AT1G63780

U3 small nucleolar ribonucleoprotein protein IMP4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002667
Physical Location & Seq
Reverse (-)
23664830 .. 23667372
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63780.1

Sequence Viewer

Length: 885 bp
ATGCAACGCAGACTCGTAAGGTTAAAAAAAGAGTATATCTACAGGAAAAGCTTGGAAGGTGATGAGCGTAAGGTCTATGAGCAGAAGCGGCTGATAAGAGAAGCCCTTCAAGAAGGAAAGCCGATTCCTACTGAGCTCCGAAACGTCGAAGCCAAGCTTCGACAAGAAATTGATCTTGAAGACCAAAACACAGCTGTTCCGCGGAGTCATATCGATGATGAATATGCAAATGCTACGGAAGCAGATCCAAAGATTTTGTTGACAACTTCTAGGAATCCAAGTGCTCCGCTCATCCGATTCACTAAGGAATTGAAGTTTGTGTTTCCTAACTCTCAGAGAATAAATCGTGGTAGTCAGGTCATTTCTGAGATCATTGAAACTGCTCGTTCCCATGATTTTACTGATGTTATATTGGTTCATGAGCACCGTGGTGTGCCTGATGGTCTCATTATCTCTCATCTCCCATTTGGACCAACTGCATACTTTGGATTACTTAATGTGGTAACAAGACATGATATTTCAGACAAGAAATCCATTGGAAAAATGCCTGAGCAATATCCTCATCTCATTTTTAACAACTTTACTACTCAGATGGGTCAAAGAGTTGGAAACATCTTAAAACATATCTTCCCTGCTCCAAAACTGGATGCAAAACGTATAGTTACTTTTTCTAATCAATCCGATTATATATCATTCAGGAATCATGTCTATGATAAAGGAGAGGGAGGTCCAAAATCAATCGAGCTTAAAGAAATCGGTCCTCGATTTGAGTTGCGGCTCTACCAGGTGAAATTAGGAACTGTGGAACAAAATGAAGCAGAGATCGAATGGGTTATAAGACCGTACATGAACACCTCTAAAAAGCGCAAGTTCATCGGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

294

Amino Acids

34.11

Weight (kDa)

