Rh1AG043100

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002667
Physical Location & Seq
Reverse (-)
7445925 .. 7450849
4925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG043100.1

Sequence Viewer

Length: 723 bp
ATGTTGAGGAGAAATACGAGGTTAGAGAAGGAGTACTTGTTCAGGAAGAGTAAAGAAACCCTAGAACGCACGCAGCACGAGAAGAAGCGCAAAATAAGACAAGCACTACAAGAGGGAAAGCCAATTCCTACTGAGCTTCGAAATGAAGAGGCCAAGCTTCGTCAAGAAATCGATCTCGAAGATGAAAACACTGCTGTCCCAAGGACACATATCGATGATGAGTATGCCAAAGCATCAGAAAGAGATCCCAAAATTTTGCTAACTACTTCCCGGGATCCGAGTGCTCCACTAATACAATTCACAAAGGAACTGAAACTTATTTTTCCTAATGCACAAGTAGTAAATCGTGGTGGTCAGGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATTATTAACAATTTCACGACTAAGTTGGGTGAGCGGACAGCAAATATTTTAAAGCATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGTTTGTTGTCTCATTCACTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

240

Amino Acids

27.86

Weight (kDa)

9.14

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 90 - 233 2.2e-19 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 601
AciI CCGC 1 cut(s) 601
AclWI GGATC 3 cut(s) 239, 269, 282
AcsI RAATTY 1 cut(s) 252
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 3 cut(s) 377, 488, 507
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 3 cut(s) 136, 157, 479
AluI AGCT 3 cut(s) 136, 157, 479
Alw21I GWGCWC 2 cut(s) 286, 391
Alw26I GTCTC 1 cut(s) 712
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 3 cut(s) 239, 269, 282
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 252
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 470
AsuC2I CCSGG 2 cut(s) 271, 272
AsuHPI GGTGA 1 cut(s) 608
AsuII TTCGAA 2 cut(s) 139, 671
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 1 cut(s) 470
BaeGI GKGCMC 1 cut(s) 391
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 544
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 2 cut(s) 286, 391
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BcnI CCSGG 2 cut(s) 271, 272
BcoDI GTCTC 1 cut(s) 712
BfaI CTAG 1 cut(s) 62
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 271, 272
Bme18I GGWCC 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 2 cut(s) 276, 546
BmrFI CCNGG 2 cut(s) 271, 272
BmsI GCATC 2 cut(s) 242, 631
Bpu14I TTCGAA 2 cut(s) 139, 671
BpuMI CCSGG 2 cut(s) 271, 272
Bsa29I ATCGAT 2 cut(s) 171, 213
BsaJI CCNNGG 3 cut(s) 200, 270, 534
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 502
BseCI ATCGAT 2 cut(s) 171, 213
BseDI CCNNGG 3 cut(s) 200, 270, 534
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 544
BshVI ATCGAT 2 cut(s) 171, 213
BsiHKAI GWGCWC 2 cut(s) 286, 391
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 712
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 270
Bsp119I TTCGAA 2 cut(s) 139, 671
Bsp1286I GDGCHC 2 cut(s) 286, 391
Bsp143I GATC 3 cut(s) 172, 244, 274
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 1 cut(s) 601
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 124
BspDI ATCGAT 2 cut(s) 171, 213
BspLI GGNNCC 2 cut(s) 276, 546
BspPI GGATC 3 cut(s) 239, 269, 282
BspT104I TTCGAA 2 cut(s) 139, 671
BspT107I GGYRCC 1 cut(s) 544
BsrBI CCGCTC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 3 cut(s) 200, 270, 534
BssMI GATC 3 cut(s) 172, 244, 274
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 2 cut(s) 200, 534
Bst2BI CACGAG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 2 cut(s) 41, 141
BstBI TTCGAA 2 cut(s) 139, 671
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 132, 588
BstDSI CCRYGG 1 cut(s) 534
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 3 cut(s) 175, 247, 277
BstMAI GTCTC 1 cut(s) 712
BstMBI GATC 3 cut(s) 172, 244, 274
BstSCI CCNGG 2 cut(s) 269, 270
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 2 cut(s) 244, 274
BstYI RGATCY 2 cut(s) 244, 274
