Rh1BG039800

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002667
Physical Location & Seq
Reverse (-)
5219999 .. 5224812
4814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG039800.1

Sequence Viewer

Length: 834 bp
ATGTTGAGGAGAAATACGAGGTTAGAGAAGGAGTACTTGTTCAGGAAGAGTAAAGAAACCCTAGAACGCACGCAGTACGAGAAGAAGCGCAAGATAAGGCAAGCCCTACAAGAGGGAAAACCAATTCCTACTGAGCTTCGAAATGAAGAGGCCAAGCTTCGTCAAGAAATCGATCTCGAAGATGAAAACACTGCTGTCCCAAGGACACATATCGATGATGAGTATGCCAAAGCATCAGAAAGAGATCCCAAAATTTTGCTAACTACTTCCCGGGATCCGAGTGCTCCACTAATACAATTCACAAAGGAACTGAAACTTATTTTTCCTAATGCACAAGTAGTAAATCGTGGTGGTCAGGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGCTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATTATTAACAATTTCACGACTAAGTTGGGTGAGCGGACAGCAAATATTTTAAAGCATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCGGTTTGAGTTGAAGCTTTTCAAGGTTAGTGCTTTTACATTCATCAGTTTACATTCACATGATGTATGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

277

Amino Acids

32.1

Weight (kDa)