9.34

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 90 - 261 3.9e-28 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
AccBSI CCGCTC 1 cut(s) 289
AccII CGCG 1 cut(s) 202
AciI CCGC 5 cut(s) 88, 200, 202, 287, 775
AclWI GGATC 1 cut(s) 239
AfaI GTAC 1 cut(s) 845
AgsI TTSAA 4 cut(s) 110, 179, 313, 377
AjnI CCWGG 1 cut(s) 783
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 5 cut(s) 51, 136, 157, 194, 745
AluI AGCT 5 cut(s) 51, 136, 157, 194, 745
Alw21I GWGCWC 3 cut(s) 138, 286, 426
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 867
AspS9I GGNCC 3 cut(s) 470, 728, 758
AsuHPI GGTGA 2 cut(s) 71, 799
AvaII GGWCC 3 cut(s) 470, 728, 758
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 3 cut(s) 138, 286, 426
BccI CCATC 2 cut(s) 434, 586
BcgI CGANNNNNNTGC 1 cut(s) 856
BciT130I CCWGG 1 cut(s) 785
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 2 cut(s) 89, 776
BlsI GCNGC 2 cut(s) 90, 777
Bme1390I CCNGG 1 cut(s) 785
Bme18I GGWCC 3 cut(s) 470, 728, 758
BmgT120I GGNCC 3 cut(s) 470, 728, 758
BmrFI CCNGG 1 cut(s) 785
BmsI GCATC 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 200, 427
Bse1I ACTGG 1 cut(s) 648
BseBI CCWGG 1 cut(s) 785
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 200, 427
BseGI GGATG 2 cut(s) 291, 652
BseMII CTCAG 5 cut(s) 123, 347, 357, 540, 602
BseNI ACTGG 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 202
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 3 cut(s) 138, 286, 426
BsmAI GTCTC 1 cut(s) 449
Bso31I GGTCTC 1 cut(s) 449
Bsp1286I GDGCHC 3 cut(s) 138, 286, 426
Bsp143I GATC 4 cut(s) 172, 244, 369, 822
BspACI CCGC 5 cut(s) 88, 200, 202, 287, 775
BspCNI CTCAG 5 cut(s) 124, 346, 358, 541, 601
BspDI ATCGAT 1 cut(s) 213
BspFNI CGCG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 418
BspPI GGATC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 289
BsrI ACTGG 1 cut(s) 648
BssECI CCNNGG 2 cut(s) 200, 427
BssMI GATC 4 cut(s) 172, 244, 369, 822
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 3 cut(s) 428, 802, 843
BstDEI CTNAG 6 cut(s) 132, 303, 333, 366, 549, 588
BstDSI CCRYGG 2 cut(s) 200, 427
BstF5I GGATG 2 cut(s) 291, 652
BstFNI CGCG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 867
BstKTI GATC 4 cut(s) 175, 247, 372, 825
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 4 cut(s) 172, 244, 369, 822
BstMWI GCNNNNNNNGC 2 cut(s) 88, 239
BstNI CCWGG 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 783
BstSFI CTRYAG 1 cut(s) 40
BstUI CGCG 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 2 cut(s) 200, 427
BtsCI GGATG 2 cut(s) 291, 652
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 867
Cfr13I GGNCC 3 cut(s) 470, 728, 758
Cfr42I CCGCGG 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 213
CsiI ACCWGGT 1 cut(s) 783
Csp6I GTAC 1 cut(s) 844
CviAII CATG 5 cut(s) 392, 419, 512, 704, 847
CviQI GTAC 1 cut(s) 844
DdeI CTNAG 6 cut(s) 132, 303, 333, 366, 549, 588
DpnI GATC 4 cut(s) 174, 246, 371, 824
DpnII GATC 4 cut(s) 172, 244, 369, 822
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 449
Eco47I GGWCC 3 cut(s) 470, 728, 758
Eco53kI GAGCTC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 783
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 5 cut(s) 395, 422, 515, 707, 850
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 5 cut(s) 391, 418, 511, 703, 846
Fnu4HI GCNGC 2 cut(s) 89, 776
FokI GGATG 2 cut(s) 278, 659
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 89, 776
