Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002667

Physical Location & Seq

Genomic Coordinates Forward (+)

5255628 .. 5256633

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0031000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTCTGGCAGTAGTGGGTGGAGCTTTTCTCTCTTCGTTTCTCAATGTTTTGTTCGATCAGATGGCTTCCCATCAGTTCGTCGATTTCTTCCGCCGGGAAAAGCGCACCGAGATGCTCGACGATGCTGAGGAGAAGCAAATTAGAAACCCTGCAGTGAAGAAGTGGCTTGACGAGCTTAAAGATGCTATCTATGCTGTGGGGGATGTGCTGGATGAAGTCAACATCGAAGCTCTGCGGCTCAAACTAGAAGGTGAAGCGGGAAAGAAAAACTTCAGTTGGTGGGAGCTTGTCAATTCCAATTCAATCGATAAATTCGACAAAAGTTTTGAACCCAAGATAGAAGACATTCTCCATAGGTTAGAACTTGTTGCATACAAGAAAGAAGCACTTGATTTGAAAGAAGGTGTTGTTGCAAGACCACAAGATGTGAGTGGCAGTAAGGTAAATGTTATTCCTATTGCTGCCCCGGCTTCCAACTTTGACATCCAAGCATGGGTTTGTGTTTCAGAAGAATTTGACATGGTTAGAATATCCCAAACAATTCATCAGACTTGTGGTGTTATAGATTTGAATTTACTTCAAGTTCAATTGAAGAATGCTTTGGCGGGGAAAATTTTTCTCATTGTTCTTAATGATGTTTGGAACGAGGATTATGCTCTGTGGGATGTCTTGAGGGGGCCATTCCAGTCTGGAGCACAAGGAAGTAAGATCATGATCACAACACGCAATCAAGGTGTTACATCTGTGATGGGTACTCGTTCTGAACATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Brix

Protein Analysis

258

Amino Acids

29.08

Weight (kDa)

