Rh1CG043200

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002667
Physical Location & Seq
Reverse (-)
8040366 .. 8043281
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG043200.1

Sequence Viewer

Length: 531 bp
ATGCAGGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACATAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATAATTAACAATTTCACGACTAAGTTGGGTGAGCGGACTGCAAATATTTTAAAACATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCGGTTTGAGTTGAAGCTTTTCAAGATAAAATTAGGAACAGTGGATCAGAATGAAGCCCAGAATGAATGGGTCCTCAAACCGTACATGAACACAGCCAAGAAACAGAAATTTATAGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

176

Amino Acids

20.25

Weight (kDa)

9.17

Isoelectric Point (pI)

27.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 16 - 144 2.7e-24 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 250
AccII CGCG 1 cut(s) 409
AciI CCGC 3 cut(s) 250, 407, 409
AclWI GGATC 1 cut(s) 459
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 1 cut(s) 491
AgsI TTSAA 5 cut(s) 26, 137, 156, 421, 430
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 3 cut(s) 128, 391, 424
AluI AGCT 3 cut(s) 128, 391, 424
Alw21I GWGCWC 1 cut(s) 40
Alw44I GTGCAC 1 cut(s) 36
AlwI GGATC 1 cut(s) 459
ApaLI GTGCAC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 425
AspS9I GGNCC 4 cut(s) 119, 374, 404, 478
AsuHPI GGTGA 1 cut(s) 257
AsuII TTCGAA 1 cut(s) 320
AvaII GGWCC 4 cut(s) 119, 374, 404, 478
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 193
BarI GAAGNNNNNNTAC 2 cut(s) 93, 125
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 18
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 4 cut(s) 119, 374, 404, 478
BmgT120I GGNCC 4 cut(s) 119, 374, 404, 478
BmiI GGNNCC 2 cut(s) 195, 479
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 358
BpmI CTGGAG 1 cut(s) 390
Bpu14I TTCGAA 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 183, 407
Bse1I ACTGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 183, 407
BseMI GCAATG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 409
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 40
Bsp119I TTCGAA 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 451
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 3 cut(s) 250, 407, 409
BspFNI CGCG 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 195, 479
BspPI GGATC 1 cut(s) 459
BspT104I TTCGAA 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 183, 407
BssMI GATC 1 cut(s) 451
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 3 cut(s) 193, 448, 489
BstBI TTCGAA 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 2 cut(s) 183, 407
BstFNI CGCG 1 cut(s) 409
BstKTI GATC 1 cut(s) 454
BstMBI GATC 1 cut(s) 451
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 1 cut(s) 409
BtgI CCRYGG 2 cut(s) 183, 407
BtsIMutI CAGTG 2 cut(s) 288, 453
Cfr13I GGNCC 4 cut(s) 119, 374, 404, 478
Cfr42I CCGCGG 1 cut(s) 410
Csp6I GTAC 1 cut(s) 490
CviAII CATG 5 cut(s) 41, 68, 161, 184, 493
CviJI RGCY 9 cut(s) 128, 182, 203, 292, 367, 391, 424, 464, 503
CviKI_1 RGCY 9 cut(s) 128, 182, 203, 292, 367, 391, 424, 464, 503
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
DraI TTTAAA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 4 cut(s) 119, 374, 404, 478
Eco57I CTGAAG 1 cut(s) 413
EcoO109I RGGNCCY 2 cut(s) 374, 478
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 5 cut(s) 44, 71, 164, 187, 496
FatI CATG 5 cut(s) 40, 67, 160, 183, 492
FauNDI CATATG 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 390
Hin1II CATG 5 cut(s) 44, 71, 164, 187, 496
HindIII AAGCTT 1 cut(s) 422
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 38, 83
Hpy188I TCNGA 2 cut(s) 16, 456
Hpy188III TCNNGA 3 cut(s) 156, 232, 430
Hpy8I GTNNAC 2 cut(s) 38, 83
HpyAV CCTTC 2 cut(s) 119, 388
HpyCH4III ACNGT 3 cut(s) 193, 448, 489
HpyCH4V TGCA 5 cut(s) 4, 38, 67, 144, 257
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 5 cut(s) 44, 71, 164, 187, 496
KspI CCGCGG 1 cut(s) 410
Kzo9I GATC 1 cut(s) 451
LpnPI CCDG 9 cut(s) 99, 185, 294, 306, 314, 331, 354, 381, 479
LweI GCATC 1 cut(s) 358
MalI GATC 1 cut(s) 453
MbiI CCGCTC 1 cut(s) 250
MboI GATC 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 6 cut(s) 18, 219, 226, 437, 515, 526
MnlI CCTC 2 cut(s) 365, 491
MroXI GAANNNNTTC 1 cut(s) 425
MseI TTAA 2 cut(s) 222, 266
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 1 cut(s) 409
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 451
NlaIII CATG 5 cut(s) 44, 71, 164, 187, 496
NlaIV GGNNCC 2 cut(s) 195, 479
NspV TTCGAA 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 425
PpuMI RGGWCCY 2 cut(s) 374, 478
Psp5II RGGWCCY 2 cut(s) 374, 478
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 2 cut(s) 195, 479
PspPI GGNCC 4 cut(s) 119, 374, 404, 478
PspPPI RGGWCCY 2 cut(s) 374, 478
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 357
SacII CCGCGG 1 cut(s) 410
SaqAI TTAA 2 cut(s) 222, 266
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 4 cut(s) 119, 374, 404, 478
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 40
SetI ASST 7 cut(s) 9, 88, 111, 130, 376, 393, 426
SfaNI GCATC 1 cut(s) 358
Sfr303I CCGCGG 1 cut(s) 410
SfuI TTCGAA 1 cut(s) 320
SgrBI CCGCGG 1 cut(s) 410
SinI GGWCC 4 cut(s) 119, 374, 404, 478
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 6 cut(s) 18, 219, 226, 437, 515, 526
SsiI CCGC 3 cut(s) 250, 407, 409
SspI AATATT 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 367
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 3 cut(s) 193, 448, 489
TaqI TCGA 1 cut(s) 320
TasI AATT 6 cut(s) 18, 219, 226, 437, 515, 526
Tru1I TTAA 2 cut(s) 222, 266
Tru9I TTAA 2 cut(s) 222, 266
TscAI CASTG 2 cut(s) 288, 453
TspDTI ATGAA 5 cut(s) 84, 330, 474, 486, 509
TspRI CASTG 2 cut(s) 288, 453
VneI GTGCAC 1 cut(s) 36
VpaK11BI GGWCC 4 cut(s) 119, 374, 404, 478
XapI RAATTY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.