FspBI CTAG 1 cut(s) 270
GlaI GCGC 1 cut(s) 866
GluI GCNGC 2 cut(s) 89, 776
HhaI GCGC 1 cut(s) 867
Hin1II CATG 5 cut(s) 395, 422, 515, 707, 850
Hin6I GCGC 1 cut(s) 865
HinP1I GCGC 1 cut(s) 865
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HindIII AAGCTT 2 cut(s) 49, 155
HinfI GANTC 6 cut(s) 12, 124, 205, 274, 297, 700
HphI GGTGA 2 cut(s) 71, 799
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 7 cut(s) 140, 296, 336, 367, 523, 591, 682
Hpy188III TCNNGA 4 cut(s) 110, 176, 419, 697
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 50, 107, 116
HpyCH4III ACNGT 3 cut(s) 428, 802, 843
HpyCH4IV ACGT 2 cut(s) 144, 655
HpyCH4V TGCA 4 cut(s) 4, 227, 479, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 239
HpyF3I CTNAG 6 cut(s) 132, 303, 333, 366, 549, 588
HpySE526I ACGT 2 cut(s) 144, 655
Hsp92II CATG 5 cut(s) 395, 422, 515, 707, 850
HspAI GCGC 1 cut(s) 865
KspI CCGCGG 1 cut(s) 203
Kzo9I GATC 4 cut(s) 172, 244, 369, 822
LmnI GCTCC 3 cut(s) 141, 289, 640
LpnPI CCDG 9 cut(s) 28, 341, 450, 561, 629, 645, 682, 770, 797
LweI GCATC 1 cut(s) 637
MabI ACCWGGT 1 cut(s) 783
MaeI CTAG 1 cut(s) 270
MaeII ACGT 2 cut(s) 144, 655
MaeIII GTNAC 2 cut(s) 502, 661
MalI GATC 4 cut(s) 174, 246, 371, 824
MbiI CCGCTC 1 cut(s) 289
MboI GATC 4 cut(s) 172, 244, 369, 822
MboII GAAGA 2 cut(s) 191, 619
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 3 cut(s) 138, 286, 426
MluCI AATT 3 cut(s) 168, 308, 791
MlyI GAGTC 2 cut(s) 6, 214
MmeI TCCRAC 1 cut(s) 586
MnlI CCTC 5 cut(s) 570, 715, 719, 771, 865
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 5 cut(s) 23, 495, 573, 617, 747
MslI CAYNNNNRTG 3 cut(s) 213, 429, 708
MspA1I CMGCKG 2 cut(s) 194, 202
MspR9I CCNGG 1 cut(s) 785
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 88, 239
NdeII GATC 4 cut(s) 172, 244, 369, 822
NlaIII CATG 5 cut(s) 395, 422, 515, 707, 850
OliI CACNNNNGTG 1 cut(s) 429
PagI TCATGA 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 4 cut(s) 124, 274, 297, 700
PkrI GCNGC 2 cut(s) 90, 777
PleI GAGTC 2 cut(s) 6, 213
PpsI GAGTC 2 cut(s) 6, 213
PsiI TTATAA 1 cut(s) 836
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 783
PspGI CCWGG 1 cut(s) 783
PspPI GGNCC 3 cut(s) 470, 728, 758
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
RseI CAYNNNNRTG 3 cut(s) 213, 429, 708
SacI GAGCTC 1 cut(s) 138
SacII CCGCGG 1 cut(s) 203
SaqAI TTAA 5 cut(s) 23, 495, 573, 617, 747
SatI GCNGC 2 cut(s) 89, 776
Sau3AI GATC 4 cut(s) 172, 244, 369, 822
Sau96I GGNCC 3 cut(s) 470, 728, 758
SchI GAGTC 2 cut(s) 6, 214
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 3 cut(s) 138, 286, 426
SexAI ACCWGGT 1 cut(s) 783
SfaNI GCATC 1 cut(s) 637
SfcI CTRYAG 1 cut(s) 40
Sfr303I CCGCGG 1 cut(s) 203
SgrBI CCGCGG 1 cut(s) 203
SinI GGWCC 3 cut(s) 470, 728, 758
SmiMI CAYNNNNRTG 3 cut(s) 213, 429, 708
Sse9I AATT 3 cut(s) 168, 308, 791
SsiI CCGC 5 cut(s) 88, 200, 202, 287, 775
SspMI CTAG 1 cut(s) 270
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 783
TaaI ACNGT 3 cut(s) 428, 802, 843
TaiI ACGT 2 cut(s) 147, 658
TaqI TCGA 6 cut(s) 147, 160, 213, 741, 763, 825
TaqII GACCGA 1 cut(s) 746
TasI AATT 3 cut(s) 168, 308, 791
TauI GCSGC 2 cut(s) 91, 778
TfiI GAWTC 4 cut(s) 124, 274, 297, 700
Tru1I TTAA 5 cut(s) 23, 495, 573, 617, 747
Tru9I TTAA 5 cut(s) 23, 495, 573, 617, 747
TspDTI ATGAA 5 cut(s) 234, 407, 828, 862, 863
TspGWI ACGGA 1 cut(s) 251
VpaK11BI GGWCC 3 cut(s) 470, 728, 758
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.