5.06

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	38 - 87	4.6e-13	Rx N-terminal domain
NB-ARC	PF00931	159 - 256	1.8e-16	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63780
fragaria_vesca	FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470
malus_domestica	MD05G1030400.v1.1 MD10G1031800.v1.1
prunus_persica	Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.8G084800_v2.0.a1 Prupe.8G084800_v2.0.a1
pyrus_communis	pycom05g02160 pycom10g02010
rosa_chinensis	RchiOBHm_Chr1g0319831 RchiOBHm_Chr1g0320641 RchiOBHm_Chr1g0320961 RchiOBHm_Chr1g0321121
rosa_laevigata	RLG00000030450
rosa_multiflora	Rmu_sc0004627.1_g000009 Rmu_sc0004660.1_g000006 Rmu_sc0007977.1_g000009 Rmu_sc0008752.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433730 Rroxscaffold_4G00328080
rosa_rugosa	Rorug01G0031000 Rorug01G0031100
rosa_samantha	Rh1AG043100 Rh1BG039800 Rh1CG043200 Rh1CG045200 Rh1DG022700 Rh1DG024200 Rh1DG025900 Rh1DG049600 Rh1DG049800
rosa_wichuraiana	Rw0G001080 Rw1G003660 Rw1G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	94, 238, 260, 608
AcsI	RAATTY	4 cut(s)	314, 515, 574, 615
AcuI	CTGAAG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	757
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	7 cut(s)	306, 332, 400, 574, 584, 590, 595
AjuI	GAANNNNNNNTTGG	2 cut(s)	587, 619
AluBI	AGCT	4 cut(s)	26, 178, 233, 289
AluI	AGCT	4 cut(s)	26, 178, 233, 289
Alw21I	GWGCWC	1 cut(s)	700
AoxI	GGCC	1 cut(s)	680
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	4 cut(s)	314, 515, 574, 615
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	2 cut(s)	272, 348
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	680
AsuC2I	CCSGG	2 cut(s)	98, 470
AsuHPI	GGTGA	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	700
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	3 cut(s)	58, 81, 745
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	2 cut(s)	98, 470
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	153
BisI	GCNGC	2 cut(s)	239, 465
BlsI	GCNGC	2 cut(s)	240, 466
Bme1390I	CCNGG	2 cut(s)	98, 470
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	2 cut(s)	98, 470
BmsI	GCATC	3 cut(s)	105, 115, 175
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	694
BpuMI	CCSGG	2 cut(s)	98, 470
Bsa29I	ATCGAT	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	716
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	1 cut(s)	688
Bse8I	GATNNNNATC	1 cut(s)	716
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	4 cut(s)	211, 220, 486, 673
BseJI	GATNNNNATC	1 cut(s)	716
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	451
BshFI	GGCC	1 cut(s)	682
BshVI	ATCGAT	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	97, 470
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	1 cut(s)	682
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	58, 711, 717
BspACI	CCGC	4 cut(s)	94, 238, 260, 608
BspANI	GGCC	1 cut(s)	682
BspCNI	CTCAG	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	681
BspMAI	CTGCAG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	3 cut(s)	58, 711, 717
Bst6I	CTCTTC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	211, 220, 486, 673
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	3 cut(s)	61, 714, 720
BstMBI	GATC	3 cut(s)	58, 711, 717
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 194, 470
BstSCI	CCNGG	2 cut(s)	96, 468
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	682
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	211, 220, 486, 673
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
CciI	TCATGA	1 cut(s)	714
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	680
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	756
CviAII	CATG	3 cut(s)	495, 523, 715
CviQI	GTAC	1 cut(s)	756
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	3 cut(s)	60, 713, 719
DpnII	GATC	3 cut(s)	58, 711, 717
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	259
FaeI	CATG	3 cut(s)	498, 526, 718
FaiI	YATR	8 cut(s)	195, 357, 376, 496, 524, 566, 657, 716
FalI	AAGNNNNNCTT	4 cut(s)	257, 289, 375, 407
FatI	CATG	3 cut(s)	494, 522, 714
FauI	CCCGC	2 cut(s)	253, 601
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	2 cut(s)	239, 465
FokI	GGATG	4 cut(s)	218, 227, 473, 680
Fsp4HI	GCNGC	2 cut(s)	239, 465
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	2 cut(s)	239, 465
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	1 cut(s)	682
HapII	CCGG	2 cut(s)	97, 470
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	498, 526, 718
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HpaII	CCGG	2 cut(s)	97, 470
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	63, 511, 552, 766
Hpy188III	TCNNGA	3 cut(s)	673, 693, 715
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	86, 125
HpyAV	CCTTC	2 cut(s)	245, 398
HpyCH4V	TGCA	3 cut(s)	155, 374, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 194, 470
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	498, 526, 718
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	58, 711, 717
LmnI	GCTCC	3 cut(s)	23, 286, 695
LpnPI	CCDG	6 cut(s)	110, 165, 197, 483, 678, 701
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	3 cut(s)	105, 115, 175
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	3 cut(s)	60, 713, 719
MboI	GATC	3 cut(s)	58, 711, 717
MboII	GAAGA	6 cut(s)	27, 82, 172, 356, 524, 607
MfeI	CAATTG	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	9 cut(s)	141, 295, 301, 314, 515, 543, 574, 590, 615
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	3 cut(s)	124, 643, 669
MroXI	GAANNNNTTC	2 cut(s)	272, 348
MseI	TTAA	2 cut(s)	180, 633
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	2 cut(s)	97, 470
MspR9I	CCNGG	2 cut(s)	98, 470
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	604
MwoI	GCNNNNNNNGC	3 cut(s)	175, 194, 470
NciI	CCSGG	2 cut(s)	98, 470
NdeII	GATC	3 cut(s)	58, 711, 717
NlaIII	CATG	3 cut(s)	498, 526, 718
NlaIV	GGNNCC	1 cut(s)	681
PagI	TCATGA	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	1 cut(s)	604
PdmI	GAANNNNTTC	2 cut(s)	272, 348
PkrI	GCNGC	2 cut(s)	240, 466
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	1 cut(s)	680
PstI	CTGCAG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	757
RsaNI	GTAC	1 cut(s)	756
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	180, 633
SatI	GCNGC	2 cut(s)	239, 465
Sau3AI	GATC	3 cut(s)	58, 711, 717
Sau96I	GGNCC	1 cut(s)	680
ScrFI	CCNGG	2 cut(s)	98, 470
SduI	GDGCHC	1 cut(s)	700
SetI	ASST	9 cut(s)	28, 180, 235, 256, 291, 362, 409, 447, 739
SfaNI	GCATC	3 cut(s)	105, 115, 175
SfcI	CTRYAG	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	673
SmoI	CTYRAG	1 cut(s)	673
Sse9I	AATT	9 cut(s)	141, 295, 301, 314, 515, 543, 574, 590, 615
SsiI	CCGC	4 cut(s)	94, 238, 260, 608
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	96, 468
TaqI	TCGA	6 cut(s)	57, 84, 120, 228, 309, 318
TasI	AATT	9 cut(s)	141, 295, 301, 314, 515, 543, 574, 590, 615
TauI	GCSGC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	180, 633
Tru9I	TTAA	2 cut(s)	180, 633
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	231, 536
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	4 cut(s)	314, 515, 574, 615
XmnI	GAANNNNTTC	2 cut(s)	272, 348
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.