Bsu15I ATCGAT 2 cut(s) 171, 213
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 2 cut(s) 171, 213
BtgI CCRYGG 1 cut(s) 534
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 639
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 470
Cfr9I CCCGGG 1 cut(s) 270
ClaI ATCGAT 2 cut(s) 171, 213
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 392, 419, 512, 535
CviJI RGCY 8 cut(s) 121, 136, 152, 157, 479, 533, 554, 643
CviKI_1 RGCY 8 cut(s) 121, 136, 152, 157, 479, 533, 554, 643
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 132, 588
DpnI GATC 3 cut(s) 174, 246, 276
DpnII GATC 3 cut(s) 172, 244, 274
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 41, 141
EarI CTCTTC 2 cut(s) 41, 141
Eco130I CCWWGG 2 cut(s) 200, 534
Eco47I GGWCC 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 200, 534
ErhI CCWWGG 2 cut(s) 200, 534
FaeI CATG 4 cut(s) 395, 422, 515, 538
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 182
FatI CATG 4 cut(s) 391, 418, 511, 534
FauNDI CATATG 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 271
HhaI GCGC 1 cut(s) 90
Hin1II CATG 4 cut(s) 395, 422, 515, 538
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 155
HpaII CCGG 1 cut(s) 271
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 2 cut(s) 389, 434
Hpy188I TCNGA 3 cut(s) 238, 279, 367
Hpy188III TCNNGA 5 cut(s) 43, 164, 176, 507, 583
Hpy8I GTNNAC 2 cut(s) 389, 434
HpyAV CCTTC 2 cut(s) 22, 470
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4V TGCA 4 cut(s) 332, 389, 418, 495
HpyF3I CTNAG 2 cut(s) 132, 588
Hsp92II CATG 4 cut(s) 395, 422, 515, 538
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 3 cut(s) 172, 244, 274
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 9 cut(s) 28, 284, 341, 450, 536, 645, 657, 665, 682
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 242, 631
MaeI CTAG 1 cut(s) 62
MalI GATC 3 cut(s) 174, 246, 276
MbiI CCGCTC 1 cut(s) 601
MboI GATC 3 cut(s) 172, 244, 274
MboII GAAGA 4 cut(s) 58, 94, 158, 191
MflI RGATCY 2 cut(s) 244, 274
MhlI GDGCHC 2 cut(s) 286, 391
MluCI AATT 5 cut(s) 123, 252, 296, 369, 577
MnlI CCTC 3 cut(s) 12, 106, 142
MseI TTAA 2 cut(s) 573, 617
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 2 cut(s) 271, 272
NciI CCSGG 2 cut(s) 271, 272
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 466
NdeII GATC 3 cut(s) 172, 244, 274
NlaIII CATG 4 cut(s) 395, 422, 515, 538
NlaIV GGNNCC 2 cut(s) 276, 546
NspV TTCGAA 2 cut(s) 139, 671
PkrI GCNGC 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 276, 546
PspPI GGNCC 1 cut(s) 470
PsuI RGATCY 2 cut(s) 244, 274
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 2 cut(s) 573, 617
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 3 cut(s) 172, 244, 274
Sau96I GGNCC 1 cut(s) 470
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 271, 272
SduI GDGCHC 2 cut(s) 286, 391
SetI ASST 8 cut(s) 23, 138, 159, 360, 439, 462, 481, 701
SfaNI GCATC 2 cut(s) 242, 631
SfuI TTCGAA 2 cut(s) 139, 671
SinI GGWCC 1 cut(s) 470
SmaI CCCGGG 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 5 cut(s) 123, 252, 296, 369, 577
SsiI CCGC 1 cut(s) 601
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 269, 270
StyI CCWWGG 2 cut(s) 200, 534
TaaI ACNGT 1 cut(s) 544
TaqI TCGA 5 cut(s) 139, 171, 177, 213, 671
TasI AATT 5 cut(s) 123, 252, 296, 369, 577
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 2 cut(s) 573, 617
Tru9I TTAA 2 cut(s) 573, 617
TscAI CASTG 2 cut(s) 196, 639
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 4 cut(s) 159, 198, 435, 681
TspMI CCCGGG 1 cut(s) 270
TspRI CASTG 2 cut(s) 196, 639
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmaI CCCGGG 1 cut(s) 270
XspI CTAG 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.