9.09

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 90 - 261 1.7e-27 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 601
AccII CGCG 1 cut(s) 760
AciI CCGC 3 cut(s) 601, 758, 760
AclWI GGATC 3 cut(s) 239, 269, 282
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 764
AfaI GTAC 2 cut(s) 35, 77
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 5 cut(s) 377, 488, 507, 772, 781
AjnI CCWGG 1 cut(s) 718
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 5 cut(s) 136, 157, 479, 742, 775
AluI AGCT 5 cut(s) 136, 157, 479, 742, 775
Alw21I GWGCWC 2 cut(s) 286, 391
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 3 cut(s) 239, 269, 282
AlwNI CAGNNNCTG 1 cut(s) 407
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 387
ApoI RAATTY 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 3 cut(s) 470, 725, 755
AsuC2I CCSGG 2 cut(s) 271, 272
AsuHPI GGTGA 1 cut(s) 608
AsuII TTCGAA 2 cut(s) 139, 671
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 3 cut(s) 470, 725, 755
BaeGI GKGCMC 1 cut(s) 391
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 544
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
Bbv12I GWGCWC 2 cut(s) 286, 391
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 1 cut(s) 720
BcnI CCSGG 2 cut(s) 271, 272
BfaI CTAG 1 cut(s) 62
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 3 cut(s) 271, 272, 720
Bme18I GGWCC 3 cut(s) 470, 725, 755
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 3 cut(s) 470, 725, 755
BmiI GGNNCC 2 cut(s) 276, 546
BmrFI CCNGG 3 cut(s) 271, 272, 720
BmsI GCATC 4 cut(s) 242, 394, 631, 709
BpmI CTGGAG 1 cut(s) 741
Bpu14I TTCGAA 2 cut(s) 139, 671
BpuMI CCSGG 2 cut(s) 271, 272
Bsa29I ATCGAT 2 cut(s) 171, 213
BsaJI CCNNGG 4 cut(s) 200, 270, 534, 758
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 720
BseCI ATCGAT 2 cut(s) 171, 213
BseDI CCNNGG 4 cut(s) 200, 270, 534, 758
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 760
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 544
BshVI ATCGAT 2 cut(s) 171, 213
BsiHKAI GWGCWC 2 cut(s) 286, 391
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 270
Bsp119I TTCGAA 2 cut(s) 139, 671
Bsp1286I GDGCHC 2 cut(s) 286, 391
Bsp143I GATC 3 cut(s) 172, 244, 274
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 3 cut(s) 601, 758, 760
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 124
BspDI ATCGAT 2 cut(s) 171, 213
BspFNI CGCG 1 cut(s) 760
BspLI GGNNCC 2 cut(s) 276, 546
BspPI GGATC 3 cut(s) 239, 269, 282
BspT104I TTCGAA 2 cut(s) 139, 671
BspT107I GGYRCC 1 cut(s) 544
BsrBI CCGCTC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 200, 270, 534, 758
BssMI GATC 3 cut(s) 172, 244, 274
BssT1I CCWWGG 2 cut(s) 200, 534
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 2 cut(s) 41, 141
BstBI TTCGAA 2 cut(s) 139, 671
BstC8I GCNNGC 2 cut(s) 71, 102
BstDEI CTNAG 2 cut(s) 132, 588
BstDSI CCRYGG 2 cut(s) 534, 758
BstENI CCTNNNNNAGG 1 cut(s) 110
BstFNI CGCG 1 cut(s) 760
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 3 cut(s) 175, 247, 277
BstMBI GATC 3 cut(s) 172, 244, 274
BstNI CCWGG 1 cut(s) 720
BstSCI CCNGG 3 cut(s) 269, 270, 718
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 1 cut(s) 760
BstX2I RGATCY 2 cut(s) 244, 274
BstYI RGATCY 2 cut(s) 244, 274
Bsu15I ATCGAT 2 cut(s) 171, 213
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 2 cut(s) 171, 213
BtgI CCRYGG 2 cut(s) 534, 758
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 639
Cac8I GCNNGC 2 cut(s) 71, 102
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 3 cut(s) 470, 725, 755
Cfr42I CCGCGG 1 cut(s) 761
Cfr9I CCCGGG 1 cut(s) 270
ClaI ATCGAT 2 cut(s) 171, 213
Csp6I GTAC 2 cut(s) 34, 76
CviAII CATG 5 cut(s) 392, 419, 512, 535, 818
CviQI GTAC 2 cut(s) 34, 76
DdeI CTNAG 2 cut(s) 132, 588
DpnI GATC 3 cut(s) 174, 246, 276
DpnII GATC 3 cut(s) 172, 244, 274
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 41, 141
EarI CTCTTC 2 cut(s) 41, 141
Eco130I CCWWGG 2 cut(s) 200, 534
Eco47I GGWCC 3 cut(s) 470, 725, 755
Eco57I CTGAAG 1 cut(s) 764
Eco88I CYCGRG 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 718
EcoT14I CCWWGG 2 cut(s) 200, 534
ErhI CCWWGG 2 cut(s) 200, 534
FaeI CATG 5 cut(s) 395, 422, 515, 538, 821
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 182
FatI CATG 5 cut(s) 391, 418, 511, 534, 817
FauNDI CATATG 1 cut(s) 466
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 271
HhaI GCGC 1 cut(s) 90
Hin1II CATG 5 cut(s) 395, 422, 515, 538, 821
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 2 cut(s) 155, 773
HpaII CCGG 1 cut(s) 271
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 3 cut(s) 389, 434, 809
Hpy188I TCNGA 3 cut(s) 238, 279, 367
Hpy188III TCNNGA 5 cut(s) 43, 164, 176, 507, 583
Hpy8I GTNNAC 3 cut(s) 389, 434, 809
HpyAV CCTTC 3 cut(s) 22, 470, 739
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4V TGCA 4 cut(s) 332, 389, 418, 495
HpyF3I CTNAG 2 cut(s) 132, 588
Hsp92II CATG 5 cut(s) 395, 422, 515, 538, 821
HspAI GCGC 1 cut(s) 88
KspI CCGCGG 1 cut(s) 761
Kzo9I GATC 3 cut(s) 172, 244, 274
LmnI GCTCC 1 cut(s) 289
LweI GCATC 4 cut(s) 242, 394, 631, 709
MaeI CTAG 1 cut(s) 62
MalI GATC 3 cut(s) 174, 246, 276
MbiI CCGCTC 1 cut(s) 601
MboI GATC 3 cut(s) 172, 244, 274
MboII GAAGA 4 cut(s) 58, 94, 158, 191
MflI RGATCY 2 cut(s) 244, 274
MhlI GDGCHC 2 cut(s) 286, 391
MluCI AATT 5 cut(s) 123, 252, 296, 369, 577
MnlI CCTC 4 cut(s) 12, 106, 142, 716
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 2 cut(s) 573, 617
MslI CAYNNNNRTG 3 cut(s) 213, 708, 816
MspA1I CMGCKG 1 cut(s) 760
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 3 cut(s) 271, 272, 720
MvaI CCWGG 1 cut(s) 720
MvnI CGCG 1 cut(s) 760
NciI CCSGG 2 cut(s) 271, 272
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 466
NdeII GATC 3 cut(s) 172, 244, 274
NlaIII CATG 5 cut(s) 395, 422, 515, 538, 821
NlaIV GGNNCC 2 cut(s) 276, 546
NspV TTCGAA 2 cut(s) 139, 671
PdmI GAANNNNTTC 1 cut(s) 776
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 2 cut(s) 276, 546
PspPI GGNCC 3 cut(s) 470, 725, 755
PspPPI RGGWCCY 1 cut(s) 725
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 2 cut(s) 244, 274
RsaI GTAC 2 cut(s) 35, 77
RsaNI GTAC 2 cut(s) 34, 76
RseI CAYNNNNRTG 3 cut(s) 213, 708, 816
SacII CCGCGG 1 cut(s) 761
SaqAI TTAA 2 cut(s) 573, 617
Sau3AI GATC 3 cut(s) 172, 244, 274
Sau96I GGNCC 3 cut(s) 470, 725, 755
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 271, 272, 720
SduI GDGCHC 2 cut(s) 286, 391
SfaNI GCATC 4 cut(s) 242, 394, 631, 709
Sfr303I CCGCGG 1 cut(s) 761
SfuI TTCGAA 2 cut(s) 139, 671
SgrBI CCGCGG 1 cut(s) 761
SinI GGWCC 3 cut(s) 470, 725, 755
SmaI CCCGGG 1 cut(s) 272
SmiMI CAYNNNNRTG 3 cut(s) 213, 708, 816
Sse9I AATT 5 cut(s) 123, 252, 296, 369, 577
SsiI CCGC 3 cut(s) 601, 758, 760
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 269, 270, 718
StyI CCWWGG 2 cut(s) 200, 534
TaaI ACNGT 1 cut(s) 544
TaqI TCGA 5 cut(s) 139, 171, 177, 213, 671
TasI AATT 5 cut(s) 123, 252, 296, 369, 577
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 2 cut(s) 573, 617
Tru9I TTAA 2 cut(s) 573, 617
TscAI CASTG 2 cut(s) 196, 639
TspDTI ATGAA 5 cut(s) 159, 198, 435, 681, 790
TspMI CCCGGG 1 cut(s) 270
TspRI CASTG 2 cut(s) 196, 639
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 3 cut(s) 470, 725, 755
XagI CCTNNNNNAGG 1 cut(s) 110
XapI RAATTY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmaI CCCGGG 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.