 715, 729
BstMAI	GTCTC	3 cut(s)	174, 419, 926
BstMBI	GATC	8 cut(s)	301, 341, 557, 599, 673, 677, 712, 726
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 235, 305
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	20, 137, 361
BstX2I	RGATCY	5 cut(s)	301, 341, 557, 599, 712
BstYI	RGATCY	5 cut(s)	301, 341, 557, 599, 712
Bsu15I	ATCGAT	1 cut(s)	676
BsuRI	GGCC	3 cut(s)	359, 767, 806
BsuTUI	ATCGAT	1 cut(s)	676
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	391, 552
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	4 cut(s)	45, 51, 87, 240
CaiI	CAGNNNCTG	2 cut(s)	19, 232
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	99, 192
ClaI	ATCGAT	1 cut(s)	676
CseI	GACGC	1 cut(s)	943
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	4 cut(s)	296, 355, 474, 527
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	4 cut(s)	12, 337, 449, 654
DpnI	GATC	8 cut(s)	303, 343, 559, 601, 675, 679, 714, 728
DpnII	GATC	8 cut(s)	301, 341, 557, 599, 673, 677, 712, 726
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	3 cut(s)	177, 548, 843
EarI	CTCTTC	3 cut(s)	177, 548, 843
Eco130I	CCWWGG	3 cut(s)	153, 354, 669
Eco47I	GGWCC	2 cut(s)	99, 192
Eco57I	CTGAAG	3 cut(s)	54, 258, 657
EcoT14I	CCWWGG	3 cut(s)	153, 354, 669
EcoT22I	ATGCAT	1 cut(s)	790
ErhI	CCWWGG	3 cut(s)	153, 354, 669
Esp3I	CGTCTC	1 cut(s)	926
FaeI	CATG	4 cut(s)	299, 358, 477, 530
FaqI	GGGAC	2 cut(s)	85, 861
FatI	CATG	4 cut(s)	295, 354, 473, 526
Fnu4HI	GCNGC	3 cut(s)	9, 126, 375
FokI	GGATG	2 cut(s)	398, 559
Fsp4HI	GCNGC	3 cut(s)	9, 126, 375
FspBI	CTAG	3 cut(s)	26, 842, 854
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	3 cut(s)	9, 126, 375
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	359, 767, 806
HapII	CCGG	2 cut(s)	380, 681
HgaI	GACGC	1 cut(s)	943
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	935
Hin1II	CATG	4 cut(s)	299, 358, 477, 530
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	5 cut(s)	389, 447, 605, 861, 944
HpaII	CCGG	2 cut(s)	380, 681
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	316, 434
Hpy188I	TCNGA	9 cut(s)	21, 141, 277, 415, 424, 604, 637, 655, 712
Hpy188III	TCNNGA	7 cut(s)	233, 260, 339, 746, 780, 842, 948
Hpy8I	GTNNAC	2 cut(s)	316, 434
HpyAV	CCTTC	5 cut(s)	72, 176, 370, 632, 747
HpyCH4III	ACNGT	2 cut(s)	82, 204
HpyCH4IV	ACGT	2 cut(s)	198, 219
HpyCH4V	TGCA	7 cut(s)	53, 212, 287, 299, 377, 517, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 235, 305
HpyF3I	CTNAG	4 cut(s)	12, 337, 449, 654
HpySE526I	ACGT	2 cut(s)	198, 219
Hsp92I	GRCGYC	1 cut(s)	935
Hsp92II	CATG	4 cut(s)	299, 358, 477, 530
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	8 cut(s)	301, 341, 557, 599, 673, 677, 712, 726
LmnI	GCTCC	2 cut(s)	56, 235
Lsp1109I	GCAGC	3 cut(s)	20, 137, 361
LweI	GCATC	2 cut(s)	12, 797
MaeI	CTAG	3 cut(s)	26, 842, 854
MaeII	ACGT	2 cut(s)	198, 219
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	8 cut(s)	303, 343, 559, 601, 675, 679, 714, 728
MboI	GATC	8 cut(s)	301, 341, 557, 599, 673, 677, 712, 726
MboII	GAAGA	5 cut(s)	164, 264, 565, 600, 830
MflI	RGATCY	5 cut(s)	301, 341, 557, 599, 712
MhlI	GDGCHC	2 cut(s)	61, 209
MluCI	AATT	6 cut(s)	133, 346, 400, 664, 749, 796
MlyI	GAGTC	1 cut(s)	441
MmeI	TCCRAC	3 cut(s)	219, 838, 944
MnlI	CCTC	8 cut(s)	27, 104, 114, 240, 340, 376, 478, 838
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	2 cut(s)	495, 759
MseI	TTAA	3 cut(s)	663, 827, 881
MslI	CAYNNNNRTG	1 cut(s)	512
MspI	CCGG	2 cut(s)	380, 681
MspR9I	CCNGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	3 cut(s)	22, 235, 305
NciI	CCSGG	1 cut(s)	682
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	8 cut(s)	301, 341, 557, 599, 673, 677, 712, 726
NlaIII	CATG	4 cut(s)	299, 358, 477, 530
NlaIV	GGNNCC	2 cut(s)	101, 343
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	512
PdmI	GAANNNNTTC	2 cut(s)	495, 759
PfeI	GAWTC	3 cut(s)	389, 605, 861
PkrI	GCNGC	3 cut(s)	10, 127, 376
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
PsiI	TTATAA	1 cut(s)	875
Psp1406I	AACGTT	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	101, 343
PspPI	GGNCC	2 cut(s)	99, 192
PstNI	CAGNNNCTG	2 cut(s)	19, 232
PsuI	RGATCY	5 cut(s)	301, 341, 557, 599, 712
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	663, 827, 881
SatI	GCNGC	3 cut(s)	9, 126, 375
Sau3AI	GATC	8 cut(s)	301, 341, 557, 599, 673, 677, 712, 726
Sau96I	GGNCC	2 cut(s)	99, 192
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	2 cut(s)	61, 209
SfaNI	GCATC	2 cut(s)	12, 797
SinI	GGWCC	2 cut(s)	99, 192
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	6 cut(s)	133, 346, 400, 664, 749, 796
SspMI	CTAG	3 cut(s)	26, 842, 854
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	3 cut(s)	153, 354, 669
TaaI	ACNGT	2 cut(s)	82, 204
TaiI	ACGT	2 cut(s)	201, 222
TaqI	TCGA	3 cut(s)	676, 725, 745
TasI	AATT	6 cut(s)	133, 346, 400, 664, 749, 796
TfiI	GAWTC	3 cut(s)	389, 605, 861
Tru1I	TTAA	3 cut(s)	663, 827, 881
Tru9I	TTAA	3 cut(s)	663, 827, 881
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	3 cut(s)	8, 125, 374
TspDTI	ATGAA	3 cut(s)	17, 212, 828
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	2 cut(s)	99, 192
XapI	RAATTY	1 cut(s)	400
XbaI	TCTAGA	1 cut(s)	841
XceI	RCATGY	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	2 cut(s)	93, 352
XmnI	GAANNNNTTC	2 cut(s)	495, 759
XspI	CTAG	3 cut(s)	26, 842, 854
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.